RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 MAELQ96JY0 434 aaKnown RBP12.77□□□□□ -0.36
COL6A3-206ENST00000409809 FN3KQ9H479 309 aa12.77□□□□□ -0.36
COL6A3-206ENST00000409809 A8MUI8 341 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 DCLK1O15075 740 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 MIPP30301 263 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 BUD31P41223 144 aaPredicted RBP12.77□□□□□ -0.37
COL6A3-206ENST00000409809 CACNB3P54284 484 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 PAOXQ6QHF9 649 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 DSG4Q86SJ6 1040 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 OR52K1Q8NGK4 314 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 CLP1Q92989 425 aaKnown RBP12.77□□□□□ -0.37
COL6A3-206ENST00000409809 VMP1Q96GC9 406 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 C3orf14Q9HBI5 128 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 POPDC2Q9HBU9 364 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 HSPE1-MOB4S4R3N1 261 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 CHURC1-FNTBB4DL54 471 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 OR1I1O60431 355 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 SNAP29O95721 258 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 THEGLP0DJG4 465 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 IRF8Q02556 426 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 ELAVL2Q12926 359 aaKnown RBP12.77□□□□□ -0.37
COL6A3-206ENST00000409809 OGFOD2Q6N063 350 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 FAM199XQ6PEV8 388 aaPredicted RBP12.77□□□□□ -0.37
COL6A3-206ENST00000409809 DCDC5Q6ZRR9 648 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 SPATA22Q8NHS9 363 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 SLCO2A1Q92959 643 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 HDAC10Q969S8 669 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 PTPRUQ92729 1446 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 HSBP1L1C9JCN9 74 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 RFPL2O75678 378 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 IGSF6O95976 241 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 ALDH3B2P48448 385 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 UBXN11Q5T124 520 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 ATXN7L2Q5T6C5 722 aaPredicted RBP12.77□□□□□ -0.37
COL6A3-206ENST00000409809 CXorf57Q6NSI4 855 aaKnown RBP12.77□□□□□ -0.37
COL6A3-206ENST00000409809 FAM122CQ6P4D5 195 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 FAM171BQ6P995 826 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 DRICH1Q6PGQ1 229 aaPredicted RBP12.77□□□□□ -0.37
COL6A3-206ENST00000409809 C4orf19Q8IY42 314 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 ACBD4Q8NC06 268 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 RNF31Q96EP0 1072 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 ERVK-5Q9HDB9 667 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 NKIRAS2Q9NYR9 191 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.77□□□□□ -0.37
COL6A3-206ENST00000409809 NPAP1Q9NZP6 1156 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 DENRO43583 198 aaKnown RBP12.77□□□□□ -0.37
COL6A3-206ENST00000409809 PEX11AO75192 247 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 HTR2BP41595 481 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 SV2AQ7L0J3 742 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 PNLDC1Q8NA58 520 aaKnown RBP12.77□□□□□ -0.37
COL6A3-206ENST00000409809 UBA3Q8TBC4 463 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 EPS8L1Q8TE68 723 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 NCSTNQ92542 709 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 ASB4Q9Y574 426 aa12.77□□□□□ -0.37
COL6A3-206ENST00000409809 CEP170BQ9Y4F5 1589 aaPredicted RBP12.77□□□□□ -0.37
COL6A3-206ENST00000409809 LRRN3E7EW58 273 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 RHOCP08134 193 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 CYP3A5P20815 502 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 VAMP2P63027 116 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 ERFEQ4G0M1 354 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 ATP13A4Q4VNC1 1196 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 GJB7Q6PEY0 223 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 LRRN1Q6UXK5 716 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 OR2L2Q8NH16 312 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 S100A16Q96FQ6 103 aaKnown RBP12.76□□□□□ -0.37
COL6A3-206ENST00000409809 GON7Q9BXV9 100 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 LRRN3Q9H3W5 708 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 ABCB9Q9NP78 766 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 VPS28Q9UK41 221 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 GCATO75600 419 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 ABL2P42684 1182 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 TOB1P50616 345 aaPredicted RBP12.76□□□□□ -0.37
COL6A3-206ENST00000409809 COLEC12Q5KU26 742 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 FAM98AQ8NCA5 519 aaKnown RBP12.76□□□□□ -0.37
COL6A3-206ENST00000409809 PNMA5Q96PV4 448 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 ELOVL4Q9GZR5 314 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 KCNN3Q9UGI6 736 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 INMTO95050 263 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 SLC25A27O95847 323 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 SRCP12931 536 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 TAGLNQ01995 201 aaKnown RBP12.76□□□□□ -0.37
COL6A3-206ENST00000409809 LSAMPQ13449 338 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 HMGN3Q15651 99 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 RAB41Q5JT25 222 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 KLHL6Q8WZ60 621 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 C7orf50Q9BRJ6 194 aaKnown RBP12.76□□□□□ -0.37
COL6A3-206ENST00000409809 PLEKHA1Q9HB21 404 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 ITM2AO43736 263 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 ATE1O95260 518 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 GRK1Q15835 563 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 RBFAQ8N0V3 343 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 SPOCK2Q92563 424 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 FBXO32Q969P5 355 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 COQ10BQ9H8M1 238 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 HCN3Q9P1Z3 774 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 NDUFB5O43674 189 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 IL3P08700 152 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 EPORP19235 508 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 RYKP34925 604 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 TMEM199Q8N511 208 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms