RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 SNAP29O95721 258 aa17.72■□□□□ 0.43
VIM-206ENST00000487938 CD160O95971 181 aa17.72■□□□□ 0.43
VIM-206ENST00000487938 CTPS1P17812 591 aa17.72■□□□□ 0.43
VIM-206ENST00000487938 MTPNP58546 118 aa17.72■□□□□ 0.43
VIM-206ENST00000487938 PRKG2Q13237 762 aa17.72■□□□□ 0.43
VIM-206ENST00000487938 PLCL1Q15111 1095 aa17.72■□□□□ 0.43
VIM-206ENST00000487938 SPATS1Q496A3 300 aa17.72■□□□□ 0.43
VIM-206ENST00000487938 KCTD21Q4G0X4 260 aa17.72■□□□□ 0.43
VIM-206ENST00000487938 FRA10AC1Q70Z53 315 aa17.72■□□□□ 0.43
VIM-206ENST00000487938 RNF180Q86T96 592 aa17.72■□□□□ 0.43
VIM-206ENST00000487938 ZFAND4Q86XD8 727 aa17.72■□□□□ 0.43
VIM-206ENST00000487938 TTC30BQ8N4P2 665 aa17.72■□□□□ 0.43
VIM-206ENST00000487938 DHRSXQ8N5I4 330 aa17.72■□□□□ 0.43
VIM-206ENST00000487938 ZNF382Q96SR6 550 aa17.72■□□□□ 0.43
VIM-206ENST00000487938 CHID1Q9BWS9 393 aa17.72■□□□□ 0.43
VIM-206ENST00000487938 PFDN4Q9NQP4 134 aa17.72■□□□□ 0.43
VIM-206ENST00000487938 TYW5A2RUC4 315 aaKnown RBP17.72■□□□□ 0.43
VIM-206ENST00000487938 RSL1D1O76021 490 aaKnown RBP17.72■□□□□ 0.43
VIM-206ENST00000487938 LDLRP01130 860 aa17.72■□□□□ 0.43
VIM-206ENST00000487938 FCGR1AP12314 374 aa17.72■□□□□ 0.43
VIM-206ENST00000487938 PSMA3P25788 255 aa17.72■□□□□ 0.43
VIM-206ENST00000487938 RPS9P46781 194 aaKnown RBP17.72■□□□□ 0.43
VIM-206ENST00000487938 MRPL19P49406 292 aaKnown RBP17.72■□□□□ 0.43
VIM-206ENST00000487938 CLCN7P51798 805 aa17.72■□□□□ 0.43
VIM-206ENST00000487938 AASDHQ4L235 1098 aaPredicted RBP17.72■□□□□ 0.43
VIM-206ENST00000487938 HID1Q8IV36 788 aa17.72■□□□□ 0.43
VIM-206ENST00000487938 TBC1D21Q8IYX1 336 aa17.72■□□□□ 0.43
VIM-206ENST00000487938 OR4F6Q8NGB9 312 aa17.72■□□□□ 0.43
VIM-206ENST00000487938 SEPT8Q92599 483 aa17.72■□□□□ 0.43
VIM-206ENST00000487938 KCNJ9Q92806 393 aa17.72■□□□□ 0.43
VIM-206ENST00000487938 EID2BQ96D98 161 aa17.72■□□□□ 0.43
VIM-206ENST00000487938 GLT1D1Q96MS3 346 aa17.72■□□□□ 0.43
VIM-206ENST00000487938 MUC13Q9H3R2 512 aa17.72■□□□□ 0.43
VIM-206ENST00000487938 COMMD8Q9NX08 183 aa17.72■□□□□ 0.43
VIM-206ENST00000487938 SMPD3Q9NY59 655 aaPredicted RBP17.72■□□□□ 0.43
VIM-206ENST00000487938 PHF24Q9UPV7 400 aa17.72■□□□□ 0.43
VIM-206ENST00000487938 PCDHB9Q9Y5E1 797 aa17.72■□□□□ 0.43
VIM-206ENST00000487938 OR7A17O14581 309 aa17.71■□□□□ 0.43
VIM-206ENST00000487938 STC2O76061 302 aa17.71■□□□□ 0.43
VIM-206ENST00000487938 GUCA1CO95843 209 aa17.71■□□□□ 0.43
VIM-206ENST00000487938 UMPSP11172 480 aa17.71■□□□□ 0.43
VIM-206ENST00000487938 HTR1EP28566 365 aa17.71■□□□□ 0.43
VIM-206ENST00000487938 CLCN4P51793 760 aa17.71■□□□□ 0.43
VIM-206ENST00000487938 ESRRGP62508 458 aa17.71■□□□□ 0.43
VIM-206ENST00000487938 CTBSQ01459 385 aa17.71■□□□□ 0.43
VIM-206ENST00000487938 NR6A1Q15406 480 aa17.71■□□□□ 0.43
VIM-206ENST00000487938 CYBRD1Q53TN4 286 aa17.71■□□□□ 0.43
VIM-206ENST00000487938 OTUD3Q5T2D3 398 aaPredicted RBP17.71■□□□□ 0.43
VIM-206ENST00000487938 HECTD3Q5T447 861 aa17.71■□□□□ 0.43
VIM-206ENST00000487938 DLEU7Q6UYE1 221 aa17.71■□□□□ 0.43
VIM-206ENST00000487938 GOLGA7Q7Z5G4 137 aa17.71■□□□□ 0.43
VIM-206ENST00000487938 PAPD5Q8NDF8 572 aaKnown RBP17.71■□□□□ 0.43
VIM-206ENST00000487938 FBXO22Q8NEZ5 403 aa17.71■□□□□ 0.43
VIM-206ENST00000487938 DBF4BQ8NFT6 615 aa17.71■□□□□ 0.43
VIM-206ENST00000487938 GAB3Q8WWW8 586 aa17.71■□□□□ 0.43
VIM-206ENST00000487938 RNF38Q9H0F5 515 aa17.71■□□□□ 0.43
VIM-206ENST00000487938 ZNF840PA6NDX5 716 aa17.7■□□□□ 0.42
VIM-206ENST00000487938 ALPIP09923 528 aa17.7■□□□□ 0.42
VIM-206ENST00000487938 BMP1P13497 986 aa17.7■□□□□ 0.42
VIM-206ENST00000487938 VARSP26640 1264 aaKnown RBP17.7■□□□□ 0.42
VIM-206ENST00000487938 PTGER3P43115 390 aa17.7■□□□□ 0.42
VIM-206ENST00000487938 YAP1P46937 504 aaKnown RBP17.7■□□□□ 0.42
VIM-206ENST00000487938 NAA20P61599 178 aa17.7■□□□□ 0.42
VIM-206ENST00000487938 MTA1Q13330 715 aa17.7■□□□□ 0.42
VIM-206ENST00000487938 ABRAXAS2Q15018 415 aa17.7■□□□□ 0.42
VIM-206ENST00000487938 ZIK1Q3SY52 487 aaPredicted RBP17.7■□□□□ 0.42
VIM-206ENST00000487938 RFTN2Q52LD8 501 aaPredicted RBP17.7■□□□□ 0.42
VIM-206ENST00000487938 ATXN7L2Q5T6C5 722 aaPredicted RBP17.7■□□□□ 0.42
VIM-206ENST00000487938 TNIP2Q8NFZ5 429 aa17.7■□□□□ 0.42
VIM-206ENST00000487938 BCL7CQ8WUZ0 217 aaPredicted RBP17.7■□□□□ 0.42
VIM-206ENST00000487938 ISG20Q96AZ6 181 aaKnown RBP17.7■□□□□ 0.42
VIM-206ENST00000487938 TTLL2Q9BWV7 592 aa17.7■□□□□ 0.42
VIM-206ENST00000487938 NPLQ9BXD5 320 aaPredicted RBP17.7■□□□□ 0.42
VIM-206ENST00000487938 LRRC3Q9BY71 257 aa17.7■□□□□ 0.42
VIM-206ENST00000487938 ACTL8Q9H568 366 aa17.7■□□□□ 0.42
VIM-206ENST00000487938 PREBQ9HCU5 417 aa17.7■□□□□ 0.42
VIM-206ENST00000487938 RNF186Q9NXI6 227 aa17.7■□□□□ 0.42
VIM-206ENST00000487938 TUBA8Q9NY65 449 aaPredicted RBP17.7■□□□□ 0.42
VIM-206ENST00000487938 CDC14AQ9UNH5 594 aa17.7■□□□□ 0.42
VIM-206ENST00000487938 KANSL1LA0AUZ9 987 aa17.7■□□□□ 0.42
VIM-206ENST00000487938 ENO2P09104 434 aaPredicted RBP17.7■□□□□ 0.42
VIM-206ENST00000487938 PCNAP12004 261 aa17.7■□□□□ 0.42
VIM-206ENST00000487938 MZF1P28698 734 aaPredicted RBP17.7■□□□□ 0.42
VIM-206ENST00000487938 CA5AP35218 305 aa17.7■□□□□ 0.42
VIM-206ENST00000487938 CAPGP40121 348 aa17.7■□□□□ 0.42
VIM-206ENST00000487938 PIK3CGP48736 1102 aa17.7■□□□□ 0.42
VIM-206ENST00000487938 AP5B1Q2VPB7 878 aa17.7■□□□□ 0.42
VIM-206ENST00000487938 ZBED5Q49AG3 693 aa17.7■□□□□ 0.42
VIM-206ENST00000487938 CXorf57Q6NSI4 855 aaKnown RBP17.7■□□□□ 0.42
VIM-206ENST00000487938 TMEM214Q6NUQ4 689 aaKnown RBP17.7■□□□□ 0.42
VIM-206ENST00000487938 NCEH1Q6PIU2 408 aa17.7■□□□□ 0.42
VIM-206ENST00000487938 CYP20A1Q6UW02 462 aa17.7■□□□□ 0.42
VIM-206ENST00000487938 CHST15Q7LFX5 561 aaPredicted RBP17.7■□□□□ 0.42
VIM-206ENST00000487938 PROSER1Q86XN7 944 aa17.7■□□□□ 0.42
VIM-206ENST00000487938 NSMCE2Q96MF7 247 aa17.7■□□□□ 0.42
VIM-206ENST00000487938 TTPALQ9BTX7 342 aa17.7■□□□□ 0.42
VIM-206ENST00000487938 GPR63Q9BZJ6 419 aa17.7■□□□□ 0.42
VIM-206ENST00000487938 P2RY12Q9H244 342 aa17.7■□□□□ 0.42
VIM-206ENST00000487938 EVLQ9UI08 416 aaPredicted RBP17.7■□□□□ 0.42
VIM-206ENST00000487938 POLR3HQ9Y535 204 aaPredicted RBP17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms