RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 GCOM2Q9BZD3 368 aaPredicted RBP3.25□□□□□ -1.89
VPS35-208ENST00000568612 TP63Q9H3D4 680 aaPredicted RBP3.25□□□□□ -1.89
VPS35-208ENST00000568612 XKR8Q9H6D3 395 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 TRIM45Q9H8W5 580 aaPredicted RBP3.25□□□□□ -1.89
VPS35-208ENST00000568612 TRPV4Q9HBA0 871 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 TM9SF3Q9HD45 589 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 IL1RAPL2Q9NP60 686 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 BLOC1S4Q9NUP1 217 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 NKIRAS2Q9NYR9 191 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 IGSF9Q9P2J2 1179 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 LRIT1Q9P2V4 623 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 STX18Q9P2W9 335 aaKnown RBP3.25□□□□□ -1.89
VPS35-208ENST00000568612 MTRRQ9UBK8 725 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 DNAJB4Q9UDY4 337 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 CD300AQ9UGN4 299 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 FAM153AQ9UHL3 310 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 RPS6KA6Q9UK32 745 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 POU2F3Q9UKI9 436 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 RCOR1Q9UKL0 485 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 AGO1Q9UL18 857 aaKnown RBP3.25□□□□□ -1.89
VPS35-208ENST00000568612 CDH7Q9ULB5 785 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 NFU1Q9UMS0 254 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 GAB2Q9UQC2 676 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 EIF3LQ9Y262 564 aaKnown RBP3.25□□□□□ -1.89
VPS35-208ENST00000568612 WBP11Q9Y2W2 641 aaKnown RBP3.25□□□□□ -1.89
VPS35-208ENST00000568612 DTNAQ9Y4J8 743 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 ABCA6Q8N139 1617 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 PTCH1Q13635 1447 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 ABCA8O94911 1581 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 ADAMTS12P58397 1594 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 CARMIL3Q8ND23 1372 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 MYH2Q9UKX2 1941 aa3.25□□□□□ -1.89
VPS35-208ENST00000568612 MAGI3Q5TCQ9 1506 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 ARHGEF40Q8TER5 1519 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 GPATCH8Q9UKJ3 1502 aaKnown RBP3.24□□□□□ -1.89
VPS35-208ENST00000568612 PCM1Q15154 2024 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 ABCA9Q8IUA7 1624 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 LOC100653049A0A140TA62 436 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 CCDC195A0A1B0GUA6 201 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 RAB19A4D1S5 217 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 MYADML2A6NDP7 307 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 HMX3A6NHT5 357 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 C2orf74A8MZ97 194 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 LINC00587B1AMM8 73 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 F8W036 122 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 H0YJX3 145 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 OVOL3O00110 214 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 MASP2O00187 686 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 NDUFS8O00217 210 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 POLRMTO00411 1230 aaKnown RBP3.24□□□□□ -1.89
VPS35-208ENST00000568612 TXNDC9O14530 226 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 TRAFD1O14545 582 aaPredicted RBP3.24□□□□□ -1.89
VPS35-208ENST00000568612 SNX3O60493 162 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 CTNND1O60716 968 aaKnown RBP3.24□□□□□ -1.89
VPS35-208ENST00000568612 TOM1O60784 492 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 VPS4BO75351 444 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 KRT34O76011 436 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 SEMA3DO95025 777 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 APOC1P02654 83 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 OPN1MWP04001 364 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 CALB1P05937 261 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 PGK2P07205 417 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 GJB1P08034 283 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 ANXA6P08133 673 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 OPN1MW2P0DN77 364 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 OPN1MW3P0DN78 364 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 TCP1P17987 556 aaKnown RBP3.24□□□□□ -1.89
VPS35-208ENST00000568612 ITGB6P18564 788 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 ATF3P18847 181 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 CDH2P19022 906 aaPredicted RBP3.24□□□□□ -1.89
VPS35-208ENST00000568612 TFEBP19484 476 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 ITIH1P19827 911 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 CHRM3P20309 590 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 TGM1P22735 817 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 F8A1P23610 371 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 PCSK6P29122 969 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 CIITAP33076 1130 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 CTNNB1P35222 781 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 STAT1P42224 750 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 OR3A3P47888 321 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 PIK3CGP48736 1102 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 HOXA1P49639 335 aaPredicted RBP3.24□□□□□ -1.89
VPS35-208ENST00000568612 CDK9P50750 372 aaKnown RBP3.24□□□□□ -1.89
VPS35-208ENST00000568612 NEK3P51956 506 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 POLGP54098 1239 aaPredicted RBP3.24□□□□□ -1.89
VPS35-208ENST00000568612 TPTEP56180 551 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 C21orf59P57076 290 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 NANOS3P60323 173 aaKnown RBP3.24□□□□□ -1.89
VPS35-208ENST00000568612 RAB4BP61018 213 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 RPS7P62081 194 aaKnown RBP3.24□□□□□ -1.89
VPS35-208ENST00000568612 YWHAEP62258 255 aaKnown RBP3.24□□□□□ -1.89
VPS35-208ENST00000568612 RPL10AP62906 217 aaKnown RBP3.24□□□□□ -1.89
VPS35-208ENST00000568612 PURAQ00577 322 aaKnown RBP3.24□□□□□ -1.89
VPS35-208ENST00000568612 MC2RQ01718 297 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 FOLH1Q04609 750 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 UBE3AQ05086 875 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 CD300CQ08708 224 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 SCAPQ12770 1279 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 BAMBIQ13145 260 aa3.24□□□□□ -1.89
VPS35-208ENST00000568612 SELENBP1Q13228 472 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms