RNA–Protein interactions for RNA: ENST00000482647.5

SEC13-217, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 2

Gene SEC13, Length 782 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-217ENST00000482647 MT-CO3P00414 261 aa20.54■□□□□ 0.88
SEC13-217ENST00000482647 RPL10P27635 214 aaKnown RBP20.54■□□□□ 0.88
SEC13-217ENST00000482647 PBLDP30039 288 aaPredicted RBP20.54■□□□□ 0.88
SEC13-217ENST00000482647 GPR3P46089 330 aa20.54■□□□□ 0.88
SEC13-217ENST00000482647 TTPAP49638 278 aa20.54■□□□□ 0.88
SEC13-217ENST00000482647 TUBB2AQ13885 445 aa20.54■□□□□ 0.88
SEC13-217ENST00000482647 SEPT7Q16181 437 aaKnown RBP20.54■□□□□ 0.88
SEC13-217ENST00000482647 WHAMMP3Q1A5X7 153 aa20.54■□□□□ 0.88
SEC13-217ENST00000482647 CDCP2Q5VXM1 449 aa20.54■□□□□ 0.88
SEC13-217ENST00000482647 METRNLQ641Q3 311 aa20.54■□□□□ 0.88
SEC13-217ENST00000482647 HIBCHQ6NVY1 386 aaPredicted RBP20.54■□□□□ 0.88
SEC13-217ENST00000482647 CCNJLQ8IV13 435 aa20.54■□□□□ 0.88
SEC13-217ENST00000482647 BBOF1Q8ND07 529 aa20.54■□□□□ 0.88
SEC13-217ENST00000482647 SH3KBP1Q96B97 665 aa20.54■□□□□ 0.88
SEC13-217ENST00000482647 SIGLEC10Q96LC7 697 aa20.54■□□□□ 0.88
SEC13-217ENST00000482647 CCM2Q9BSQ5 444 aa20.54■□□□□ 0.88
SEC13-217ENST00000482647 TUBB2BQ9BVA1 445 aa20.54■□□□□ 0.88
SEC13-217ENST00000482647 SARS2Q9NP81 518 aaKnown RBP20.54■□□□□ 0.88
SEC13-217ENST00000482647 ACSL5Q9ULC5 683 aa20.54■□□□□ 0.88
SEC13-217ENST00000482647 ZNF106Q9H2Y7 1883 aaKnown RBP20.54■□□□□ 0.88
SEC13-217ENST00000482647 C17orf113A0A1B0GUU1 675 aa20.53■□□□□ 0.88
SEC13-217ENST00000482647 FAM149AA5PLN7 773 aa20.53■□□□□ 0.88
SEC13-217ENST00000482647 F8W8V4 182 aa20.53■□□□□ 0.88
SEC13-217ENST00000482647 PPM1DO15297 605 aa20.53■□□□□ 0.88
SEC13-217ENST00000482647 TCEA3O75764 348 aa20.53■□□□□ 0.88
SEC13-217ENST00000482647 SEC31AO94979 1220 aaKnown RBP20.53■□□□□ 0.88
SEC13-217ENST00000482647 RPLP0P05388 317 aaKnown RBP20.53■□□□□ 0.88
SEC13-217ENST00000482647 GSTM1P09488 218 aa20.53■□□□□ 0.88
SEC13-217ENST00000482647 XRCC1P18887 633 aaPredicted RBP20.53■□□□□ 0.88
SEC13-217ENST00000482647 HALP42357 657 aa20.53■□□□□ 0.88
SEC13-217ENST00000482647 DRG2P55039 364 aaKnown RBP20.53■□□□□ 0.88
SEC13-217ENST00000482647 CLDN6P56747 220 aa20.53■□□□□ 0.88
SEC13-217ENST00000482647 CCL7P80098 99 aa20.53■□□□□ 0.88
SEC13-217ENST00000482647 GSTM4Q03013 218 aa20.53■□□□□ 0.88
SEC13-217ENST00000482647 NFE2L1Q14494 772 aa20.53■□□□□ 0.88
SEC13-217ENST00000482647 ANKRD20A4Q4UJ75 823 aa20.53■□□□□ 0.88
SEC13-217ENST00000482647 KIAA0930Q6ICG6 404 aaPredicted RBP20.53■□□□□ 0.88
SEC13-217ENST00000482647 MRNIPQ6NTE8 343 aa20.53■□□□□ 0.88
SEC13-217ENST00000482647 CCNI2Q6ZMN8 369 aaPredicted RBP20.53■□□□□ 0.88
SEC13-217ENST00000482647 FAM83HQ6ZRV2 1179 aaPredicted RBP20.53■□□□□ 0.88
SEC13-217ENST00000482647 SPRED1Q7Z699 444 aa20.53■□□□□ 0.88
SEC13-217ENST00000482647 SDCCAG8Q86SQ7 713 aaPredicted RBP20.53■□□□□ 0.88
SEC13-217ENST00000482647 TMEM135Q86UB9 458 aa20.53■□□□□ 0.88
SEC13-217ENST00000482647 CFAP206Q8IYR0 622 aa20.53■□□□□ 0.88
SEC13-217ENST00000482647 PDIK1LQ8N165 341 aa20.53■□□□□ 0.88
SEC13-217ENST00000482647 OTUD6BQ8N6M0 293 aa20.53■□□□□ 0.88
SEC13-217ENST00000482647 DCBLD1Q8N8Z6 715 aa20.53■□□□□ 0.88
SEC13-217ENST00000482647 STAMBPL1Q96FJ0 436 aa20.53■□□□□ 0.88
SEC13-217ENST00000482647 ERP44Q9BS26 406 aa20.53■□□□□ 0.88
SEC13-217ENST00000482647 LRRN3Q9H3W5 708 aa20.53■□□□□ 0.88
SEC13-217ENST00000482647 SYNDIG1Q9H7V2 258 aa20.53■□□□□ 0.88
SEC13-217ENST00000482647 CPNE7Q9UBL6 633 aa20.53■□□□□ 0.88
SEC13-217ENST00000482647 SNX24Q9Y343 169 aa20.53■□□□□ 0.88
SEC13-217ENST00000482647 RPS6KL1Q9Y6S9 549 aa20.53■□□□□ 0.88
SEC13-217ENST00000482647 RAD51CO43502 376 aa20.52■□□□□ 0.88
SEC13-217ENST00000482647 USP1O94782 785 aa20.52■□□□□ 0.88
SEC13-217ENST00000482647 ALDH4A1P30038 563 aa20.52■□□□□ 0.88
SEC13-217ENST00000482647 ARCN1P48444 511 aaKnown RBP20.52■□□□□ 0.88
SEC13-217ENST00000482647 ITGA8P53708 1063 aa20.52■□□□□ 0.88
SEC13-217ENST00000482647 MRPS25P82663 173 aaKnown RBP20.52■□□□□ 0.88
SEC13-217ENST00000482647 HHEXQ03014 270 aa20.52■□□□□ 0.88
SEC13-217ENST00000482647 TARDBPQ13148 414 aaKnown RBP eCLIP20.52■□□□□ 0.88
SEC13-217ENST00000482647 SPIDRQ14159 915 aa20.52■□□□□ 0.88
SEC13-217ENST00000482647 SEMA3AQ14563 771 aa20.52■□□□□ 0.88
SEC13-217ENST00000482647 NR1D2Q14995 579 aa20.52■□□□□ 0.88
SEC13-217ENST00000482647 CHCHD2P9Q5T1J5 151 aaPredicted RBP20.52■□□□□ 0.88
SEC13-217ENST00000482647 RBM44Q6ZP01 1051 aaKnown RBP20.52■□□□□ 0.88
SEC13-217ENST00000482647 TRIM48Q8IWZ4 208 aa20.52■□□□□ 0.88
SEC13-217ENST00000482647 AGGF1Q8N302 714 aaeCLIP20.52■□□□□ 0.88
SEC13-217ENST00000482647 KIF18AQ8NI77 898 aa20.52■□□□□ 0.88
SEC13-217ENST00000482647 HM13Q8TCT9 377 aa20.52■□□□□ 0.88
SEC13-217ENST00000482647 ZNF669Q96BR6 464 aaPredicted RBP20.52■□□□□ 0.88
SEC13-217ENST00000482647 FCRL3Q96P31 734 aaPredicted RBP20.52■□□□□ 0.88
SEC13-217ENST00000482647 DEPDC7Q96QD5 511 aa20.52■□□□□ 0.88
SEC13-217ENST00000482647 GFM1Q96RP9 751 aaKnown RBP20.52■□□□□ 0.88
SEC13-217ENST00000482647 SLC38A3Q99624 504 aa20.52■□□□□ 0.88
SEC13-217ENST00000482647 SCHIP1Q9P0W5 487 aaPredicted RBP20.52■□□□□ 0.88
SEC13-217ENST00000482647 MARCH4Q9P2E8 410 aaPredicted RBP20.52■□□□□ 0.88
SEC13-217ENST00000482647 NTN3O00634 580 aaPredicted RBP20.51■□□□□ 0.87
SEC13-217ENST00000482647 PFDN6O15212 129 aa20.51■□□□□ 0.87
SEC13-217ENST00000482647 B4GAT1O43505 415 aa20.51■□□□□ 0.87
SEC13-217ENST00000482647 OR1I1O60431 355 aa20.51■□□□□ 0.87
SEC13-217ENST00000482647 NDUFS3O75489 264 aa20.51■□□□□ 0.87
SEC13-217ENST00000482647 VIPP01282 170 aa20.51■□□□□ 0.87
SEC13-217ENST00000482647 POLBP06746 335 aa20.51■□□□□ 0.87
SEC13-217ENST00000482647 OR56A5P0C7T3 313 aa20.51■□□□□ 0.87
SEC13-217ENST00000482647 BRAFP15056 766 aa20.51■□□□□ 0.87
SEC13-217ENST00000482647 ARNTP27540 789 aa20.51■□□□□ 0.87
SEC13-217ENST00000482647 RPL21P46778 160 aaKnown RBP20.51■□□□□ 0.87
SEC13-217ENST00000482647 OR1D5P58170 312 aa20.51■□□□□ 0.87
SEC13-217ENST00000482647 UBE2IP63279 158 aaKnown RBP20.51■□□□□ 0.87
SEC13-217ENST00000482647 NEPROQ6NW34 567 aa20.51■□□□□ 0.87
SEC13-217ENST00000482647 LDB1Q86U70 411 aaPredicted RBP20.51■□□□□ 0.87
SEC13-217ENST00000482647 TCF12Q99081 682 aa20.51■□□□□ 0.87
SEC13-217ENST00000482647 TRIM56Q9BRZ2 755 aaKnown RBP20.51■□□□□ 0.87
SEC13-217ENST00000482647 NAT9Q9BTE0 207 aa20.51■□□□□ 0.87
SEC13-217ENST00000482647 LDHAL6BQ9BYZ2 381 aaPredicted RBP20.51■□□□□ 0.87
SEC13-217ENST00000482647 KCNK4Q9NYG8 393 aa20.51■□□□□ 0.87
SEC13-217ENST00000482647 ZNF624Q9P2J8 865 aaPredicted RBP20.51■□□□□ 0.87
SEC13-217ENST00000482647 FAM8A1Q9UBU6 413 aa20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms