RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 TMEM248Q9NWD8 314 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 FAM8A1Q9UBU6 413 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 PFDN6O15212 129 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 CST1P01037 141 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 FGF4P08620 206 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 UROSP10746 265 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 IL12AP29459 219 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 HUNKP57058 714 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 HMGCS1Q01581 520 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 DUSP4Q13115 394 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 TAF12Q16514 161 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 GALNT18Q6P9A2 607 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 GCNT7Q6ZNI0 430 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 DENND1CQ8IV53 801 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 ABI1Q8IZP0 508 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 ULK4Q96C45 1275 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 TRIM54Q9BYV2 358 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 GPR63Q9BZJ6 419 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 UBA2Q9UBT2 640 aaPredicted RBP12.5□□□□□ -0.41
LIG1-201ENST00000263274 PCDHA9Q9Y5H5 950 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 SLC30A1Q9Y6M5 507 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 ESRRBO95718 433 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 CCNA2P20248 432 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 HOXC13P31276 330 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 HSPA7P48741 367 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 GTF2H3Q13889 308 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 PTGR1Q14914 329 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 LAPTM4AQ15012 233 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 NFE2Q16621 373 aaPredicted RBP12.5□□□□□ -0.41
LIG1-201ENST00000263274 CYBRD1Q53TN4 286 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 ITIH5Q86UX2 942 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 ZC3H15Q8WU90 426 aaKnown RBP12.5□□□□□ -0.41
LIG1-201ENST00000263274 SUSD3Q96L08 255 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 UHRF1Q96T88 793 aaPredicted RBP12.5□□□□□ -0.41
LIG1-201ENST00000263274 ZBTB18Q99592 522 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 LATS2Q9NRM7 1088 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 TRMT13Q9NUP7 481 aaKnown RBP12.5□□□□□ -0.41
LIG1-201ENST00000263274 SMPD4Q9NXE4 827 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 KLQ9UEF7 1012 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 RABL2BQ9UNT1 228 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 PKP3Q9Y446 797 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 SNX5Q9Y5X3 404 aa12.5□□□□□ -0.41
LIG1-201ENST00000263274 A0A0U1RQF3 1178 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 TMEM247A6NEH6 219 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 B4GALT3O60512 393 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 ALDH4A1P30038 563 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 NR1D2Q14995 579 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 MEP1AQ16819 746 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 PERM1Q5SV97 790 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 SPATA19Q7Z5L4 167 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 PIAS4Q8N2W9 510 aaPredicted RBP12.49□□□□□ -0.41
LIG1-201ENST00000263274 SFRP1Q8N474 314 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 TMEM199Q8N511 208 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 MFSD2AQ8NA29 543 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 ZBED2Q9BTP6 218 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 SEZ6LQ9BYH1 1024 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 TLR8Q9NR97 1041 aaKnown RBP12.49□□□□□ -0.41
LIG1-201ENST00000263274 AIG1Q9NVV5 245 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 ADGRE2Q9UHX3 823 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 A0A0G2JMZ2 1700 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 LRRC37A2A6NM11 1700 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 LOC285095A0A1B0GVY8 99 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 MYO1GB0I1T2 1018 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 TBC1D4O60343 1298 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 DFNA5O60443 496 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 MLYCDO95822 493 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 TACR2P21452 398 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 CD97P48960 835 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 CCNYL2Q5T2Q4 361 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 NKAPQ8N5F7 415 aaKnown RBP12.49□□□□□ -0.41
LIG1-201ENST00000263274 PACRGLQ8N7B6 248 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 ZNF555Q8NEP9 628 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 ITCHQ96J02 903 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 ZNF599Q96NL3 588 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 SLX1AQ9BQ83 275 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 TM6SF2Q9BZW4 377 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 COMMD8Q9NX08 183 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 ABCD2Q9UBJ2 740 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 AASSQ9UDR5 926 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 ZFP37Q9Y6Q3 630 aaPredicted RBP12.49□□□□□ -0.41
LIG1-201ENST00000263274 ACOX3O15254 700 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 VPS4BO75351 444 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 THRBP10828 461 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 CYP4B1P13584 511 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 MATN1P21941 496 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 HTR7P34969 479 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 ERVK-8P63133 956 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 TIAL1Q01085 375 aaKnown RBP eCLIP12.49□□□□□ -0.41
LIG1-201ENST00000263274 VAC14Q08AM6 782 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 VARS2Q5ST30 1063 aaKnown RBP12.49□□□□□ -0.41
LIG1-201ENST00000263274 SPRYD7Q5W111 196 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 GALNT5Q7Z7M9 940 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 ZNF598Q86UK7 904 aaKnown RBP12.49□□□□□ -0.41
LIG1-201ENST00000263274 PHYKPLQ8IUZ5 450 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 PHACTR4Q8IZ21 702 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 DTWD1Q8N5C7 304 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 CLDN19Q8N6F1 224 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 TMCO5AQ8N6Q1 288 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 SLC35B4Q969S0 331 aa12.49□□□□□ -0.41
LIG1-201ENST00000263274 C1orf74Q96LT6 269 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms