RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 PKMP14618 531 aaKnown RBP21.82■■□□□ 1.08
SDC3-202ENST00000339394 GP5P40197 560 aa21.82■■□□□ 1.08
SDC3-202ENST00000339394 ATXN3P54252 364 aaPredicted RBP21.82■■□□□ 1.08
SDC3-202ENST00000339394 IL9RQ01113 521 aa21.82■■□□□ 1.08
SDC3-202ENST00000339394 CTBSQ01459 385 aa21.82■■□□□ 1.08
SDC3-202ENST00000339394 BNIP3Q12983 259 aa21.82■■□□□ 1.08
SDC3-202ENST00000339394 C1orf61Q13536 156 aa21.82■■□□□ 1.08
SDC3-202ENST00000339394 LRP8Q14114 963 aa21.82■■□□□ 1.08
SDC3-202ENST00000339394 KLHL38Q2WGJ6 581 aa21.82■■□□□ 1.08
SDC3-202ENST00000339394 ZC3HC1Q86WB0 502 aaKnown RBP21.82■■□□□ 1.08
SDC3-202ENST00000339394 MREGQ8N565 214 aa21.82■■□□□ 1.08
SDC3-202ENST00000339394 MINDY1Q8N5J2 469 aa21.82■■□□□ 1.08
SDC3-202ENST00000339394 ATXN7L3BQ96GX2 97 aa21.82■■□□□ 1.08
SDC3-202ENST00000339394 GULP1Q9UBP9 304 aa21.82■■□□□ 1.08
SDC3-202ENST00000339394 ZFHX2Q9C0A1 2572 aaPredicted RBP21.81■■□□□ 1.08
SDC3-202ENST00000339394 CELA2BP08218 269 aaPredicted RBP21.81■■□□□ 1.08
SDC3-202ENST00000339394 INSCQ1MX18 579 aa21.81■■□□□ 1.08
SDC3-202ENST00000339394 AMZ2Q86W34 360 aa21.81■■□□□ 1.08
SDC3-202ENST00000339394 GPBAR1Q8TDU6 330 aa21.81■■□□□ 1.08
SDC3-202ENST00000339394 NDNQ99608 321 aa21.81■■□□□ 1.08
SDC3-202ENST00000339394 TIMM29Q9BSF4 260 aa21.81■■□□□ 1.08
SDC3-202ENST00000339394 CCM2Q9BSQ5 444 aa21.81■■□□□ 1.08
SDC3-202ENST00000339394 AARSD1Q9BTE6 412 aaKnown RBP21.81■■□□□ 1.08
SDC3-202ENST00000339394 CCDC68Q9H2F9 335 aa21.81■■□□□ 1.08
SDC3-202ENST00000339394 RHOJQ9H4E5 214 aa21.81■■□□□ 1.08
SDC3-202ENST00000339394 RXFP3Q9NSD7 469 aa21.81■■□□□ 1.08
SDC3-202ENST00000339394 KLC4Q9NSK0 619 aa21.81■■□□□ 1.08
SDC3-202ENST00000339394 SPASTQ9UBP0 616 aa21.81■■□□□ 1.08
SDC3-202ENST00000339394 EXOC1LA0A1B0GW35 172 aa21.8■■□□□ 1.08
SDC3-202ENST00000339394 F8W8V4 182 aa21.8■■□□□ 1.08
SDC3-202ENST00000339394 H3BMM5 538 aa21.8■■□□□ 1.08
SDC3-202ENST00000339394 TRIM16O95361 564 aa21.8■■□□□ 1.08
SDC3-202ENST00000339394 FTH1P02794 183 aa21.8■■□□□ 1.08
SDC3-202ENST00000339394 DGKAP23743 735 aa21.8■■□□□ 1.08
SDC3-202ENST00000339394 AK4P27144 223 aaPredicted RBP21.8■■□□□ 1.08
SDC3-202ENST00000339394 PBLDP30039 288 aaPredicted RBP21.8■■□□□ 1.08
SDC3-202ENST00000339394 CSE1LP55060 971 aaKnown RBP21.8■■□□□ 1.08
SDC3-202ENST00000339394 ILF3Q12906 894 aaKnown RBP eCLIP21.8■■□□□ 1.08
SDC3-202ENST00000339394 GRTP1Q5TC63 336 aa21.8■■□□□ 1.08
SDC3-202ENST00000339394 NRROSQ86YC3 692 aa21.8■■□□□ 1.08
SDC3-202ENST00000339394 KRT222Q8N1A0 295 aa21.8■■□□□ 1.08
SDC3-202ENST00000339394 ZNF548Q8NEK5 533 aaPredicted RBP21.8■■□□□ 1.08
SDC3-202ENST00000339394 OR2L2Q8NH16 312 aa21.8■■□□□ 1.08
SDC3-202ENST00000339394 LKAAEAR1Q8TD35 194 aa21.8■■□□□ 1.08
SDC3-202ENST00000339394 LMX1AQ8TE12 382 aa21.8■■□□□ 1.08
SDC3-202ENST00000339394 HNRNPLLQ8WVV9 542 aaKnown RBP21.8■■□□□ 1.08
SDC3-202ENST00000339394 SLC44A1Q8WWI5 657 aa21.8■■□□□ 1.08
SDC3-202ENST00000339394 PAFAH2Q99487 392 aa21.8■■□□□ 1.08
SDC3-202ENST00000339394 RBBP8Q99708 897 aa21.8■■□□□ 1.08
SDC3-202ENST00000339394 UCKL1Q9NWZ5 548 aa21.8■■□□□ 1.08
SDC3-202ENST00000339394 DNAJC16Q9Y2G8 782 aa21.8■■□□□ 1.08
SDC3-202ENST00000339394 MED16Q9Y2X0 877 aa21.8■■□□□ 1.08
SDC3-202ENST00000339394 PI4KAP42356 2102 aa21.8■■□□□ 1.08
SDC3-202ENST00000339394 MGAT4DA6NG13 374 aa21.79■■□□□ 1.08
SDC3-202ENST00000339394 POC1B-GALNT4F8VUJ3 575 aa21.79■■□□□ 1.08
SDC3-202ENST00000339394 NIPSNAP2O75323 286 aa21.79■■□□□ 1.08
SDC3-202ENST00000339394 SHBGP04278 402 aa21.79■■□□□ 1.08
SDC3-202ENST00000339394 ITGB6P18564 788 aa21.79■■□□□ 1.08
SDC3-202ENST00000339394 CHRM3P20309 590 aa21.79■■□□□ 1.08
SDC3-202ENST00000339394 EPHA8P29322 1005 aaPredicted RBP21.79■■□□□ 1.08
SDC3-202ENST00000339394 ARHGAP8P85298 464 aa21.79■■□□□ 1.08
SDC3-202ENST00000339394 ELOCQ15369 112 aa21.79■■□□□ 1.08
SDC3-202ENST00000339394 BEND6Q5SZJ8 279 aaPredicted RBP21.79■■□□□ 1.08
SDC3-202ENST00000339394 RBM20Q5T481 1227 aaKnown RBP21.79■■□□□ 1.08
SDC3-202ENST00000339394 SLC25A45Q8N413 288 aa21.79■■□□□ 1.08
SDC3-202ENST00000339394 SAP25Q8TEE9 199 aa21.79■■□□□ 1.08
SDC3-202ENST00000339394 KCNJ9Q92806 393 aa21.79■■□□□ 1.08
SDC3-202ENST00000339394 FAM136AQ96C01 138 aa21.79■■□□□ 1.08
SDC3-202ENST00000339394 VPS39Q96JC1 886 aa21.79■■□□□ 1.08
SDC3-202ENST00000339394 PANX3Q96QZ0 392 aa21.79■■□□□ 1.08
SDC3-202ENST00000339394 CORO1CQ9ULV4 474 aaPredicted RBP21.79■■□□□ 1.08
SDC3-202ENST00000339394 KCNK6Q9Y257 313 aa21.79■■□□□ 1.08
SDC3-202ENST00000339394 COMMD10Q9Y6G5 202 aa21.79■■□□□ 1.08
SDC3-202ENST00000339394 PCDH15Q96QU1 1955 aa21.79■■□□□ 1.08
SDC3-202ENST00000339394 C17orf113A0A1B0GUU1 675 aa21.78■■□□□ 1.08
SDC3-202ENST00000339394 YKT6O15498 198 aa21.78■■□□□ 1.08
SDC3-202ENST00000339394 AQP9O43315 295 aa21.78■■□□□ 1.08
SDC3-202ENST00000339394 MSH2P43246 934 aa21.78■■□□□ 1.08
SDC3-202ENST00000339394 CCT8P50990 548 aa21.78■■□□□ 1.08
SDC3-202ENST00000339394 NFE2L1Q14494 772 aa21.78■■□□□ 1.08
SDC3-202ENST00000339394 ZNF658BQ4V348 819 aaPredicted RBP21.78■■□□□ 1.08
SDC3-202ENST00000339394 SLC30A9Q6PML9 568 aa21.78■■□□□ 1.08
SDC3-202ENST00000339394 PRR23CQ6ZRP0 262 aa21.78■■□□□ 1.08
SDC3-202ENST00000339394 CFAP206Q8IYR0 622 aa21.78■■□□□ 1.08
SDC3-202ENST00000339394 FSTL5Q8N475 847 aaPredicted RBP21.78■■□□□ 1.08
SDC3-202ENST00000339394 GPATCH11Q8N954 259 aa21.78■■□□□ 1.08
SDC3-202ENST00000339394 ACVR1CQ8NER5 493 aa21.78■■□□□ 1.08
SDC3-202ENST00000339394 TSSK1BQ9BXA7 367 aa21.78■■□□□ 1.08
SDC3-202ENST00000339394 GSDMCQ9BYG8 508 aa21.78■■□□□ 1.08
SDC3-202ENST00000339394 FAM8A1Q9UBU6 413 aa21.78■■□□□ 1.08
SDC3-202ENST00000339394 KLHL33A6NCF5 533 aa21.78■■□□□ 1.08
SDC3-202ENST00000339394 E5RI56 91 aa21.78■■□□□ 1.08
SDC3-202ENST00000339394 CDX4O14627 284 aaPredicted RBP21.78■■□□□ 1.08
SDC3-202ENST00000339394 KCNJ13O60928 360 aa21.78■■□□□ 1.08
SDC3-202ENST00000339394 GSTM1P09488 218 aa21.78■■□□□ 1.08
SDC3-202ENST00000339394 VCLP18206 1134 aa21.78■■□□□ 1.08
SDC3-202ENST00000339394 CCR7P32248 378 aa21.78■■□□□ 1.08
SDC3-202ENST00000339394 SPRP35270 261 aaPredicted RBP21.78■■□□□ 1.08
SDC3-202ENST00000339394 ACTR1BP42025 376 aa21.78■■□□□ 1.08
SDC3-202ENST00000339394 LIMK2P53671 638 aa21.78■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms