RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 C6orf15Q6UXA7 325 aaPredicted RBP11.15□□□□□ -0.62
VPS28-214ENST00000531032 MFSD7Q6UXD7 560 aa11.15□□□□□ -0.62
VPS28-214ENST00000531032 B4GALNT4Q76KP1 1039 aa11.15□□□□□ -0.62
VPS28-214ENST00000531032 RFX6Q8HWS3 928 aa11.15□□□□□ -0.62
VPS28-214ENST00000531032 TRAPPC5Q8IUR0 188 aa11.15□□□□□ -0.62
VPS28-214ENST00000531032 KLHL6Q8WZ60 621 aa11.15□□□□□ -0.62
VPS28-214ENST00000531032 RNF25Q96BH1 459 aaPredicted RBP11.15□□□□□ -0.62
VPS28-214ENST00000531032 ZDHHC12Q96GR4 267 aa11.15□□□□□ -0.62
VPS28-214ENST00000531032 ABHD17AQ96GS6 310 aa11.15□□□□□ -0.62
VPS28-214ENST00000531032 TEKT5Q96M29 485 aa11.15□□□□□ -0.62
VPS28-214ENST00000531032 OR6C1Q96RD1 312 aa11.15□□□□□ -0.62
VPS28-214ENST00000531032 RAB33BQ9H082 229 aa11.15□□□□□ -0.62
VPS28-214ENST00000531032 TRABDQ9H4I3 376 aa11.15□□□□□ -0.62
VPS28-214ENST00000531032 ZNF71Q9NQZ8 489 aaPredicted RBP11.15□□□□□ -0.62
VPS28-214ENST00000531032 DDX56Q9NY93 547 aaKnown RBP11.15□□□□□ -0.62
VPS28-214ENST00000531032 FAM153AQ9UHL3 310 aa11.15□□□□□ -0.62
VPS28-214ENST00000531032 WDR37Q9Y2I8 494 aa11.15□□□□□ -0.62
VPS28-214ENST00000531032 KCTD3Q9Y597 815 aa11.15□□□□□ -0.62
VPS28-214ENST00000531032 MRPS18BQ9Y676 258 aaKnown RBP11.15□□□□□ -0.62
VPS28-214ENST00000531032 NAV2Q8IVL1 2488 aa11.15□□□□□ -0.62
VPS28-214ENST00000531032 KIF1CO43896 1103 aaKnown RBP11.14□□□□□ -0.63
VPS28-214ENST00000531032 KCNJ13O60928 360 aa11.14□□□□□ -0.63
VPS28-214ENST00000531032 RASSF9O75901 435 aa11.14□□□□□ -0.63
VPS28-214ENST00000531032 NDUFA10O95299 355 aa11.14□□□□□ -0.63
VPS28-214ENST00000531032 EPOP01588 193 aa11.14□□□□□ -0.63
VPS28-214ENST00000531032 DLSTP36957 453 aa11.14□□□□□ -0.63
VPS28-214ENST00000531032 CDKN2BP42772 138 aa11.14□□□□□ -0.63
VPS28-214ENST00000531032 NR2C2P49116 596 aa11.14□□□□□ -0.63
VPS28-214ENST00000531032 WNT3AP56704 352 aa11.14□□□□□ -0.63
VPS28-214ENST00000531032 FOXK1P85037 733 aa11.14□□□□□ -0.63
VPS28-214ENST00000531032 DMPKQ09013 629 aa11.14□□□□□ -0.63
VPS28-214ENST00000531032 WASHC5Q12768 1159 aa11.14□□□□□ -0.63
VPS28-214ENST00000531032 TMEM115Q12893 351 aaPredicted RBP11.14□□□□□ -0.63
VPS28-214ENST00000531032 GTF2H3Q13889 308 aa11.14□□□□□ -0.63
VPS28-214ENST00000531032 SEPT6Q14141 434 aa11.14□□□□□ -0.63
VPS28-214ENST00000531032 TCEAL1Q15170 157 aa11.14□□□□□ -0.63
VPS28-214ENST00000531032 TAZQ16635 292 aa11.14□□□□□ -0.63
VPS28-214ENST00000531032 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.14□□□□□ -0.63
VPS28-214ENST00000531032 COLEC12Q5KU26 742 aa11.14□□□□□ -0.63
VPS28-214ENST00000531032 ZDHHC20Q5W0Z9 365 aa11.14□□□□□ -0.63
VPS28-214ENST00000531032 C16orf46Q6P387 395 aa11.14□□□□□ -0.63
VPS28-214ENST00000531032 KDELC1Q6UW63 502 aa11.14□□□□□ -0.63
VPS28-214ENST00000531032 BZW1Q7L1Q6 419 aaKnown RBP11.14□□□□□ -0.63
VPS28-214ENST00000531032 RHOT1Q8IXI2 618 aa11.14□□□□□ -0.63
VPS28-214ENST00000531032 TTC30BQ8N4P2 665 aa11.14□□□□□ -0.63
VPS28-214ENST00000531032 GALNT6Q8NCL4 622 aa11.14□□□□□ -0.63
VPS28-214ENST00000531032 BRSK1Q8TDC3 778 aa11.14□□□□□ -0.63
VPS28-214ENST00000531032 TFB1MQ8WVM0 346 aaKnown RBP11.14□□□□□ -0.63
VPS28-214ENST00000531032 CXorf40BQ96DE9 158 aa11.14□□□□□ -0.63
VPS28-214ENST00000531032 STAMBPL1Q96FJ0 436 aa11.14□□□□□ -0.63
VPS28-214ENST00000531032 CHP1Q99653 195 aa11.14□□□□□ -0.63
VPS28-214ENST00000531032 ANP32EQ9BTT0 268 aa11.14□□□□□ -0.63
VPS28-214ENST00000531032 NHEJ1Q9H9Q4 299 aaPredicted RBP11.14□□□□□ -0.63
VPS28-214ENST00000531032 BPIFA1Q9NP55 256 aa11.14□□□□□ -0.63
VPS28-214ENST00000531032 IL26Q9NPH9 171 aa11.14□□□□□ -0.63
VPS28-214ENST00000531032 ABHD10Q9NUJ1 306 aa11.14□□□□□ -0.63
VPS28-214ENST00000531032 SPTLC3Q9NUV7 552 aa11.14□□□□□ -0.63
VPS28-214ENST00000531032 UBP1Q9NZI7 540 aa11.14□□□□□ -0.63
VPS28-214ENST00000531032 SEMA5BQ9P283 1151 aa11.14□□□□□ -0.63
VPS28-214ENST00000531032 CROTQ9UKG9 612 aa11.14□□□□□ -0.63
VPS28-214ENST00000531032 KCNMB2Q9Y691 235 aa11.14□□□□□ -0.63
VPS28-214ENST00000531032 SPENQ96T58 3664 aaKnown RBP11.13□□□□□ -0.63
VPS28-214ENST00000531032 MTSS1O43312 755 aa11.13□□□□□ -0.63
VPS28-214ENST00000531032 SPAG6O75602 509 aa11.13□□□□□ -0.63
VPS28-214ENST00000531032 KIAA0754O94854 1291 aa11.13□□□□□ -0.63
VPS28-214ENST00000531032 PECAM1P16284 738 aaPredicted RBP11.13□□□□□ -0.63
VPS28-214ENST00000531032 NELFEP18615 380 aaKnown RBP11.13□□□□□ -0.63
VPS28-214ENST00000531032 COMTP21964 271 aa11.13□□□□□ -0.63
VPS28-214ENST00000531032 FECHP22830 423 aa11.13□□□□□ -0.63
VPS28-214ENST00000531032 SPAM1P38567 509 aa11.13□□□□□ -0.63
VPS28-214ENST00000531032 HALP42357 657 aa11.13□□□□□ -0.63
VPS28-214ENST00000531032 SRSF1Q07955 248 aaKnown RBP eCLIP11.13□□□□□ -0.63
VPS28-214ENST00000531032 TFDP2Q14188 446 aa11.13□□□□□ -0.63
VPS28-214ENST00000531032 NOMO1Q15155 1222 aa11.13□□□□□ -0.63
VPS28-214ENST00000531032 LACTB2Q53H82 288 aaPredicted RBP11.13□□□□□ -0.63
VPS28-214ENST00000531032 ODF2Q5BJF6 829 aa11.13□□□□□ -0.63
VPS28-214ENST00000531032 SIRPB2Q5JXA9 342 aa11.13□□□□□ -0.63
VPS28-214ENST00000531032 CACHD1Q5VU97 1274 aa11.13□□□□□ -0.63
VPS28-214ENST00000531032 IRGCQ6NXR0 463 aa11.13□□□□□ -0.63
VPS28-214ENST00000531032 CYB5D1Q6P9G0 228 aa11.13□□□□□ -0.63
VPS28-214ENST00000531032 FAM92BQ6ZTR7 304 aa11.13□□□□□ -0.63
VPS28-214ENST00000531032 PPP1R3BQ86XI6 285 aa11.13□□□□□ -0.63
VPS28-214ENST00000531032 RASGRP3Q8IV61 690 aa11.13□□□□□ -0.63
VPS28-214ENST00000531032 DDHD1Q8NEL9 900 aa11.13□□□□□ -0.63
VPS28-214ENST00000531032 GDAP1Q8TB36 358 aa11.13□□□□□ -0.63
VPS28-214ENST00000531032 SLC41A2Q96JW4 573 aa11.13□□□□□ -0.63
VPS28-214ENST00000531032 CCDC42Q96M95 316 aa11.13□□□□□ -0.63
VPS28-214ENST00000531032 TTC25Q96NG3 672 aa11.13□□□□□ -0.63
VPS28-214ENST00000531032 ZCCHC2Q9C0B9 1178 aaKnown RBP11.13□□□□□ -0.63
VPS28-214ENST00000531032 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.13□□□□□ -0.63
VPS28-214ENST00000531032 HACD3Q9P035 362 aa11.13□□□□□ -0.63
VPS28-214ENST00000531032 IL17CQ9P0M4 197 aa11.13□□□□□ -0.63
VPS28-214ENST00000531032 SAE1Q9UBE0 346 aaPredicted RBP11.13□□□□□ -0.63
VPS28-214ENST00000531032 TRIM10Q9UDY6 481 aa11.13□□□□□ -0.63
VPS28-214ENST00000531032 KCND3Q9UK17 655 aa11.13□□□□□ -0.63
VPS28-214ENST00000531032 INTUQ9ULD6 942 aa11.13□□□□□ -0.63
VPS28-214ENST00000531032 HYOU1Q9Y4L1 999 aa11.13□□□□□ -0.63
VPS28-214ENST00000531032 PCDHB3Q9Y5E6 796 aa11.13□□□□□ -0.63
VPS28-214ENST00000531032 PCDHGA6Q9Y5G7 932 aa11.13□□□□□ -0.63
VPS28-214ENST00000531032 IGHV5-51A0A0C4DH38 117 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms