RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 MAPK10P53779 464 aa16■□□□□ 0.15
SF3A1-204ENST00000447376 MRPS25P82663 173 aaKnown RBP16■□□□□ 0.15
SF3A1-204ENST00000447376 THOC5Q13769 683 aaKnown RBP16■□□□□ 0.15
SF3A1-204ENST00000447376 BBS9Q3SYG4 887 aa16■□□□□ 0.15
SF3A1-204ENST00000447376 GLE1Q53GS7 698 aaKnown RBP16■□□□□ 0.15
SF3A1-204ENST00000447376 DUPD1Q68J44 220 aa16■□□□□ 0.15
SF3A1-204ENST00000447376 TMPRSS9Q7Z410 1059 aa16■□□□□ 0.15
SF3A1-204ENST00000447376 RCBTB1Q8NDN9 531 aa16■□□□□ 0.15
SF3A1-204ENST00000447376 SNIP1Q8TAD8 396 aaKnown RBP16■□□□□ 0.15
SF3A1-204ENST00000447376 ZNF669Q96BR6 464 aaPredicted RBP16■□□□□ 0.15
SF3A1-204ENST00000447376 LRRC39Q96DD0 335 aa16■□□□□ 0.15
SF3A1-204ENST00000447376 MFSD3Q96ES6 412 aa16■□□□□ 0.15
SF3A1-204ENST00000447376 SIGLEC10Q96LC7 697 aa16■□□□□ 0.15
SF3A1-204ENST00000447376 FERD3LQ96RJ6 166 aa16■□□□□ 0.15
SF3A1-204ENST00000447376 INSM2Q96T92 566 aaPredicted RBP16■□□□□ 0.15
SF3A1-204ENST00000447376 TCF12Q99081 682 aa16■□□□□ 0.15
SF3A1-204ENST00000447376 KLHL3Q9UH77 587 aa16■□□□□ 0.15
SF3A1-204ENST00000447376 CFAP20Q9Y6A4 193 aaKnown RBP16■□□□□ 0.15
SF3A1-204ENST00000447376 RPS6KL1Q9Y6S9 549 aa16■□□□□ 0.15
SF3A1-204ENST00000447376 A8MU76 341 aa15.99■□□□□ 0.15
SF3A1-204ENST00000447376 ESPNB1AK53 854 aa15.99■□□□□ 0.15
SF3A1-204ENST00000447376 KPNA5O15131 536 aa15.99■□□□□ 0.15
SF3A1-204ENST00000447376 OR1I1O60431 355 aa15.99■□□□□ 0.15
SF3A1-204ENST00000447376 RASSF9O75901 435 aa15.99■□□□□ 0.15
SF3A1-204ENST00000447376 USP1O94782 785 aa15.99■□□□□ 0.15
SF3A1-204ENST00000447376 APOA4P06727 396 aa15.99■□□□□ 0.15
SF3A1-204ENST00000447376 HOXB3P14651 431 aaPredicted RBP15.99■□□□□ 0.15
SF3A1-204ENST00000447376 PGAM1P18669 254 aa15.99■□□□□ 0.15
SF3A1-204ENST00000447376 MPSTP25325 297 aa15.99■□□□□ 0.15
SF3A1-204ENST00000447376 PRKAA1Q13131 559 aa15.99■□□□□ 0.15
SF3A1-204ENST00000447376 C16orf72Q14CZ0 275 aa15.99■□□□□ 0.15
SF3A1-204ENST00000447376 ANKRD20A4Q4UJ75 823 aa15.99■□□□□ 0.15
SF3A1-204ENST00000447376 BROXQ5VW32 411 aa15.99■□□□□ 0.15
SF3A1-204ENST00000447376 IRGCQ6NXR0 463 aa15.99■□□□□ 0.15
SF3A1-204ENST00000447376 CYB5D1Q6P9G0 228 aa15.99■□□□□ 0.15
SF3A1-204ENST00000447376 CES3Q6UWW8 571 aa15.99■□□□□ 0.15
SF3A1-204ENST00000447376 ZNF574Q6ZN55 896 aaPredicted RBP15.99■□□□□ 0.15
SF3A1-204ENST00000447376 TMEM135Q86UB9 458 aa15.99■□□□□ 0.15
SF3A1-204ENST00000447376 OOSP2Q86WS3 158 aa15.99■□□□□ 0.15
SF3A1-204ENST00000447376 FAM129CQ86XR2 697 aa15.99■□□□□ 0.15
SF3A1-204ENST00000447376 LMNTD2Q8IXW0 634 aa15.99■□□□□ 0.15
SF3A1-204ENST00000447376 CALML6Q8TD86 181 aa15.99■□□□□ 0.15
SF3A1-204ENST00000447376 ASZ1Q8WWH4 475 aa15.99■□□□□ 0.15
SF3A1-204ENST00000447376 RMDN2Q96LZ7 410 aa15.99■□□□□ 0.15
SF3A1-204ENST00000447376 TGM7Q96PF1 710 aa15.99■□□□□ 0.15
SF3A1-204ENST00000447376 LRRC1Q9BTT6 524 aa15.99■□□□□ 0.15
SF3A1-204ENST00000447376 KIR3DX1Q9H7L2 352 aa15.99■□□□□ 0.15
SF3A1-204ENST00000447376 MVB12BQ9H7P6 319 aa15.99■□□□□ 0.15
SF3A1-204ENST00000447376 ASCL3Q9NQ33 180 aa15.99■□□□□ 0.15
SF3A1-204ENST00000447376 FRYQ5TBA9 3013 aa15.99■□□□□ 0.15
SF3A1-204ENST00000447376 COL27A1Q8IZC6 1860 aaPredicted RBP15.99■□□□□ 0.15
SF3A1-204ENST00000447376 IGF2RP11717 2491 aa15.99■□□□□ 0.15
SF3A1-204ENST00000447376 MAP1BP46821 2468 aaKnown RBP15.99■□□□□ 0.15
SF3A1-204ENST00000447376 MN1Q10571 1320 aaPredicted RBP15.98■□□□□ 0.15
SF3A1-204ENST00000447376 H3BMM5 538 aa15.98■□□□□ 0.15
SF3A1-204ENST00000447376 TOX3O15405 576 aaPredicted RBP15.98■□□□□ 0.15
SF3A1-204ENST00000447376 CAPN5O15484 640 aaPredicted RBP15.98■□□□□ 0.15
SF3A1-204ENST00000447376 HGFP14210 728 aa15.98■□□□□ 0.15
SF3A1-204ENST00000447376 OGNP20774 298 aaKnown RBP15.98■□□□□ 0.15
SF3A1-204ENST00000447376 ABCG1P45844 678 aa15.98■□□□□ 0.15
SF3A1-204ENST00000447376 DHX9Q08211 1270 aaKnown RBP15.98■□□□□ 0.15
SF3A1-204ENST00000447376 BRD3Q15059 726 aa15.98■□□□□ 0.15
SF3A1-204ENST00000447376 CAPRIN2Q6IMN6 1127 aaKnown RBP15.98■□□□□ 0.15
SF3A1-204ENST00000447376 CENPUQ71F23 418 aa15.98■□□□□ 0.15
SF3A1-204ENST00000447376 PDZD3Q86UT5 571 aa15.98■□□□□ 0.15
SF3A1-204ENST00000447376 ACVR1CQ8NER5 493 aa15.98■□□□□ 0.15
SF3A1-204ENST00000447376 GPR150Q8NGU9 434 aa15.98■□□□□ 0.15
SF3A1-204ENST00000447376 KCNE4Q8WWG9 221 aa15.98■□□□□ 0.15
SF3A1-204ENST00000447376 EBNA1BP2Q99848 306 aaKnown RBP15.98■□□□□ 0.15
SF3A1-204ENST00000447376 CARD6Q9BX69 1037 aa15.98■□□□□ 0.15
SF3A1-204ENST00000447376 CCDC68Q9H2F9 335 aa15.98■□□□□ 0.15
SF3A1-204ENST00000447376 WDR70Q9NW82 654 aa15.98■□□□□ 0.15
SF3A1-204ENST00000447376 TMEM9Q9P0T7 183 aa15.98■□□□□ 0.15
SF3A1-204ENST00000447376 PCDHGA7Q9Y5G6 932 aa15.98■□□□□ 0.15
SF3A1-204ENST00000447376 PRSS21Q9Y6M0 314 aa15.98■□□□□ 0.15
SF3A1-204ENST00000447376 EFCAB7A8K855 629 aa15.97■□□□□ 0.15
SF3A1-204ENST00000447376 TAF4O00268 1085 aa15.97■□□□□ 0.15
SF3A1-204ENST00000447376 NVLO15381 856 aaKnown RBP15.97■□□□□ 0.15
SF3A1-204ENST00000447376 RPN2P04844 631 aa15.97■□□□□ 0.15
SF3A1-204ENST00000447376 ITIH1P19827 911 aa15.97■□□□□ 0.15
SF3A1-204ENST00000447376 RPS3P23396 243 aaKnown RBP eCLIP15.97■□□□□ 0.152e-9■■□□□ 14.3
SF3A1-204ENST00000447376 SLC5A2P31639 672 aa15.97■□□□□ 0.15
SF3A1-204ENST00000447376 EIF2S3P41091 472 aaKnown RBP15.97■□□□□ 0.15
SF3A1-204ENST00000447376 PREPP48147 710 aa15.97■□□□□ 0.15
SF3A1-204ENST00000447376 ARL4DP49703 201 aa15.97■□□□□ 0.15
SF3A1-204ENST00000447376 EIF3BP55884 814 aaKnown RBP15.97■□□□□ 0.15
SF3A1-204ENST00000447376 RAB15P59190 212 aa15.97■□□□□ 0.15
SF3A1-204ENST00000447376 SLC7A5Q01650 507 aa15.97■□□□□ 0.15
SF3A1-204ENST00000447376 CFHR1Q03591 330 aa15.97■□□□□ 0.15
SF3A1-204ENST00000447376 SEMA3AQ14563 771 aa15.97■□□□□ 0.15
SF3A1-204ENST00000447376 LONRF1Q17RB8 773 aa15.97■□□□□ 0.15
SF3A1-204ENST00000447376 SPANXN3Q5MJ09 141 aa15.97■□□□□ 0.15
SF3A1-204ENST00000447376 NEPROQ6NW34 567 aa15.97■□□□□ 0.15
SF3A1-204ENST00000447376 CLEC14AQ86T13 490 aa15.97■□□□□ 0.15
SF3A1-204ENST00000447376 LDB1Q86U70 411 aaPredicted RBP15.97■□□□□ 0.15
SF3A1-204ENST00000447376 LILRA3Q8N6C8 439 aaPredicted RBP15.97■□□□□ 0.15
SF3A1-204ENST00000447376 SERBP1Q8NC51 408 aaKnown RBP eCLIP15.97■□□□□ 0.15
SF3A1-204ENST00000447376 SPDYE1Q8NFV5 336 aaPredicted RBP15.97■□□□□ 0.15
SF3A1-204ENST00000447376 LCN9Q8WX39 176 aa15.97■□□□□ 0.15
SF3A1-204ENST00000447376 TFGQ92734 400 aaPredicted RBP15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms