RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 DEFB133Q30KQ1 61 aa13.82□□□□□ -0.2
VIPAS39-208ENST00000556412 CTSL3PQ5NE16 218 aa13.82□□□□□ -0.2
VIPAS39-208ENST00000556412 EMBQ6PCB8 327 aa13.82□□□□□ -0.2
VIPAS39-208ENST00000556412 NAPRTQ6XQN6 538 aa13.82□□□□□ -0.2
VIPAS39-208ENST00000556412 KIAA2013Q8IYS2 634 aa13.82□□□□□ -0.2
VIPAS39-208ENST00000556412 FSTL5Q8N475 847 aaPredicted RBP13.82□□□□□ -0.2
VIPAS39-208ENST00000556412 GPATCH11Q8N954 259 aa13.82□□□□□ -0.2
VIPAS39-208ENST00000556412 AENQ8WTP8 325 aaKnown RBP13.82□□□□□ -0.2
VIPAS39-208ENST00000556412 CYTH2Q99418 400 aa13.82□□□□□ -0.2
VIPAS39-208ENST00000556412 TSSK1BQ9BXA7 367 aa13.82□□□□□ -0.2
VIPAS39-208ENST00000556412 TXLNGYQ9BZA5 131 aa13.82□□□□□ -0.2
VIPAS39-208ENST00000556412 NSMCE4AQ9NXX6 385 aa13.82□□□□□ -0.2
VIPAS39-208ENST00000556412 RABGEF1Q9UJ41 708 aa13.82□□□□□ -0.2
VIPAS39-208ENST00000556412 PCDHB1Q9Y5F3 818 aa13.82□□□□□ -0.2
VIPAS39-208ENST00000556412 LRRK1Q38SD2 2015 aa13.82□□□□□ -0.2
VIPAS39-208ENST00000556412 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 C4orf47A7E2U8 309 aa13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 E5RI56 91 aa13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 CDX4O14627 284 aaPredicted RBP13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 FOXD2O60548 495 aaPredicted RBP13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 NIPSNAP2O75323 286 aa13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 ESR1P03372 595 aa13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 ANXA6P08133 673 aa13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 PKMP14618 531 aaKnown RBP13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 SAT1P21673 171 aa13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 RPS3P23396 243 aaKnown RBP eCLIP13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 GABRB3P28472 473 aa13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 CSE1LP55060 971 aaKnown RBP13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 BOP1Q14137 746 aaKnown RBP13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 NFE2L1Q14494 772 aa13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 SLC29A2Q14542 456 aa13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 MAP9Q49MG5 647 aa13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 SYTL3Q4VX76 610 aa13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 ZNF449Q6P9G9 518 aa13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 CYS1Q717R9 158 aa13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 C11orf96Q7Z7L8 435 aa13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 SLC26A11Q86WA9 606 aa13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 GKN2Q86XP6 184 aa13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 SLC25A45Q8N413 288 aa13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 FAM46DQ8NEK8 389 aa13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 LKAAEAR1Q8TD35 194 aa13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 SAP25Q8TEE9 199 aa13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 SCG3Q8WXD2 468 aaKnown RBP13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 ELMO1Q92556 727 aa13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 BIRC8Q96P09 236 aa13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 TIMM29Q9BSF4 260 aa13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 CCM2Q9BSQ5 444 aa13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 DPEP2Q9H4A9 486 aa13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 ACSS3Q9H6R3 686 aa13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 ST14Q9Y5Y6 855 aa13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 DMDP11532 3685 aa13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 SCN8AQ9UQD0 1980 aa13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 TNRC6BQ9UPQ9 1833 aaKnown RBP13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 FANCMQ8IYD8 2048 aa13.81□□□□□ -0.2
VIPAS39-208ENST00000556412 NEMP2A6NFY4 417 aa13.8□□□□□ -0.2
VIPAS39-208ENST00000556412 PDZK1P1A8MUH7 402 aa13.8□□□□□ -0.2
VIPAS39-208ENST00000556412 POC1B-GALNT4F8VUJ3 575 aa13.8□□□□□ -0.2
VIPAS39-208ENST00000556412 FAM155BO75949 473 aa13.8□□□□□ -0.2
VIPAS39-208ENST00000556412 CFAP206Q8IYR0 622 aa13.8□□□□□ -0.2
VIPAS39-208ENST00000556412 MYRIPQ8NFW9 859 aa13.8□□□□□ -0.2
VIPAS39-208ENST00000556412 GPBAR1Q8TDU6 330 aa13.8□□□□□ -0.2
VIPAS39-208ENST00000556412 DNAAF2Q9NVR5 837 aaKnown RBP13.8□□□□□ -0.2
VIPAS39-208ENST00000556412 SIRPGQ9P1W8 387 aa13.8□□□□□ -0.2
VIPAS39-208ENST00000556412 EXOC1LA0A1B0GW35 172 aa13.8□□□□□ -0.2
VIPAS39-208ENST00000556412 MGAT4DA6NG13 374 aa13.8□□□□□ -0.2
VIPAS39-208ENST00000556412 B4DGG1 531 aa13.8□□□□□ -0.2
VIPAS39-208ENST00000556412 H3BMM5 538 aa13.8□□□□□ -0.2
VIPAS39-208ENST00000556412 YY2O15391 372 aa13.8□□□□□ -0.2
VIPAS39-208ENST00000556412 C1QAP02745 245 aa13.8□□□□□ -0.2
VIPAS39-208ENST00000556412 RPL10P27635 214 aaKnown RBP13.8□□□□□ -0.2
VIPAS39-208ENST00000556412 GP5P40197 560 aa13.8□□□□□ -0.2
VIPAS39-208ENST00000556412 ADARP55265 1226 aaKnown RBP13.8□□□□□ -0.2
VIPAS39-208ENST00000556412 ARHGAP8P85298 464 aa13.8□□□□□ -0.2
VIPAS39-208ENST00000556412 SUZ12Q15022 739 aaKnown RBP13.8□□□□□ -0.2
VIPAS39-208ENST00000556412 KLHL38Q2WGJ6 581 aa13.8□□□□□ -0.2
VIPAS39-208ENST00000556412 RBM20Q5T481 1227 aaKnown RBP13.8□□□□□ -0.2
VIPAS39-208ENST00000556412 ZNF549Q6P9A3 640 aa13.8□□□□□ -0.2
VIPAS39-208ENST00000556412 FAM83HQ6ZRV2 1179 aaPredicted RBP13.8□□□□□ -0.2
VIPAS39-208ENST00000556412 NRROSQ86YC3 692 aa13.8□□□□□ -0.2
VIPAS39-208ENST00000556412 LILRA3Q8N6C8 439 aaPredicted RBP13.8□□□□□ -0.2
VIPAS39-208ENST00000556412 OR2L2Q8NH16 312 aa13.8□□□□□ -0.2
VIPAS39-208ENST00000556412 SETD7Q8WTS6 366 aaKnown RBP13.8□□□□□ -0.2
VIPAS39-208ENST00000556412 CAVIN3Q969G5 261 aa13.8□□□□□ -0.2
VIPAS39-208ENST00000556412 ELMO2Q96JJ3 720 aa13.8□□□□□ -0.2
VIPAS39-208ENST00000556412 PANX3Q96QZ0 392 aa13.8□□□□□ -0.2
VIPAS39-208ENST00000556412 CPNE1Q99829 537 aa13.8□□□□□ -0.2
VIPAS39-208ENST00000556412 TAAR2Q9P1P5 351 aa13.8□□□□□ -0.2
VIPAS39-208ENST00000556412 TSR3Q9UJK0 312 aaKnown RBP13.8□□□□□ -0.2
VIPAS39-208ENST00000556412 PSMD13Q9UNM6 376 aa13.8□□□□□ -0.2
VIPAS39-208ENST00000556412 IKBKGQ9Y6K9 419 aa13.8□□□□□ -0.2
VIPAS39-208ENST00000556412 LMO7DNF2Z398 122 aa13.79□□□□□ -0.2
VIPAS39-208ENST00000556412 ERLIN1O75477 346 aa13.79□□□□□ -0.2
VIPAS39-208ENST00000556412 ABHD2P08910 425 aa13.79□□□□□ -0.2
VIPAS39-208ENST00000556412 ALPPL2P10696 532 aa13.79□□□□□ -0.2
VIPAS39-208ENST00000556412 CCR7P32248 378 aa13.79□□□□□ -0.2
VIPAS39-208ENST00000556412 HSD17B3P37058 310 aa13.79□□□□□ -0.2
VIPAS39-208ENST00000556412 PREPP48147 710 aa13.79□□□□□ -0.2
VIPAS39-208ENST00000556412 HSPA14Q0VDF9 509 aa13.79□□□□□ -0.2
VIPAS39-208ENST00000556412 NAB1Q13506 487 aa13.79□□□□□ -0.2
VIPAS39-208ENST00000556412 OTOAQ7RTW8 1153 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms