RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 POLR2JP52435 117 aaKnown RBP7.43□□□□□ -1.22
LIMA1-213ENST00000552720 ADARP55265 1226 aaKnown RBP7.43□□□□□ -1.22
LIMA1-213ENST00000552720 MTPNP58546 118 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 RPS24P62847 133 aaKnown RBP7.43□□□□□ -1.22
LIMA1-213ENST00000552720 TUBA4AP68366 448 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 RAD51Q06609 339 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 DCTN2Q13561 401 aaKnown RBP7.43□□□□□ -1.22
LIMA1-213ENST00000552720 PARP15Q460N3 678 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 ANKDD1AQ495B1 522 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 CTXN3Q4LDR2 81 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 CYBRD1Q53TN4 286 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 OTUD3Q5T2D3 398 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-213ENST00000552720 TMEM214Q6NUQ4 689 aaKnown RBP7.43□□□□□ -1.22
LIMA1-213ENST00000552720 PRMT9Q6P2P2 845 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 GLT6D1Q7Z4J2 308 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 SPRED1Q7Z699 444 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 EFHBQ8N7U6 833 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 PROKR1Q8TCW9 393 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 LINC01599Q8WXQ3 324 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 FATE1Q969F0 183 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 ABTB1Q969K4 478 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-213ENST00000552720 TBRG4Q969Z0 631 aaKnown RBP eCLIP7.43□□□□□ -1.22
LIMA1-213ENST00000552720 C8orf48Q96LL4 319 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 PPM1MQ96MI6 270 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 UROC1Q96N76 676 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 NLE1Q9NVX2 485 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-213ENST00000552720 IRAK4Q9NWZ3 460 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 TAS2R13Q9NYV9 303 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 THEGQ9P2T0 379 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 GABRQQ9UN88 632 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 PCDHB5Q9Y5E4 795 aa7.43□□□□□ -1.22
LIMA1-213ENST00000552720 SCAMP3O14828 347 aaKnown RBP7.42□□□□□ -1.22
LIMA1-213ENST00000552720 SNX2O60749 519 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 NDUFS3O75489 264 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 SLC22A3O75751 556 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 RSL1D1O76021 490 aaKnown RBP7.42□□□□□ -1.22
LIMA1-213ENST00000552720 RASAL1O95294 804 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 VNN2O95498 520 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 ESRRBO95718 433 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 CYBAP13498 195 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 PRKAR2AP13861 404 aaKnown RBP7.42□□□□□ -1.22
LIMA1-213ENST00000552720 TCF3P15923 654 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 ELK4P28324 431 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 POLR2IP36954 125 aaKnown RBP7.42□□□□□ -1.22
LIMA1-213ENST00000552720 DGKQP52824 942 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 TMED1Q13445 227 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 KCNA10Q16322 511 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 KCTD21Q4G0X4 260 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 XKR7Q5GH72 579 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 CTSL3PQ5NE16 218 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 C6orf136Q5SQH8 315 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 FAM171A1Q5VUB5 890 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 IRAK1BP1Q5VVH5 260 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 GPR107Q5VW38 600 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 CST9Q5W186 159 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 LETMD1Q6P1Q0 360 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 DUS1LQ6P1R4 473 aaKnown RBP7.42□□□□□ -1.22
LIMA1-213ENST00000552720 KLHL35Q6PF15 583 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 Q6ZSR9 355 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 LYSMD3Q7Z3D4 306 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 GPR180Q86V85 440 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 COLGALT2Q8IYK4 626 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 TMEM199Q8N511 208 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 FNDC5Q8NAU1 212 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 LPCAT1Q8NF37 534 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 BIRC7Q96CA5 298 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 LINGO1Q96FE5 620 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 RNF145Q96MT1 663 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 C9orf16Q9BUW7 83 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 TRIM54Q9BYV2 358 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 GPR62Q9BZJ7 368 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 TRIM15Q9C019 465 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 CCDC68Q9H2F9 335 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 POPDC3Q9HBV1 291 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 SYTL2Q9HCH5 934 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 LMCD1Q9NZU5 365 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 ZFP37Q9Y6Q3 630 aaPredicted RBP7.42□□□□□ -1.22
LIMA1-213ENST00000552720 A0A087WXM4 84 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 TRIM64CA6NLI5 447 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 H0Y858 1186 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 E2F3O00716 465 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 SYNCRIPO60506 623 aaKnown RBP7.42□□□□□ -1.22
LIMA1-213ENST00000552720 TLR5O60602 858 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 PFDN1O60925 122 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 KATNA1O75449 491 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 EEDO75530 441 aaKnown RBP7.42□□□□□ -1.22
LIMA1-213ENST00000552720 IGLV3-27P01718 113 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 MC4RP32245 332 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 RPS9P46781 194 aaKnown RBP7.42□□□□□ -1.22
LIMA1-213ENST00000552720 GATMP50440 423 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 HUNKP57058 714 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 ERVPABLB-1P60509 514 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 DSC1Q08554 894 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 PPP1R8Q12972 351 aaKnown RBP7.42□□□□□ -1.22
LIMA1-213ENST00000552720 MBTPS1Q14703 1052 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 RAB39AQ14964 217 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 NEDD8Q15843 81 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 NFE2Q16621 373 aaPredicted RBP7.42□□□□□ -1.22
LIMA1-213ENST00000552720 ZBED5Q49AG3 693 aa7.42□□□□□ -1.22
LIMA1-213ENST00000552720 ANKRD34AQ69YU3 496 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms