RNA–Protein interactions for RNA: ENST00000635970.1

CLN8-209, Transcript of CLN8, transmembrane ER and ERGIC protein, humanhuman

TSL 5

Gene CLN8, Length 1,958 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN8-209ENST00000635970 NBPF6Q5VWK0 638 aa20.3■□□□□ 0.84
CLN8-209ENST00000635970 NBPF4Q96M43 638 aa20.3■□□□□ 0.84
CLN8-209ENST00000635970 IPO9Q96P70 1041 aaKnown RBP20.3■□□□□ 0.84
CLN8-209ENST00000635970 SEPT12Q8IYM1 358 aa20.29■□□□□ 0.84
CLN8-209ENST00000635970 COL3A1P02461 1466 aaPredicted RBP20.29■□□□□ 0.84
CLN8-209ENST00000635970 RGPD1P0DJD0 1748 aa20.29■□□□□ 0.84
CLN8-209ENST00000635970 BARGINQ6ZT62 677 aa20.28■□□□□ 0.84
CLN8-209ENST00000635970 THRAP3Q9Y2W1 955 aaKnown RBP20.28■□□□□ 0.84
CLN8-209ENST00000635970 DISP2A7MBM2 1401 aa20.28■□□□□ 0.84
CLN8-209ENST00000635970 ONECUT3O60422 494 aaPredicted RBP20.28■□□□□ 0.84
CLN8-209ENST00000635970 DEKP35659 375 aaKnown RBP20.28■□□□□ 0.84
CLN8-209ENST00000635970 RALBP1Q15311 655 aa20.28■□□□□ 0.84
CLN8-209ENST00000635970 MEGF6O75095 1541 aa20.25■□□□□ 0.83
CLN8-209ENST00000635970 EYA1Q99502 592 aa20.25■□□□□ 0.83
CLN8-209ENST00000635970 NCAPD2Q15021 1401 aa20.24■□□□□ 0.83
CLN8-209ENST00000635970 SHANK3Q9BYB0 1731 aa20.24■□□□□ 0.83
CLN8-209ENST00000635970 MYBBP1AQ9BQG0 1328 aaKnown RBP20.23■□□□□ 0.83
CLN8-209ENST00000635970 IL13P35225 146 aa20.23■□□□□ 0.83
CLN8-209ENST00000635970 IGSF1Q8N6C5 1336 aa20.21■□□□□ 0.83
CLN8-209ENST00000635970 IL2RBP14784 551 aa20.21■□□□□ 0.83
CLN8-209ENST00000635970 PDE3BQ13370 1112 aa20.21■□□□□ 0.83
CLN8-209ENST00000635970 ZBTB47Q9UFB7 747 aaPredicted RBP20.21■□□□□ 0.83
CLN8-209ENST00000635970 DIAPH1O60610 1272 aaKnown RBP20.2■□□□□ 0.82
CLN8-209ENST00000635970 FAM182BQ5T319 152 aa20.2■□□□□ 0.82
CLN8-209ENST00000635970 TNS2Q63HR2 1409 aa20.19■□□□□ 0.82
CLN8-209ENST00000635970 PKD1L3Q7Z443 1732 aa20.19■□□□□ 0.82
CLN8-209ENST00000635970 TCERG1O14776 1098 aaKnown RBP20.19■□□□□ 0.82
CLN8-209ENST00000635970 DDB1Q16531 1140 aa20.19■□□□□ 0.82
CLN8-209ENST00000635970 KRT27Q7Z3Y8 459 aa20.19■□□□□ 0.82
CLN8-209ENST00000635970 AEBP1Q8IUX7 1158 aa20.19■□□□□ 0.82
CLN8-209ENST00000635970 OVOS2A0A0G2JMS6 1433 aa20.18■□□□□ 0.82
CLN8-209ENST00000635970 CFAP53Q96M91 514 aa20.18■□□□□ 0.82
CLN8-209ENST00000635970 CDCA7Q9BWT1 371 aaPredicted RBP20.18■□□□□ 0.82
CLN8-209ENST00000635970 RAPGEF4Q8WZA2 1011 aa20.16■□□□□ 0.82
CLN8-209ENST00000635970 SULT6B1Q6IMI4 303 aa20.15■□□□□ 0.82
CLN8-209ENST00000635970 U2SURPO15042 1029 aaKnown RBP20.15■□□□□ 0.82
CLN8-209ENST00000635970 HMOX1P09601 288 aa20.15■□□□□ 0.82
CLN8-209ENST00000635970 RRP1P56182 461 aaKnown RBP20.15■□□□□ 0.82
CLN8-209ENST00000635970 RTL5Q5HYW3 569 aaPredicted RBP20.15■□□□□ 0.82
CLN8-209ENST00000635970 KDRP35968 1356 aa20.14■□□□□ 0.82
CLN8-209ENST00000635970 EXOC5O00471 708 aa20.14■□□□□ 0.81
CLN8-209ENST00000635970 MS4A1P11836 297 aa20.14■□□□□ 0.81
CLN8-209ENST00000635970 TATP17735 454 aaPredicted RBP20.14■□□□□ 0.81
CLN8-209ENST00000635970 SBF2Q86WG5 1849 aa20.12■□□□□ 0.81
CLN8-209ENST00000635970 MARCH10Q8NA82 808 aaPredicted RBP20.12■□□□□ 0.81
CLN8-209ENST00000635970 ZCRB1Q8TBF4 217 aaKnown RBP20.1■□□□□ 0.81
CLN8-209ENST00000635970 RCAN3Q9UKA8 241 aa20.1■□□□□ 0.81
CLN8-209ENST00000635970 DDX54Q8TDD1 881 aaKnown RBP20.1■□□□□ 0.81
CLN8-209ENST00000635970 DOT1LQ8TEK3 1739 aa20.09■□□□□ 0.81
CLN8-209ENST00000635970 NBR1Q14596 966 aa20.09■□□□□ 0.81
CLN8-209ENST00000635970 TNS1Q9HBL0 1735 aaKnown RBP20.08■□□□□ 0.8
CLN8-209ENST00000635970 U2AF1L5P0DN76 240 aaPredicted RBP20.08■□□□□ 0.8
CLN8-209ENST00000635970 U2AF1Q01081 240 aaKnown RBP eCLIP20.08■□□□□ 0.8
CLN8-209ENST00000635970 TOGARAM1Q9Y4F4 1720 aa20.06■□□□□ 0.8
CLN8-209ENST00000635970 PCDH11XQ9BZA7 1347 aa20.06■□□□□ 0.8
CLN8-209ENST00000635970 PCDH11YQ9BZA8 1340 aa20.06■□□□□ 0.8
CLN8-209ENST00000635970 KAT6BQ8WYB5 2073 aa20.06■□□□□ 0.8
CLN8-209ENST00000635970 VIRMAQ69YN4 1812 aaKnown RBP20.05■□□□□ 0.8
CLN8-209ENST00000635970 CYP27B1O15528 508 aa20.04■□□□□ 0.8
CLN8-209ENST00000635970 FAM196AQ6ZSG2 479 aa20.04■□□□□ 0.8
CLN8-209ENST00000635970 RSPH6AQ9H0K4 717 aa20.04■□□□□ 0.8
CLN8-209ENST00000635970 NHSQ6T4R5 1651 aa20.04■□□□□ 0.8
CLN8-209ENST00000635970 SPG7Q9UQ90 795 aa20.04■□□□□ 0.8
CLN8-209ENST00000635970 UPF1Q92900 1129 aaKnown RBP eCLIP20.03■□□□□ 0.81e-6■■■□□ 18.5
CLN8-209ENST00000635970 PLEKHG2Q9H7P9 1386 aa20.03■□□□□ 0.8
CLN8-209ENST00000635970 PRKAR2BP31323 418 aa20.03■□□□□ 0.8
CLN8-209ENST00000635970 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.02■□□□□ 0.8
CLN8-209ENST00000635970 BCL9O00512 1426 aa20.01■□□□□ 0.79
CLN8-209ENST00000635970 SOCS7O14512 581 aa20.01■□□□□ 0.79
CLN8-209ENST00000635970 TRIM37O94972 964 aa20.01■□□□□ 0.79
CLN8-209ENST00000635970 PLEKHO1Q53GL0 409 aaPredicted RBP20.01■□□□□ 0.79
CLN8-209ENST00000635970 ACSBG1Q96GR2 724 aa20.01■□□□□ 0.79
CLN8-209ENST00000635970 BACH2Q9BYV9 841 aa20.01■□□□□ 0.79
CLN8-209ENST00000635970 ITGB4P16144 1822 aa20.01■□□□□ 0.79
CLN8-209ENST00000635970 PDE4AP27815 886 aa20.01■□□□□ 0.79
CLN8-209ENST00000635970 PTF1AQ7RTS3 328 aa20.01■□□□□ 0.79
CLN8-209ENST00000635970 EXOC6Q8TAG9 804 aa20.01■□□□□ 0.79
CLN8-209ENST00000635970 PHKG2P15735 406 aa20■□□□□ 0.79
CLN8-209ENST00000635970 ZNF530Q6P9A1 599 aaPredicted RBP20■□□□□ 0.79
CLN8-209ENST00000635970 BTAF1O14981 1849 aa20■□□□□ 0.79
CLN8-209ENST00000635970 AMOTQ4VCS5 1084 aa19.99■□□□□ 0.79
CLN8-209ENST00000635970 PHACTR3Q96KR7 559 aa19.99■□□□□ 0.79
CLN8-209ENST00000635970 MTHFSDQ2M296 383 aaKnown RBP19.99■□□□□ 0.79
CLN8-209ENST00000635970 DLG5Q8TDM6 1919 aa19.99■□□□□ 0.79
CLN8-209ENST00000635970 SCN11AQ9UI33 1791 aa19.98■□□□□ 0.79
CLN8-209ENST00000635970 KCNQ2O43526 872 aa19.98■□□□□ 0.79
CLN8-209ENST00000635970 FCHSD2O94868 740 aa19.98■□□□□ 0.79
CLN8-209ENST00000635970 WDR43Q15061 677 aaKnown RBP eCLIP19.97■□□□□ 0.79
CLN8-209ENST00000635970 IFNL2Q8IZJ0 200 aa19.97■□□□□ 0.79
CLN8-209ENST00000635970 DDRGK1Q96HY6 314 aa19.97■□□□□ 0.79
CLN8-209ENST00000635970 KDM6AO15550 1401 aaPredicted RBP19.96■□□□□ 0.79
CLN8-209ENST00000635970 ADAMTS8Q9UP79 889 aa19.95■□□□□ 0.78
CLN8-209ENST00000635970 C1orf141Q5JVX7 400 aa19.95■□□□□ 0.78
CLN8-209ENST00000635970 SYTL4Q96C24 671 aaPredicted RBP19.95■□□□□ 0.78
CLN8-209ENST00000635970 PLEKHF1Q96S99 279 aa19.95■□□□□ 0.78
CLN8-209ENST00000635970 NKX1-1Q15270 411 aaPredicted RBP19.94■□□□□ 0.78
CLN8-209ENST00000635970 ADAMTS7Q9UKP4 1686 aa19.94■□□□□ 0.78
CLN8-209ENST00000635970 CCDC146Q8IYE0 955 aa19.94■□□□□ 0.78
CLN8-209ENST00000635970 PRIM1P49642 420 aaKnown RBP19.93■□□□□ 0.78
CLN8-209ENST00000635970 AKAP4Q5JQC9 854 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms