RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 FMO4P31512 558 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 CTBSQ01459 385 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 GSTM4Q03013 218 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 NAB1Q13506 487 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 C1orf61Q13536 156 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 INSCQ1MX18 579 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 MAP9Q49MG5 647 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 PTRHD1Q6GMV3 140 aaKnown RBP16.86■□□□□ 0.29
LIG1-204ENST00000542460 CNSTQ6PJW8 725 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 STRA8Q7Z7C7 330 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 AMZ2Q86W34 360 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 GPBAR1Q8TDU6 330 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 SAP25Q8TEE9 199 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 CAVIN3Q969G5 261 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 CCM2Q9BSQ5 444 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 TSSK1BQ9BXA7 367 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 GSDMCQ9BYG8 508 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 CAAP1Q9H8G2 361 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 TMEM9BQ9NQ34 198 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 TXNDC16Q9P2K2 825 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 PSAT1Q9Y617 370 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 CSNK1G3Q9Y6M4 447 aa16.86■□□□□ 0.29
LIG1-204ENST00000542460 PLXNB3Q9ULL4 1909 aa16.85■□□□□ 0.29
LIG1-204ENST00000542460 PI4KAP42356 2102 aa16.85■□□□□ 0.29
LIG1-204ENST00000542460 C17orf113A0A1B0GUU1 675 aa16.85■□□□□ 0.29
LIG1-204ENST00000542460 NEMP2A6NFY4 417 aa16.85■□□□□ 0.29
LIG1-204ENST00000542460 MGAT4DA6NG13 374 aa16.85■□□□□ 0.29
LIG1-204ENST00000542460 CDX4O14627 284 aaPredicted RBP16.85■□□□□ 0.29
LIG1-204ENST00000542460 PCDHGA12O60330 932 aa16.85■□□□□ 0.29
LIG1-204ENST00000542460 F7P08709 466 aaPredicted RBP16.85■□□□□ 0.29
LIG1-204ENST00000542460 ACP5P13686 325 aa16.85■□□□□ 0.29
LIG1-204ENST00000542460 PKMP14618 531 aaKnown RBP16.85■□□□□ 0.29
LIG1-204ENST00000542460 CD151P48509 253 aa16.85■□□□□ 0.29
LIG1-204ENST00000542460 IL9RQ01113 521 aa16.85■□□□□ 0.29
LIG1-204ENST00000542460 ILF2Q12905 390 aaKnown RBP16.85■□□□□ 0.29
LIG1-204ENST00000542460 SLC29A2Q14542 456 aa16.85■□□□□ 0.29
LIG1-204ENST00000542460 PPM1NQ8N819 430 aa16.85■□□□□ 0.29
LIG1-204ENST00000542460 MYRIPQ8NFW9 859 aa16.85■□□□□ 0.29
LIG1-204ENST00000542460 OR2L2Q8NH16 312 aa16.85■□□□□ 0.29
LIG1-204ENST00000542460 CPNE1Q99829 537 aa16.85■□□□□ 0.29
LIG1-204ENST00000542460 CCDC68Q9H2F9 335 aa16.85■□□□□ 0.29
LIG1-204ENST00000542460 RXFP3Q9NSD7 469 aa16.85■□□□□ 0.29
LIG1-204ENST00000542460 KLC4Q9NSK0 619 aa16.85■□□□□ 0.29
LIG1-204ENST00000542460 SLC23A2Q9UGH3 650 aa16.85■□□□□ 0.29
LIG1-204ENST00000542460 PLEKHM1Q9Y4G2 1056 aa16.85■□□□□ 0.29
LIG1-204ENST00000542460 ST14Q9Y5Y6 855 aa16.85■□□□□ 0.29
LIG1-204ENST00000542460 COMMD10Q9Y6G5 202 aa16.85■□□□□ 0.29
LIG1-204ENST00000542460 ZNF292O60281 2723 aa16.84■□□□□ 0.29
LIG1-204ENST00000542460 GVINP1Q7Z2Y8 2422 aa16.84■□□□□ 0.29
LIG1-204ENST00000542460 KNL1Q8NG31 2342 aa16.84■□□□□ 0.29
LIG1-204ENST00000542460 LMO7DNF2Z398 122 aa16.84■□□□□ 0.29
LIG1-204ENST00000542460 CLCNKAP51800 687 aa16.84■□□□□ 0.29
LIG1-204ENST00000542460 ARHGAP8P85298 464 aa16.84■□□□□ 0.29
LIG1-204ENST00000542460 SLC14A1Q13336 389 aa16.84■□□□□ 0.29
LIG1-204ENST00000542460 SUZ12Q15022 739 aaKnown RBP16.84■□□□□ 0.29
LIG1-204ENST00000542460 PLA2G4EQ3MJ16 856 aa16.84■□□□□ 0.29
LIG1-204ENST00000542460 CTSL3PQ5NE16 218 aa16.84■□□□□ 0.29
LIG1-204ENST00000542460 TAF8Q7Z7C8 310 aa16.84■□□□□ 0.29
LIG1-204ENST00000542460 GKN2Q86XP6 184 aa16.84■□□□□ 0.29
LIG1-204ENST00000542460 NRROSQ86YC3 692 aa16.84■□□□□ 0.29
LIG1-204ENST00000542460 SLC25A45Q8N413 288 aa16.84■□□□□ 0.29
LIG1-204ENST00000542460 CCL4L1Q8NHW4 92 aa16.84■□□□□ 0.29
LIG1-204ENST00000542460 UBLCP1Q8WVY7 318 aaPredicted RBP16.84■□□□□ 0.29
LIG1-204ENST00000542460 PANX3Q96QZ0 392 aa16.84■□□□□ 0.29
LIG1-204ENST00000542460 UCKL1Q9NWZ5 548 aa16.84■□□□□ 0.29
LIG1-204ENST00000542460 CORO1CQ9ULV4 474 aaPredicted RBP16.84■□□□□ 0.29
LIG1-204ENST00000542460 PCDHGB2Q9Y5G2 931 aa16.84■□□□□ 0.29
LIG1-204ENST00000542460 TRIM16O95361 564 aa16.83■□□□□ 0.28
LIG1-204ENST00000542460 CELA2BP08218 269 aaPredicted RBP16.83■□□□□ 0.28
LIG1-204ENST00000542460 AK4P27144 223 aaPredicted RBP16.83■□□□□ 0.28
LIG1-204ENST00000542460 GP5P40197 560 aa16.83■□□□□ 0.28
LIG1-204ENST00000542460 ACTR1BP42025 376 aa16.83■□□□□ 0.28
LIG1-204ENST00000542460 CSE1LP55060 971 aaKnown RBP16.83■□□□□ 0.28
LIG1-204ENST00000542460 ACTR1AP61163 376 aa16.83■□□□□ 0.28
LIG1-204ENST00000542460 DMPKQ09013 629 aa16.83■□□□□ 0.28
LIG1-204ENST00000542460 TCEA2Q15560 299 aa16.83■□□□□ 0.28
LIG1-204ENST00000542460 KLHL38Q2WGJ6 581 aa16.83■□□□□ 0.28
LIG1-204ENST00000542460 ZNF549Q6P9A3 640 aa16.83■□□□□ 0.28
LIG1-204ENST00000542460 LVRNQ6Q4G3 990 aa16.83■□□□□ 0.28
LIG1-204ENST00000542460 KANSL1Q7Z3B3 1105 aa16.83■□□□□ 0.28
LIG1-204ENST00000542460 GATAD2AQ86YP4 633 aa16.83■□□□□ 0.28
LIG1-204ENST00000542460 UHMK1Q8TAS1 419 aaKnown RBP16.83■□□□□ 0.28
LIG1-204ENST00000542460 EPB41L4BQ9H329 900 aa16.83■□□□□ 0.28
LIG1-204ENST00000542460 DOLKQ9UPQ8 538 aa16.83■□□□□ 0.28
LIG1-204ENST00000542460 KCNK6Q9Y257 313 aa16.83■□□□□ 0.28
LIG1-204ENST00000542460 DNAJC16Q9Y2G8 782 aa16.83■□□□□ 0.28
LIG1-204ENST00000542460 EP300Q09472 2414 aaPredicted RBP16.83■□□□□ 0.28
LIG1-204ENST00000542460 LAMA1P25391 3075 aa16.83■□□□□ 0.28
LIG1-204ENST00000542460 DMXL1Q9Y485 3027 aa16.83■□□□□ 0.28
LIG1-204ENST00000542460 IQCF5A8MTL0 148 aa16.82■□□□□ 0.28
LIG1-204ENST00000542460 YY2O15391 372 aa16.82■□□□□ 0.28
LIG1-204ENST00000542460 ERLIN1O75477 346 aa16.82■□□□□ 0.28
LIG1-204ENST00000542460 ANXA6P08133 673 aa16.82■□□□□ 0.28
LIG1-204ENST00000542460 CHRM3P20309 590 aa16.82■□□□□ 0.28
LIG1-204ENST00000542460 IDSP22304 550 aa16.82■□□□□ 0.28
LIG1-204ENST00000542460 PBLDP30039 288 aaPredicted RBP16.82■□□□□ 0.28
LIG1-204ENST00000542460 EFTUD2Q15029 972 aaKnown RBP eCLIP16.82■□□□□ 0.283e-6■■■■□ 20.1
LIG1-204ENST00000542460 BRD3Q15059 726 aa16.82■□□□□ 0.28
LIG1-204ENST00000542460 GRTP1Q5TC63 336 aa16.82■□□□□ 0.28
LIG1-204ENST00000542460 SLC30A9Q6PML9 568 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms