RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 OR2AG2A6NM03 316 aa15.56■□□□□ 0.08
USP40-206ENST00000443711 PATE3B3GLJ2 98 aa15.56■□□□□ 0.08
USP40-206ENST00000443711 DFNA5O60443 496 aa15.56■□□□□ 0.08
USP40-206ENST00000443711 FUCA1P04066 466 aa15.56■□□□□ 0.08
USP40-206ENST00000443711 CSF2P04141 144 aa15.56■□□□□ 0.08
USP40-206ENST00000443711 SYPP08247 313 aa15.56■□□□□ 0.08
USP40-206ENST00000443711 PKMP14618 531 aaKnown RBP15.56■□□□□ 0.08
USP40-206ENST00000443711 GABRB3P28472 473 aa15.56■□□□□ 0.08
USP40-206ENST00000443711 GP5P40197 560 aa15.56■□□□□ 0.08
USP40-206ENST00000443711 GNPDA1P46926 289 aa15.56■□□□□ 0.08
USP40-206ENST00000443711 HK3P52790 923 aa15.56■□□□□ 0.08
USP40-206ENST00000443711 CTSCP53634 463 aa15.56■□□□□ 0.08
USP40-206ENST00000443711 BNC1Q01954 994 aa15.56■□□□□ 0.08
USP40-206ENST00000443711 EFTUD2Q15029 972 aaKnown RBP eCLIP15.56■□□□□ 0.08
USP40-206ENST00000443711 BCL7AQ4VC05 210 aa15.56■□□□□ 0.08
USP40-206ENST00000443711 PYCR3Q53H96 274 aa15.56■□□□□ 0.08
USP40-206ENST00000443711 GRTP1Q5TC63 336 aa15.56■□□□□ 0.08
USP40-206ENST00000443711 IL27RAQ6UWB1 636 aa15.56■□□□□ 0.08
USP40-206ENST00000443711 PHACTR4Q8IZ21 702 aa15.56■□□□□ 0.08
USP40-206ENST00000443711 PDXPQ96GD0 296 aa15.56■□□□□ 0.08
USP40-206ENST00000443711 BIRC8Q96P09 236 aa15.56■□□□□ 0.08
USP40-206ENST00000443711 OR2M4Q96R27 311 aa15.56■□□□□ 0.08
USP40-206ENST00000443711 TSSK1BQ9BXA7 367 aa15.56■□□□□ 0.08
USP40-206ENST00000443711 SLC13A1Q9BZW2 595 aa15.56■□□□□ 0.08
USP40-206ENST00000443711 DNAJC28Q9NX36 388 aa15.56■□□□□ 0.08
USP40-206ENST00000443711 NCDNQ9UBB6 729 aa15.56■□□□□ 0.08
USP40-206ENST00000443711 GPSM3Q9Y4H4 160 aa15.56■□□□□ 0.08
USP40-206ENST00000443711 IKBKGQ9Y6K9 419 aa15.56■□□□□ 0.08
USP40-206ENST00000443711 PRSS21Q9Y6M0 314 aa15.56■□□□□ 0.08
USP40-206ENST00000443711 TMEM131Q92545 1883 aa15.56■□□□□ 0.08
USP40-206ENST00000443711 KLHL33A6NCF5 533 aa15.55■□□□□ 0.08
USP40-206ENST00000443711 POC1B-GALNT4F8VUJ3 575 aa15.55■□□□□ 0.08
USP40-206ENST00000443711 H3BM21 787 aa15.55■□□□□ 0.08
USP40-206ENST00000443711 ARHGAP33O14559 1287 aa15.55■□□□□ 0.08
USP40-206ENST00000443711 SGTAO43765 313 aa15.55■□□□□ 0.08
USP40-206ENST00000443711 FTH1P02794 183 aa15.55■□□□□ 0.08
USP40-206ENST00000443711 F7P08709 466 aaPredicted RBP15.55■□□□□ 0.08
USP40-206ENST00000443711 GSTM1P09488 218 aa15.55■□□□□ 0.08
USP40-206ENST00000443711 NME1P15531 152 aaKnown RBP15.55■□□□□ 0.08
USP40-206ENST00000443711 JUNDP17535 347 aa15.55■□□□□ 0.08
USP40-206ENST00000443711 SPRP35270 261 aaPredicted RBP15.55■□□□□ 0.08
USP40-206ENST00000443711 MSH2P43246 934 aa15.55■□□□□ 0.08
USP40-206ENST00000443711 ARRB1P49407 418 aaPredicted RBP15.55■□□□□ 0.08
USP40-206ENST00000443711 PRLHRP49683 370 aa15.55■□□□□ 0.08
USP40-206ENST00000443711 IRX4P78413 519 aa15.55■□□□□ 0.08
USP40-206ENST00000443711 GSTM4Q03013 218 aa15.55■□□□□ 0.08
USP40-206ENST00000443711 GRIK2Q13002 908 aa15.55■□□□□ 0.08
USP40-206ENST00000443711 CCDC6Q16204 474 aa15.55■□□□□ 0.08
USP40-206ENST00000443711 ZNF423Q2M1K9 1284 aa15.55■□□□□ 0.08
USP40-206ENST00000443711 ZNF542PQ5EBM4 170 aa15.55■□□□□ 0.08
USP40-206ENST00000443711 BEND6Q5SZJ8 279 aaPredicted RBP15.55■□□□□ 0.08
USP40-206ENST00000443711 KCTD16Q68DU8 428 aa15.55■□□□□ 0.08
USP40-206ENST00000443711 CRTC3Q6UUV7 619 aa15.55■□□□□ 0.08
USP40-206ENST00000443711 ZC3HC1Q86WB0 502 aaKnown RBP15.55■□□□□ 0.08
USP40-206ENST00000443711 SLC44A1Q8WWI5 657 aa15.55■□□□□ 0.08
USP40-206ENST00000443711 MRRFQ96E11 262 aaKnown RBP15.55■□□□□ 0.08
USP40-206ENST00000443711 PANX3Q96QZ0 392 aa15.55■□□□□ 0.08
USP40-206ENST00000443711 ELF4Q99607 663 aaPredicted RBP15.55■□□□□ 0.08
USP40-206ENST00000443711 RBBP8Q99708 897 aa15.55■□□□□ 0.08
USP40-206ENST00000443711 CCM2Q9BSQ5 444 aa15.55■□□□□ 0.08
USP40-206ENST00000443711 RHOJQ9H4E5 214 aa15.55■□□□□ 0.08
USP40-206ENST00000443711 TRNAU1APQ9NX07 287 aaKnown RBP15.55■□□□□ 0.08
USP40-206ENST00000443711 FETUBQ9UGM5 382 aa15.55■□□□□ 0.08
USP40-206ENST00000443711 PNMA8BQ9ULN7 279 aaPredicted RBP15.55■□□□□ 0.08
USP40-206ENST00000443711 PRKAB1Q9Y478 270 aa15.55■□□□□ 0.08
USP40-206ENST00000443711 GPR179Q6PRD1 2367 aa15.55■□□□□ 0.08
USP40-206ENST00000443711 UQCRHLA0A096LP55 91 aa15.54■□□□□ 0.08
USP40-206ENST00000443711 PROB1E7EW31 1015 aa15.54■□□□□ 0.08
USP40-206ENST00000443711 KCNJ13O60928 360 aa15.54■□□□□ 0.08
USP40-206ENST00000443711 LRP3O75074 770 aa15.54■□□□□ 0.08
USP40-206ENST00000443711 POP7O75817 140 aaKnown RBP15.54■□□□□ 0.08
USP40-206ENST00000443711 UQCRHP07919 91 aa15.54■□□□□ 0.08
USP40-206ENST00000443711 INHBAP08476 426 aa15.54■□□□□ 0.08
USP40-206ENST00000443711 NUDT17P0C025 328 aa15.54■□□□□ 0.08
USP40-206ENST00000443711 ZNF806P0C7X5 589 aa15.54■□□□□ 0.08
USP40-206ENST00000443711 CTSEP14091 401 aa15.54■□□□□ 0.08
USP40-206ENST00000443711 RXRGP48443 463 aa15.54■□□□□ 0.08
USP40-206ENST00000443711 HNRNPKP61978 463 aaKnown RBP eCLIP15.54■□□□□ 0.08
USP40-206ENST00000443711 HLA-BQ31612 363 aa15.54■□□□□ 0.08
USP40-206ENST00000443711 CTSL3PQ5NE16 218 aa15.54■□□□□ 0.08
USP40-206ENST00000443711 PRAMEF14Q5SWL7 426 aa15.54■□□□□ 0.08
USP40-206ENST00000443711 ZNF549Q6P9A3 640 aa15.54■□□□□ 0.08
USP40-206ENST00000443711 CHST15Q7LFX5 561 aaPredicted RBP15.54■□□□□ 0.08
USP40-206ENST00000443711 ZNF547Q8IVP9 402 aa15.54■□□□□ 0.08
USP40-206ENST00000443711 NAT14Q8WUY8 206 aa15.54■□□□□ 0.08
USP40-206ENST00000443711 LINC00615Q96LM1 132 aaPredicted RBP15.54■□□□□ 0.08
USP40-206ENST00000443711 PAFAH2Q99487 392 aa15.54■□□□□ 0.08
USP40-206ENST00000443711 TIMM29Q9BSF4 260 aa15.54■□□□□ 0.08
USP40-206ENST00000443711 MCMBPQ9BTE3 642 aa15.54■□□□□ 0.08
USP40-206ENST00000443711 AARSD1Q9BTE6 412 aaKnown RBP15.54■□□□□ 0.08
USP40-206ENST00000443711 SMOC1Q9H4F8 434 aa15.54■□□□□ 0.08
USP40-206ENST00000443711 PPCSQ9HAB8 311 aa15.54■□□□□ 0.08
USP40-206ENST00000443711 APOBEC3BQ9UH17 382 aaKnown RBP15.54■□□□□ 0.08
USP40-206ENST00000443711 KLF15Q9UIH9 416 aa15.54■□□□□ 0.08
USP40-206ENST00000443711 ZFC3H1O60293 1989 aaKnown RBP15.54■□□□□ 0.08
USP40-206ENST00000443711 PCDH15Q96QU1 1955 aa15.54■□□□□ 0.08
USP40-206ENST00000443711 BPTFQ12830 3046 aa15.53■□□□□ 0.08
USP40-206ENST00000443711 C17orf113A0A1B0GUU1 675 aa15.53■□□□□ 0.08
USP40-206ENST00000443711 MGAT4DA6NG13 374 aa15.53■□□□□ 0.08
USP40-206ENST00000443711 SCAMP1O15126 338 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms