RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 L3HYPDHQ96EM0 354 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 LINGO1Q96FE5 620 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 ZNF641Q96N77 438 aaPredicted RBP9.11□□□□□ -0.95
ATG4A-202ENST00000345734 NECAB3Q96P71 396 aaPredicted RBP9.11□□□□□ -0.95
ATG4A-202ENST00000345734 MCCC1Q96RQ3 725 aaPredicted RBP9.11□□□□□ -0.95
ATG4A-202ENST00000345734 SLC2A11Q9BYW1 496 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 ABCG8Q9H221 673 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 PIF1Q9H611 641 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 CD248Q9HCU0 757 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 UTP6Q9NYH9 597 aaKnown RBP9.11□□□□□ -0.95
ATG4A-202ENST00000345734 B4GALT6Q9UBX8 382 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 CRLS1Q9UJA2 301 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 RNF112Q9ULX5 631 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 G3BP2Q9UN86 482 aaKnown RBP9.11□□□□□ -0.95
ATG4A-202ENST00000345734 TRBV5-4A0A0C4DH59 114 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 NCF1BA6NI72 391 aaPredicted RBP9.11□□□□□ -0.95
ATG4A-202ENST00000345734 NCF1CA8MVU1 366 aaPredicted RBP9.11□□□□□ -0.95
ATG4A-202ENST00000345734 MEI4A8MW99 385 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 WASH3PC4AMC7 463 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 BTN3A1O00481 513 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 PPP6CO00743 305 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 GYG2O15488 501 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 GSC2O15499 205 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 DCXO43602 365 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 TULP3O75386 442 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 SKAP2O75563 359 aaPredicted RBP9.11□□□□□ -0.95
ATG4A-202ENST00000345734 ATP6V1G2O95670 118 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 CTSLP07711 333 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 C1SP09871 688 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 GFAPP14136 432 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 NCF1P14598 390 aaPredicted RBP9.11□□□□□ -0.95
ATG4A-202ENST00000345734 CD9P21926 228 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 RECQLP46063 649 aaPredicted RBP9.11□□□□□ -0.95
ATG4A-202ENST00000345734 HK2P52789 917 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 ATP6V0D1P61421 351 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 HERVK_113P63132 956 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 POM121L1PQ3SYA9 428 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 SNAP47Q5SQN1 464 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 TMEM198Q66K66 360 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 PTRHD1Q6GMV3 140 aaKnown RBP9.11□□□□□ -0.95
ATG4A-202ENST00000345734 GRAMD4Q6IC98 578 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 CERS6Q6ZMG9 384 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 ARHGAP22Q7Z5H3 698 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 CBARPQ8N350 705 aaPredicted RBP9.11□□□□□ -0.95
ATG4A-202ENST00000345734 NKAPQ8N5F7 415 aaKnown RBP9.11□□□□□ -0.95
ATG4A-202ENST00000345734 STAG3L4Q8TBR4 150 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 FUBP1Q96AE4 644 aaKnown RBP9.11□□□□□ -0.95
ATG4A-202ENST00000345734 HEPHQ9BQS7 1158 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 ERVK-6Q9BXR3 956 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 CLPBQ9H078 707 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 SFXN1Q9H9B4 322 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 APPL1Q9UKG1 709 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 SORCS3Q9UPU3 1222 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 CDYLQ9Y232 598 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 COMMD10Q9Y6G5 202 aa9.11□□□□□ -0.95
ATG4A-202ENST00000345734 HEPACAM2A8MVW5 462 aa9.1□□□□□ -0.95
ATG4A-202ENST00000345734 SPECC1L-ADORA2AF8WAN1 911 aa9.1□□□□□ -0.95
ATG4A-202ENST00000345734 SLCO1B7G3V0H7 640 aa9.1□□□□□ -0.95
ATG4A-202ENST00000345734 HOXC11O43248 304 aaPredicted RBP9.1□□□□□ -0.95
ATG4A-202ENST00000345734 ZNF7P17097 686 aaPredicted RBP9.1□□□□□ -0.95
ATG4A-202ENST00000345734 HK3P52790 923 aa9.1□□□□□ -0.95
ATG4A-202ENST00000345734 IL2P60568 153 aa9.1□□□□□ -0.95
ATG4A-202ENST00000345734 BTKQ06187 659 aa9.1□□□□□ -0.95
ATG4A-202ENST00000345734 CAMK2GQ13555 558 aaPredicted RBP9.1□□□□□ -0.95
ATG4A-202ENST00000345734 PWP1Q13610 501 aa9.1□□□□□ -0.95
ATG4A-202ENST00000345734 TBCCQ15814 346 aa9.1□□□□□ -0.95
ATG4A-202ENST00000345734 GAB4Q2WGN9 574 aa9.1□□□□□ -0.95
ATG4A-202ENST00000345734 ATP13A5Q4VNC0 1218 aa9.1□□□□□ -0.95
ATG4A-202ENST00000345734 NXNQ6DKJ4 435 aa9.1□□□□□ -0.95
ATG4A-202ENST00000345734 CLEC6AQ6EIG7 209 aa9.1□□□□□ -0.95
ATG4A-202ENST00000345734 CAPRIN2Q6IMN6 1127 aaKnown RBP9.1□□□□□ -0.95
ATG4A-202ENST00000345734 BNC2Q6ZN30 1099 aaPredicted RBP9.1□□□□□ -0.95
ATG4A-202ENST00000345734 SFTPA1Q8IWL2 248 aa9.1□□□□□ -0.95
ATG4A-202ENST00000345734 RBFAQ8N0V3 343 aa9.1□□□□□ -0.95
ATG4A-202ENST00000345734 RBM15BQ8NDT2 890 aaKnown RBP9.1□□□□□ -0.95
ATG4A-202ENST00000345734 FAM13CQ8NE31 585 aa9.1□□□□□ -0.95
ATG4A-202ENST00000345734 BPIFB1Q8TDL5 484 aa9.1□□□□□ -0.95
ATG4A-202ENST00000345734 SMARCD2Q92925 531 aa9.1□□□□□ -0.95
ATG4A-202ENST00000345734 MARK4Q96L34 752 aa9.1□□□□□ -0.95
ATG4A-202ENST00000345734 EML4Q9HC35 981 aaKnown RBP9.1□□□□□ -0.95
ATG4A-202ENST00000345734 BAIAP2L1Q9UHR4 511 aa9.1□□□□□ -0.95
ATG4A-202ENST00000345734 CD84Q9UIB8 345 aa9.1□□□□□ -0.95
ATG4A-202ENST00000345734 DHRS7Q9Y394 339 aa9.1□□□□□ -0.95
ATG4A-202ENST00000345734 PCDHB1Q9Y5F3 818 aa9.1□□□□□ -0.95
ATG4A-202ENST00000345734 LRRK1Q38SD2 2015 aa9.1□□□□□ -0.95
ATG4A-202ENST00000345734 PRRT4C9JH25 899 aa9.1□□□□□ -0.95
ATG4A-202ENST00000345734 SDHDO14521 159 aa9.1□□□□□ -0.95
ATG4A-202ENST00000345734 LINC01565O15544 149 aa9.1□□□□□ -0.95
ATG4A-202ENST00000345734 TRIM16O95361 564 aa9.1□□□□□ -0.95
ATG4A-202ENST00000345734 PAPLNO95428 1278 aa9.1□□□□□ -0.95
ATG4A-202ENST00000345734 RPS3P23396 243 aaKnown RBP eCLIP9.1□□□□□ -0.95
ATG4A-202ENST00000345734 EEF1DP29692 281 aaKnown RBP9.1□□□□□ -0.95
ATG4A-202ENST00000345734 NNMTP40261 264 aa9.1□□□□□ -0.95
ATG4A-202ENST00000345734 AGTR2P50052 363 aa9.1□□□□□ -0.95
ATG4A-202ENST00000345734 KLF10Q13118 480 aa9.1□□□□□ -0.95
ATG4A-202ENST00000345734 PERM1Q5SV97 790 aa9.1□□□□□ -0.95
ATG4A-202ENST00000345734 ZNF468Q5VIY5 522 aaPredicted RBP9.1□□□□□ -0.95
ATG4A-202ENST00000345734 ACAD11Q709F0 780 aa9.1□□□□□ -0.95
ATG4A-202ENST00000345734 NXPE1Q8N323 547 aa9.1□□□□□ -0.95
ATG4A-202ENST00000345734 FBXO39Q8N4B4 442 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms