RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 PCDHGA11Q9Y5H2 935 aa19■□□□□ 0.63
VPS28-213ENST00000530983 H0YAE9 185 aa18.99■□□□□ 0.63
VPS28-213ENST00000530983 ANKRD28O15084 1053 aa18.99■□□□□ 0.63
VPS28-213ENST00000530983 LSM1O15116 133 aaKnown RBP18.99■□□□□ 0.63
VPS28-213ENST00000530983 PRSS23O95084 383 aa18.99■□□□□ 0.63
VPS28-213ENST00000530983 HLCSP50747 726 aa18.99■□□□□ 0.63
VPS28-213ENST00000530983 CLCN7P51798 805 aa18.99■□□□□ 0.63
VPS28-213ENST00000530983 MTA1Q13330 715 aa18.99■□□□□ 0.63
VPS28-213ENST00000530983 CCNYL2Q5T2Q4 361 aa18.99■□□□□ 0.63
VPS28-213ENST00000530983 IL27RAQ6UWB1 636 aa18.99■□□□□ 0.63
VPS28-213ENST00000530983 TMEM26Q6ZUK4 368 aa18.99■□□□□ 0.63
VPS28-213ENST00000530983 METTL6Q8TCB7 284 aa18.99■□□□□ 0.63
VPS28-213ENST00000530983 YTHDF1Q9BYJ9 559 aaKnown RBP18.99■□□□□ 0.63
VPS28-213ENST00000530983 NAA50Q9GZZ1 169 aaKnown RBP18.99■□□□□ 0.63
VPS28-213ENST00000530983 IFT80Q9P2H3 777 aaPredicted RBP18.99■□□□□ 0.63
VPS28-213ENST00000530983 GABRQQ9UN88 632 aa18.99■□□□□ 0.63
VPS28-213ENST00000530983 E5RI56 91 aa18.99■□□□□ 0.63
VPS28-213ENST00000530983 ARNTLO00327 626 aa18.99■□□□□ 0.63
VPS28-213ENST00000530983 RSL1D1O76021 490 aaKnown RBP18.99■□□□□ 0.63
VPS28-213ENST00000530983 TCF3P15923 654 aa18.99■□□□□ 0.63
VPS28-213ENST00000530983 ARL1P40616 181 aaPredicted RBP18.99■□□□□ 0.63
VPS28-213ENST00000530983 SGSHP51688 502 aa18.99■□□□□ 0.63
VPS28-213ENST00000530983 DGKQP52824 942 aa18.99■□□□□ 0.63
VPS28-213ENST00000530983 ARSFP54793 590 aa18.99■□□□□ 0.63
VPS28-213ENST00000530983 FAM189BP81408 668 aa18.99■□□□□ 0.63
VPS28-213ENST00000530983 DUSP4Q13115 394 aa18.99■□□□□ 0.63
VPS28-213ENST00000530983 GPR17Q13304 367 aa18.99■□□□□ 0.63
VPS28-213ENST00000530983 PLA2G4EQ3MJ16 856 aa18.99■□□□□ 0.63
VPS28-213ENST00000530983 CYP20A1Q6UW02 462 aa18.99■□□□□ 0.63
VPS28-213ENST00000530983 PRR23BQ6ZRT6 265 aa18.99■□□□□ 0.63
VPS28-213ENST00000530983 LEMD2Q8NC56 503 aa18.99■□□□□ 0.63
VPS28-213ENST00000530983 GIPC3Q8TF64 312 aa18.99■□□□□ 0.63
VPS28-213ENST00000530983 MUS81Q96NY9 551 aa18.99■□□□□ 0.63
VPS28-213ENST00000530983 CGREF1Q99674 301 aa18.99■□□□□ 0.63
VPS28-213ENST00000530983 ARHGAP39Q9C0H5 1083 aa18.99■□□□□ 0.63
VPS28-213ENST00000530983 NUDT4Q9NZJ9 180 aa18.99■□□□□ 0.63
VPS28-213ENST00000530983 PLXNA4Q9HCM2 1894 aa18.98■□□□□ 0.63
VPS28-213ENST00000530983 TRIM64BA6NI03 449 aa18.98■□□□□ 0.63
VPS28-213ENST00000530983 CBX4O00257 560 aa18.98■□□□□ 0.63
VPS28-213ENST00000530983 OR7A17O14581 309 aa18.98■□□□□ 0.63
VPS28-213ENST00000530983 PFDN6O15212 129 aa18.98■□□□□ 0.63
VPS28-213ENST00000530983 FOXD2O60548 495 aaPredicted RBP18.98■□□□□ 0.63
VPS28-213ENST00000530983 TULP3O75386 442 aa18.98■□□□□ 0.63
VPS28-213ENST00000530983 ALBP02768 609 aa18.98■□□□□ 0.63
VPS28-213ENST00000530983 TFPTP0C1Z6 253 aa18.98■□□□□ 0.63
VPS28-213ENST00000530983 POLR2IP36954 125 aaKnown RBP18.98■□□□□ 0.63
VPS28-213ENST00000530983 NEDD8Q15843 81 aa18.98■□□□□ 0.63
VPS28-213ENST00000530983 ZIK1Q3SY52 487 aaPredicted RBP18.98■□□□□ 0.63
VPS28-213ENST00000530983 AARS2Q5JTZ9 985 aaKnown RBP18.98■□□□□ 0.63
VPS28-213ENST00000530983 GOLGA7Q7Z5G4 137 aa18.98■□□□□ 0.63
VPS28-213ENST00000530983 ITIH5Q86UX2 942 aa18.98■□□□□ 0.63
VPS28-213ENST00000530983 RNF168Q8IYW5 571 aaPredicted RBP18.98■□□□□ 0.63
VPS28-213ENST00000530983 TTC30BQ8N4P2 665 aa18.98■□□□□ 0.63
VPS28-213ENST00000530983 PDPRQ8NCN5 879 aa18.98■□□□□ 0.63
VPS28-213ENST00000530983 A0A1W2PPW3 197 aa18.97■□□□□ 0.63
VPS28-213ENST00000530983 STX7O15400 261 aaKnown RBP18.97■□□□□ 0.63
VPS28-213ENST00000530983 B4GAT1O43505 415 aa18.97■□□□□ 0.63
VPS28-213ENST00000530983 ESR1P03372 595 aa18.97■□□□□ 0.63
VPS28-213ENST00000530983 CKBP12277 381 aa18.97■□□□□ 0.63
VPS28-213ENST00000530983 ELK4P28324 431 aa18.97■□□□□ 0.63
VPS28-213ENST00000530983 ALDH3A2P51648 485 aa18.97■□□□□ 0.63
VPS28-213ENST00000530983 TRAF2Q12933 501 aa18.97■□□□□ 0.63
VPS28-213ENST00000530983 CRHR2Q13324 411 aa18.97■□□□□ 0.63
VPS28-213ENST00000530983 FGD3Q5JSP0 725 aa18.97■□□□□ 0.63
VPS28-213ENST00000530983 FAM126BQ8IXS8 530 aa18.97■□□□□ 0.63
VPS28-213ENST00000530983 OR4F6Q8NGB9 312 aa18.97■□□□□ 0.63
VPS28-213ENST00000530983 TMBIM1Q969X1 311 aa18.97■□□□□ 0.63
VPS28-213ENST00000530983 P2RY12Q9H244 342 aa18.97■□□□□ 0.63
VPS28-213ENST00000530983 TSR3Q9UJK0 312 aaKnown RBP18.97■□□□□ 0.63
VPS28-213ENST00000530983 POLR3HQ9Y535 204 aaPredicted RBP18.97■□□□□ 0.63
VPS28-213ENST00000530983 MAGED1Q9Y5V3 778 aaPredicted RBP18.97■□□□□ 0.63
VPS28-213ENST00000530983 H7C0S8 307 aa18.97■□□□□ 0.63
VPS28-213ENST00000530983 CPNE6O95741 557 aa18.97■□□□□ 0.63
VPS28-213ENST00000530983 ALPLP05186 524 aa18.97■□□□□ 0.63
VPS28-213ENST00000530983 CNPP09543 421 aaKnown RBP18.97■□□□□ 0.63
VPS28-213ENST00000530983 RAP2AP10114 183 aa18.97■□□□□ 0.63
VPS28-213ENST00000530983 ATF6P18850 670 aa18.97■□□□□ 0.63
VPS28-213ENST00000530983 GGT1P19440 569 aa18.97■□□□□ 0.63
VPS28-213ENST00000530983 PTGER3P43115 390 aa18.97■□□□□ 0.63
VPS28-213ENST00000530983 ABRAXAS2Q15018 415 aa18.97■□□□□ 0.63
VPS28-213ENST00000530983 PCBP2Q15366 365 aaKnown RBP eCLIP18.97■□□□□ 0.63
VPS28-213ENST00000530983 NR6A1Q15406 480 aa18.97■□□□□ 0.63
VPS28-213ENST00000530983 RFTN2Q52LD8 501 aaPredicted RBP18.97■□□□□ 0.63
VPS28-213ENST00000530983 TRAF7Q6Q0C0 670 aa18.97■□□□□ 0.63
VPS28-213ENST00000530983 SBSNQ6UWP8 590 aa18.97■□□□□ 0.63
VPS28-213ENST00000530983 DENND1CQ8IV53 801 aa18.97■□□□□ 0.63
VPS28-213ENST00000530983 ITFG1Q8TB96 612 aa18.97■□□□□ 0.63
VPS28-213ENST00000530983 ADGRE3Q9BY15 652 aa18.97■□□□□ 0.63
VPS28-213ENST00000530983 RRAGCQ9HB90 399 aa18.97■□□□□ 0.63
VPS28-213ENST00000530983 DNMT3LQ9UJW3 386 aa18.97■□□□□ 0.63
VPS28-213ENST00000530983 DEAF1O75398 565 aaPredicted RBP18.96■□□□□ 0.63
VPS28-213ENST00000530983 CLDN11O75508 207 aa18.96■□□□□ 0.63
VPS28-213ENST00000530983 RHOCP08134 193 aa18.96■□□□□ 0.63
VPS28-213ENST00000530983 PCNAP12004 261 aa18.96■□□□□ 0.63
VPS28-213ENST00000530983 CD247P20963 164 aa18.96■□□□□ 0.63
VPS28-213ENST00000530983 SHMT2P34897 504 aa18.96■□□□□ 0.63
VPS28-213ENST00000530983 SLC11A2P49281 568 aa18.96■□□□□ 0.63
VPS28-213ENST00000530983 PLIN5Q00G26 463 aa18.96■□□□□ 0.63
VPS28-213ENST00000530983 PWP1Q13610 501 aa18.96■□□□□ 0.63
VPS28-213ENST00000530983 DAG1Q14118 895 aa18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms