RNA–Protein interactions for RNA: ENST00000393077.2

VTI1A-201, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VTI1A, Length 4,131 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-201ENST00000393077 F8W036 122 aa7.57□□□□□ -1.2
VTI1A-201ENST00000393077 BCKDKO14874 412 aa7.57□□□□□ -1.2
VTI1A-201ENST00000393077 PRAMEF10O60809 474 aa7.57□□□□□ -1.2
VTI1A-201ENST00000393077 SLC22A5O76082 557 aa7.57□□□□□ -1.2
VTI1A-201ENST00000393077 PRG2P13727 222 aa7.57□□□□□ -1.2
VTI1A-201ENST00000393077 CYP2C18P33260 490 aa7.57□□□□□ -1.2
VTI1A-201ENST00000393077 CDO1Q16878 200 aa7.57□□□□□ -1.2
VTI1A-201ENST00000393077 TMEM119Q4V9L6 283 aa7.57□□□□□ -1.2
VTI1A-201ENST00000393077 MSS51Q4VC12 460 aa7.57□□□□□ -1.2
VTI1A-201ENST00000393077 ARHGAP17Q68EM7 881 aa7.57□□□□□ -1.2
VTI1A-201ENST00000393077 SYVN1Q86TM6 617 aa7.57□□□□□ -1.2
VTI1A-201ENST00000393077 RTL3Q8N8U3 475 aaKnown RBP7.57□□□□□ -1.2
VTI1A-201ENST00000393077 ZNF668Q96K58 619 aaPredicted RBP7.57□□□□□ -1.2
VTI1A-201ENST00000393077 PITHD1Q9GZP4 211 aaPredicted RBP7.57□□□□□ -1.2
VTI1A-201ENST00000393077 RANBP3Q9H6Z4 567 aaPredicted RBP7.57□□□□□ -1.2
VTI1A-201ENST00000393077 SP110Q9HB58 689 aa7.57□□□□□ -1.2
VTI1A-201ENST00000393077 ACSS2Q9NR19 701 aa7.57□□□□□ -1.2
VTI1A-201ENST00000393077 CHRAC1Q9NRG0 131 aa7.57□□□□□ -1.2
VTI1A-201ENST00000393077 ASNSD1Q9NWL6 643 aa7.57□□□□□ -1.2
VTI1A-201ENST00000393077 PITPNM1O00562 1244 aa7.57□□□□□ -1.2
VTI1A-201ENST00000393077 NRP1O14786 923 aa7.57□□□□□ -1.2
VTI1A-201ENST00000393077 BET1O15155 118 aa7.57□□□□□ -1.2
VTI1A-201ENST00000393077 EIF3DO15371 548 aaKnown RBP eCLIP7.57□□□□□ -1.2
VTI1A-201ENST00000393077 SNNO75324 88 aaPredicted RBP7.57□□□□□ -1.2
VTI1A-201ENST00000393077 LRIG2O94898 1065 aa7.57□□□□□ -1.2
VTI1A-201ENST00000393077 FGRP09769 529 aa7.57□□□□□ -1.2
VTI1A-201ENST00000393077 RAB3BP20337 219 aa7.57□□□□□ -1.2
VTI1A-201ENST00000393077 CTSKP43235 329 aa7.57□□□□□ -1.2
VTI1A-201ENST00000393077 RPP38P78345 283 aaKnown RBP7.57□□□□□ -1.2
VTI1A-201ENST00000393077 GAD2Q05329 585 aa7.57□□□□□ -1.2
VTI1A-201ENST00000393077 SIM2Q14190 667 aaPredicted RBP7.57□□□□□ -1.2
VTI1A-201ENST00000393077 DENND1BQ6P3S1 775 aa7.57□□□□□ -1.2
VTI1A-201ENST00000393077 GDPD3Q7L5L3 318 aa7.57□□□□□ -1.2
VTI1A-201ENST00000393077 DPP9Q86TI2 863 aa7.57□□□□□ -1.2
VTI1A-201ENST00000393077 UBQLNLQ8IYU4 475 aa7.57□□□□□ -1.2
VTI1A-201ENST00000393077 DHX38Q92620 1227 aaKnown RBP7.57□□□□□ -1.2
VTI1A-201ENST00000393077 TRIM43Q96BQ3 446 aaPredicted RBP7.57□□□□□ -1.2
VTI1A-201ENST00000393077 ZSWIM3Q96MP5 696 aa7.57□□□□□ -1.2
VTI1A-201ENST00000393077 SLC9A7Q96T83 725 aa7.57□□□□□ -1.2
VTI1A-201ENST00000393077 PFDN5Q99471 154 aa7.57□□□□□ -1.2
VTI1A-201ENST00000393077 TMEM181Q9P2C4 612 aa7.57□□□□□ -1.2
VTI1A-201ENST00000393077 LIMD1Q9UGP4 676 aa7.57□□□□□ -1.2
VTI1A-201ENST00000393077 COPS3Q9UNS2 423 aa7.57□□□□□ -1.2
VTI1A-201ENST00000393077 RUVBL2Q9Y230 463 aaKnown RBP7.57□□□□□ -1.2
VTI1A-201ENST00000393077 NOSIPQ9Y314 301 aaKnown RBP7.57□□□□□ -1.2
VTI1A-201ENST00000393077 TMX2Q9Y320 296 aa7.57□□□□□ -1.2
VTI1A-201ENST00000393077 ACTL7AQ9Y615 435 aa7.57□□□□□ -1.2
VTI1A-201ENST00000393077 KCNK2O95069 426 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 CST1P01037 141 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 POU2F1P14859 743 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 HNMTP50135 292 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 TGFB2P61812 414 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 DEFA6Q01524 100 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 ABRQ12979 859 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 ADAM15Q13444 863 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 NPY5RQ15761 445 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 RFX4Q33E94 735 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 ATP13A5Q4VNC0 1218 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 MBLAC2Q68D91 279 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 SWSAP1Q6NVH7 229 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 HAGHLQ6PII5 290 aaPredicted RBP7.56□□□□□ -1.2
VTI1A-201ENST00000393077 AFTPHQ6ULP2 937 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 CDKL3Q8IVW4 592 aaPredicted RBP7.56□□□□□ -1.2
VTI1A-201ENST00000393077 ADHFE1Q8IWW8 467 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 LNX2Q8N448 690 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 RYBPQ8N488 228 aaPredicted RBP7.56□□□□□ -1.2
VTI1A-201ENST00000393077 ZFAND1Q8TCF1 268 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 SLC7A6Q92536 515 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 LPAR1Q92633 364 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 ZNF669Q96BR6 464 aaPredicted RBP7.56□□□□□ -1.2
VTI1A-201ENST00000393077 CCDC126Q96EE4 140 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 SLC45A3Q96JT2 553 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 ZNF578Q96N58 590 aaPredicted RBP7.56□□□□□ -1.2
VTI1A-201ENST00000393077 ERMAPQ96PL5 475 aaPredicted RBP7.56□□□□□ -1.2
VTI1A-201ENST00000393077 HOPXQ9BPY8 73 aaPredicted RBP7.56□□□□□ -1.2
VTI1A-201ENST00000393077 HDHD5Q9BXW7 423 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 GLIS2Q9BZE0 524 aaPredicted RBP7.56□□□□□ -1.2
VTI1A-201ENST00000393077 ACAD9Q9H845 621 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 CD93Q9NPY3 652 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 NIT2Q9NQR4 276 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 PAK6Q9NQU5 681 aaPredicted RBP7.56□□□□□ -1.2
VTI1A-201ENST00000393077 CCM2LQ9NUG4 571 aaPredicted RBP7.56□□□□□ -1.2
VTI1A-201ENST00000393077 UFSP2Q9NUQ7 469 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 SETD4Q9NVD3 440 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 EVA1BQ9NVM1 165 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 CPNE7Q9UBL6 633 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 PCDHB3Q9Y5E6 796 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 COL1A1P02452 1464 aaPredicted RBP7.56□□□□□ -1.2
VTI1A-201ENST00000393077 SLC16A4O15374 487 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 SSNA1O43805 119 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 KPNA6O60684 536 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 CYP4B1P13584 511 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 ICAM2P13598 275 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 FMO3P31513 532 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 PIK3CGP48736 1102 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 CSTF1Q05048 431 aaKnown RBP7.56□□□□□ -1.2
VTI1A-201ENST00000393077 CAPRIN1Q14444 709 aaKnown RBP7.56□□□□□ -1.2
VTI1A-201ENST00000393077 SPDYE2Q495Y8 402 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 ANKRD54Q6NXT1 300 aa7.56□□□□□ -1.2
VTI1A-201ENST00000393077 BEND4Q6ZU67 534 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms