RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 RNF38Q9H0F5 515 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 TMEM184CQ9NVA4 438 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 ABCD2Q9UBJ2 740 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 CNTN6Q9UQ52 1028 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 CTSHP09668 335 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 CXCR3P49682 368 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 RABL3Q5HYI8 236 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 ZNF433Q8N7K0 673 aaPredicted RBP13.13□□□□□ -0.31
COL6A3-209ENST00000472056 OSTF1Q92882 214 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 DUSP16Q9BY84 665 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 EBF3Q9H4W6 596 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 RGS17Q9UGC6 210 aaPredicted RBP13.13□□□□□ -0.31
COL6A3-209ENST00000472056 B8ZZF3 427 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 HLA-DPB1P04440 258 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 C2P06681 752 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 CACNG1Q06432 222 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 HMBOX1Q6NT76 420 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 ENDOVQ8N8Q3 282 aaKnown RBP13.13□□□□□ -0.31
COL6A3-209ENST00000472056 ADAMTS15Q8TE58 950 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 SNRNP25Q9BV90 132 aaKnown RBP13.13□□□□□ -0.31
COL6A3-209ENST00000472056 OR3A3P47888 321 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 OR3A2P47893 321 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 AFF1P51825 1210 aaKnown RBP13.13□□□□□ -0.31
COL6A3-209ENST00000472056 FMO1Q01740 532 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 ZACNQ401N2 412 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 IRGQQ8WZA9 623 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 KCNN1Q92952 543 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 CELF6Q96J87 481 aaKnown RBP13.13□□□□□ -0.31
COL6A3-209ENST00000472056 TM9SF2Q99805 663 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 POLR2J2Q9GZM3 115 aaKnown RBP13.13□□□□□ -0.31
COL6A3-209ENST00000472056 L7N2F9 121 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 HNRNPLP14866 589 aaKnown RBP eCLIP13.13□□□□□ -0.31
COL6A3-209ENST00000472056 VAMP2P63027 116 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 DAG1Q14118 895 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 SMU1Q2TAY7 513 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 SPIN4Q56A73 249 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 RPL13AP3Q6NVV1 102 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 MFSD2AQ8NA29 543 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 MIPEPQ99797 713 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 RUVBL1Q9Y265 456 aaKnown RBP13.13□□□□□ -0.31
COL6A3-209ENST00000472056 UBA1P22314 1058 aaKnown RBP13.13□□□□□ -0.31
COL6A3-209ENST00000472056 GATAD2BQ8WXI9 593 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 ZDHHC4Q9NPG8 344 aa13.13□□□□□ -0.31
COL6A3-209ENST00000472056 FARSAQ9Y285 508 aaKnown RBP13.13□□□□□ -0.31
COL6A3-209ENST00000472056 SH3PXD2BA1X283 911 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 ZMPSTE24O75844 475 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 CTPS1P17812 591 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 UTS2BQ765I0 119 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 MARCH10Q8NA82 808 aaPredicted RBP13.12□□□□□ -0.31
COL6A3-209ENST00000472056 TCF25Q9BQ70 676 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 TMEM165Q9HC07 324 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 PCDHGA11Q9Y5H2 935 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 H3BUI4 141 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 C22orf31O95567 290 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 HSPA12BQ96MM6 686 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 SLC39A3Q9BRY0 314 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 CCDC32Q9BV29 185 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 C1orf109Q9NX04 203 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 HEBP2Q9Y5Z4 205 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 MRPS14O60783 128 aaKnown RBP13.12□□□□□ -0.31
COL6A3-209ENST00000472056 GABARAPL2P60520 117 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 E2F1Q01094 437 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 PTGR1Q14914 329 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 GRIK4Q16099 956 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 ZC3HC1Q86WB0 502 aaKnown RBP13.12□□□□□ -0.31
COL6A3-209ENST00000472056 ASCC1Q8N9N2 400 aaKnown RBP13.12□□□□□ -0.31
COL6A3-209ENST00000472056 RAD51AP1Q96B01 352 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 SGK2Q9HBY8 427 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 C14orf166Q9Y224 244 aaKnown RBP13.12□□□□□ -0.31
COL6A3-209ENST00000472056 CCNFP41002 786 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 HERVK_113P63132 956 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 LINGO2Q7L985 606 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 BANPQ8N9N5 519 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 LPGAT1Q92604 370 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 ERVK-6Q9BXR3 956 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 TRPV4Q9HBA0 871 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 NUFIP1Q9UHK0 495 aaKnown RBP13.12□□□□□ -0.31
COL6A3-209ENST00000472056 LACTBL1A8MY62 500 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 SLC33A1O00400 549 aaPredicted RBP13.12□□□□□ -0.31
COL6A3-209ENST00000472056 GADD45AP24522 165 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 NOMO1Q15155 1222 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 FAM183BPQ6ZVS7 135 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 NIPA2Q8N8Q9 360 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 COL26A1Q96A83 441 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 BTN2A3PQ96KV6 586 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 CPXM1Q96SM3 734 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 CADM1Q9BY67 442 aaKnown RBP13.12□□□□□ -0.31
COL6A3-209ENST00000472056 ANKRD36CQ5JPF3 1778 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 IL3P08700 152 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 CCR10P46092 362 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 CAV3P56539 151 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 QPCTQ16769 361 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 CXorf40AQ8TE69 158 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 EDEM1Q92611 657 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 NELFAQ9H3P2 528 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 GPATCH2LQ9NWQ4 482 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 A0A1B0GVM2 712 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 TCAF2A6NFQ2 919 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 CXCR6O00574 342 aa13.12□□□□□ -0.31
COL6A3-209ENST00000472056 PPM1BO75688 479 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms