RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 ARL6IP4Q66PJ3 421 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 FOXR1Q6PIV2 292 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 SLC22A25Q6T423 547 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 TMPRSS11AQ6ZMR5 421 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 GAREM2Q75VX8 874 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 PARGQ86W56 976 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 C19orf47Q8N9M1 422 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 GRIN3AQ8TCU5 1115 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 EPS8L3Q8TE67 593 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 AZIN2Q96A70 460 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 FUZQ9BT04 418 aa7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 TECRQ9NZ01 308 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 DMGDHQ9UI17 866 aaKnown RBP7.56□□□□□ -1.2
LIMCH1-201ENST00000313860 OR2J3O76001 311 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 GPIP06744 558 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 NUDT17P0C025 328 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 COL6A2P12110 1019 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 PORP16435 677 aaPredicted RBP7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 ITGB6P18564 788 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 EPORP19235 508 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 GRIK1P39086 918 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 RFC3P40938 356 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 CLK3P49761 638 aaKnown RBP7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 ACTR3P61158 418 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 ARL6IP1Q15041 203 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 ZNF704Q6ZNC4 412 aaPredicted RBP7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 CHST15Q7LFX5 561 aaPredicted RBP7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 FAM35AQ86V20 835 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 MRAPQ8TCY5 172 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 CAVIN3Q969G5 261 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 TMEM159Q96B96 161 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 SGK3Q96BR1 496 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 STUB1Q9UNE7 303 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 HMGXB3Q12766 1538 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 COL17A1Q9UMD9 1497 aaPredicted RBP7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 USP27XA6NNY8 438 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 TULP3O75386 442 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 ITGA4P13612 1032 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 SYN1P17600 705 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 NTF3P20783 257 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 VEGFCP49767 419 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 FXR1P51114 621 aaKnown RBP eCLIP7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 APLP1P51693 650 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 FKBP3Q00688 224 aaKnown RBP7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 TRIM28Q13263 835 aaKnown RBP7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 WDR45BQ5MNZ6 344 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 IDO2Q6ZQW0 420 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 C3orf62Q6ZUJ4 267 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 PGAP1Q75T13 922 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 ANKS1BQ7Z6G8 1248 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 ADHFE1Q8IWW8 467 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 FUKQ8N0W3 1084 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 RP9Q8TA86 221 aaKnown RBP7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 DCTPP1Q9H773 170 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 ASB6Q9NWX5 421 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 PCDHGB5Q9Y5G0 923 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 DAPK1P53355 1430 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 C5orf52A6NGY3 159 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 HTR3BO95264 441 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 ADH1BP00325 375 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 F10P00742 488 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 RPLP1P05386 114 aaKnown RBP7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 ACO1P21399 889 aaKnown RBP7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 NDUFA8P51970 172 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 NFKB2Q00653 900 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 HTR4Q13639 388 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 DPYSL2Q16555 572 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 HYAL4Q2M3T9 481 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 ASPRV1Q53RT3 343 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 GALNT17Q6IS24 598 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 TICAM1Q8IUC6 712 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 CORO2AQ92828 525 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 APBB2Q92870 758 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 OR4C12Q96R67 309 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 LIN7BQ9HAP6 207 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 ZNF532Q9HCE3 1301 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 TRAV6A0A075B6T7 132 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 TSPAN6O43657 245 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 DUSP11O75319 330 aaKnown RBP7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 KCNK5O95279 499 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 PAPSS2O95340 614 aaPredicted RBP7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 OR5H8P0DN80 308 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 NR2F6P10588 404 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 BRCC3P46736 316 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 PSMB2P49721 201 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 GNG2P59768 71 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 GNMTQ14749 295 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 MLC1Q15049 377 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 DCAF6Q58WW2 860 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 TTC6Q86TZ1 520 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 ARL14Q8N4G2 192 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 KYQ8NBH2 561 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 ZNF563Q8TA94 476 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 AHCYL2Q96HN2 611 aaKnown RBP7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 TCF12Q99081 682 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 MFFQ9GZY8 342 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 SLC22A4Q9H015 551 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 CPVLQ9H3G5 476 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 CHST12Q9NRB3 414 aa7.55□□□□□ -1.2
LIMCH1-201ENST00000313860 KCNK4Q9NYG8 393 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms