RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 BARGINQ6ZT62 677 aa26.45■■□□□ 1.82
UPF3A-211ENST00000618700 USHBP1Q8N6Y0 703 aa26.44■■□□□ 1.82
UPF3A-211ENST00000618700 KDRP35968 1356 aa26.44■■□□□ 1.82
UPF3A-211ENST00000618700 MEGF6O75095 1541 aa26.41■■□□□ 1.82
UPF3A-211ENST00000618700 ONECUT3O60422 494 aaPredicted RBP26.41■■□□□ 1.82
UPF3A-211ENST00000618700 CCDC184Q52MB2 194 aa26.41■■□□□ 1.82
UPF3A-211ENST00000618700 NUDCQ9Y266 331 aa26.41■■□□□ 1.82
UPF3A-211ENST00000618700 PARP4Q9UKK3 1724 aaKnown RBP26.4■■□□□ 1.82
UPF3A-211ENST00000618700 FAM98CQ17RN3 349 aaKnown RBP26.4■■□□□ 1.82
UPF3A-211ENST00000618700 LRRC37A3O60309 1634 aa26.39■■□□□ 1.81
UPF3A-211ENST00000618700 OVOS2A0A0G2JMS6 1433 aa26.39■■□□□ 1.81
UPF3A-211ENST00000618700 U2SURPO15042 1029 aaKnown RBP26.38■■□□□ 1.81
UPF3A-211ENST00000618700 AEBP1Q8IUX7 1158 aa26.38■■□□□ 1.81
UPF3A-211ENST00000618700 PLEKHG2Q9H7P9 1386 aa26.37■■□□□ 1.81
UPF3A-211ENST00000618700 IL2RBP14784 551 aa26.37■■□□□ 1.81
UPF3A-211ENST00000618700 SULT6B1Q6IMI4 303 aa26.37■■□□□ 1.81
UPF3A-211ENST00000618700 CDCA7Q9BWT1 371 aaPredicted RBP26.37■■□□□ 1.81
UPF3A-211ENST00000618700 MIER1Q8N108 512 aa26.35■■□□□ 1.81
UPF3A-211ENST00000618700 MRS2Q9HD23 443 aa26.35■■□□□ 1.81
UPF3A-211ENST00000618700 PKD1L3Q7Z443 1732 aa26.34■■□□□ 1.81
UPF3A-211ENST00000618700 TNS2Q63HR2 1409 aa26.34■■□□□ 1.81
UPF3A-211ENST00000618700 U2AF1L5P0DN76 240 aaPredicted RBP26.34■■□□□ 1.81
UPF3A-211ENST00000618700 U2AF1Q01081 240 aaKnown RBP eCLIP26.34■■□□□ 1.81
UPF3A-211ENST00000618700 RAPGEF4Q8WZA2 1011 aa26.34■■□□□ 1.81
UPF3A-211ENST00000618700 HMOX1P09601 288 aa26.33■■□□□ 1.81
UPF3A-211ENST00000618700 CCER2I3L3R5 266 aa26.32■■□□□ 1.8
UPF3A-211ENST00000618700 SEPT12Q8IYM1 358 aa26.32■■□□□ 1.8
UPF3A-211ENST00000618700 SHANK3Q9BYB0 1731 aa26.31■■□□□ 1.8
UPF3A-211ENST00000618700 TATP17735 454 aaPredicted RBP26.31■■□□□ 1.8
UPF3A-211ENST00000618700 RSPH6AQ9H0K4 717 aa26.31■■□□□ 1.8
UPF3A-211ENST00000618700 BRWD3Q6RI45 1802 aa26.29■■□□□ 1.8
UPF3A-211ENST00000618700 A0A0G2JS52 829 aa26.28■■□□□ 1.8
UPF3A-211ENST00000618700 FCHSD2O94868 740 aa26.28■■□□□ 1.8
UPF3A-211ENST00000618700 MYT1Q01538 1121 aa26.28■■□□□ 1.8
UPF3A-211ENST00000618700 WDR43Q15061 677 aaKnown RBP eCLIP26.28■■□□□ 1.8
UPF3A-211ENST00000618700 PNISRQ8TF01 805 aaKnown RBP26.28■■□□□ 1.8
UPF3A-211ENST00000618700 DDB1Q16531 1140 aa26.26■■□□□ 1.79
UPF3A-211ENST00000618700 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.26■■□□□ 1.79
UPF3A-211ENST00000618700 PRKAR2BP31323 418 aa26.25■■□□□ 1.79
UPF3A-211ENST00000618700 EXOC5O00471 708 aa26.24■■□□□ 1.79
UPF3A-211ENST00000618700 ADAMTS8Q9UP79 889 aa26.24■■□□□ 1.79
UPF3A-211ENST00000618700 ZCRB1Q8TBF4 217 aaKnown RBP26.23■■□□□ 1.79
UPF3A-211ENST00000618700 PLEKHF1Q96S99 279 aa26.23■■□□□ 1.79
UPF3A-211ENST00000618700 ATF5Q9Y2D1 282 aaPredicted RBP26.23■■□□□ 1.79
UPF3A-211ENST00000618700 AMOTQ4VCS5 1084 aa26.21■■□□□ 1.79
UPF3A-211ENST00000618700 SPG7Q9UQ90 795 aa26.21■■□□□ 1.79
UPF3A-211ENST00000618700 PCDH11XQ9BZA7 1347 aa26.2■■□□□ 1.79
UPF3A-211ENST00000618700 PCDH11YQ9BZA8 1340 aa26.2■■□□□ 1.79
UPF3A-211ENST00000618700 PLEKHO1Q53GL0 409 aaPredicted RBP26.2■■□□□ 1.78
UPF3A-211ENST00000618700 KRT27Q7Z3Y8 459 aa26.19■■□□□ 1.78
UPF3A-211ENST00000618700 PHACTR3Q96KR7 559 aa26.19■■□□□ 1.78
UPF3A-211ENST00000618700 CYP27B1O15528 508 aa26.18■■□□□ 1.78
UPF3A-211ENST00000618700 PDE3BQ13370 1112 aa26.18■■□□□ 1.78
UPF3A-211ENST00000618700 MARCH10Q8NA82 808 aaPredicted RBP26.18■■□□□ 1.78
UPF3A-211ENST00000618700 PNNQ9H307 717 aaKnown RBP26.18■■□□□ 1.78
UPF3A-211ENST00000618700 UPF1Q92900 1129 aaKnown RBP eCLIP26.17■■□□□ 1.78
UPF3A-211ENST00000618700 ZNF219Q9P2Y4 722 aaPredicted RBP26.17■■□□□ 1.78
UPF3A-211ENST00000618700 MTHFSDQ2M296 383 aaKnown RBP26.16■■□□□ 1.78
UPF3A-211ENST00000618700 BCL9O00512 1426 aa26.15■■□□□ 1.78
UPF3A-211ENST00000618700 ZNF530Q6P9A1 599 aaPredicted RBP26.15■■□□□ 1.78
UPF3A-211ENST00000618700 DDX54Q8TDD1 881 aaKnown RBP26.15■■□□□ 1.78
UPF3A-211ENST00000618700 PHKG2P15735 406 aa26.14■■□□□ 1.78
UPF3A-211ENST00000618700 GAS2L2Q8NHY3 880 aa26.14■■□□□ 1.78
UPF3A-211ENST00000618700 RUNDC1Q96C34 613 aa26.14■■□□□ 1.78
UPF3A-211ENST00000618700 CCDC146Q8IYE0 955 aa26.13■■□□□ 1.77
UPF3A-211ENST00000618700 EP400Q96L91 3159 aa26.13■■□□□ 1.77
UPF3A-211ENST00000618700 MAPK8IP3Q9UPT6 1336 aa26.13■■□□□ 1.77
UPF3A-211ENST00000618700 IFNL2Q8IZJ0 200 aa26.12■■□□□ 1.77
UPF3A-211ENST00000618700 NEFMP07197 916 aa26.11■■□□□ 1.77
UPF3A-211ENST00000618700 ATXN8OSP0DMR3 200 aa26.11■■□□□ 1.77
UPF3A-211ENST00000618700 NKX1-1Q15270 411 aaPredicted RBP26.11■■□□□ 1.77
UPF3A-211ENST00000618700 FAM182BQ5T319 152 aa26.11■■□□□ 1.77
UPF3A-211ENST00000618700 FAM9BQ8IZU0 186 aa26.11■■□□□ 1.77
UPF3A-211ENST00000618700 ADAMTS7Q9UKP4 1686 aa26.11■■□□□ 1.77
UPF3A-211ENST00000618700 AKAP4Q5JQC9 854 aa26.1■■□□□ 1.77
UPF3A-211ENST00000618700 TOGARAM1Q9Y4F4 1720 aa26.1■■□□□ 1.77
UPF3A-211ENST00000618700 MAP3K5Q99683 1374 aa26.09■■□□□ 1.77
UPF3A-211ENST00000618700 C1orf141Q5JVX7 400 aa26.09■■□□□ 1.77
UPF3A-211ENST00000618700 DOT1LQ8TEK3 1739 aa26.08■■□□□ 1.77
UPF3A-211ENST00000618700 KDM6AO15550 1401 aaPredicted RBP26.08■■□□□ 1.77
UPF3A-211ENST00000618700 NFE2L2Q16236 605 aa26.08■■□□□ 1.77
UPF3A-211ENST00000618700 DSG3P32926 999 aa26.07■■□□□ 1.76
UPF3A-211ENST00000618700 DLG5Q8TDM6 1919 aa26.06■■□□□ 1.76
UPF3A-211ENST00000618700 HSP90AB1P08238 724 aaKnown RBP26.06■■□□□ 1.76
UPF3A-211ENST00000618700 FAM196AQ6ZSG2 479 aa26.06■■□□□ 1.76
UPF3A-211ENST00000618700 SBF2Q86WG5 1849 aa26.06■■□□□ 1.76
UPF3A-211ENST00000618700 TMPOP42166 694 aaKnown RBP26.05■■□□□ 1.76
UPF3A-211ENST00000618700 NHSQ6T4R5 1651 aa26.05■■□□□ 1.76
UPF3A-211ENST00000618700 SCN11AQ9UI33 1791 aa26.05■■□□□ 1.76
UPF3A-211ENST00000618700 DCAF5Q96JK2 942 aa26.04■■□□□ 1.76
UPF3A-211ENST00000618700 MRC1P22897 1456 aa26.04■■□□□ 1.76
UPF3A-211ENST00000618700 GNAT3A8MTJ3 354 aa26.03■■□□□ 1.76
UPF3A-211ENST00000618700 APAF1O14727 1248 aa26.02■■□□□ 1.76
UPF3A-211ENST00000618700 VIRMAQ69YN4 1812 aaKnown RBP26.02■■□□□ 1.76
UPF3A-211ENST00000618700 MPRIPQ6WCQ1 1025 aa26.01■■□□□ 1.75
UPF3A-211ENST00000618700 CEMIPQ8WUJ3 1361 aa26■■□□□ 1.75
UPF3A-211ENST00000618700 HTATSF1O43719 755 aaKnown RBP26■■□□□ 1.75
UPF3A-211ENST00000618700 RRP7AQ9Y3A4 280 aaKnown RBP26■■□□□ 1.75
UPF3A-211ENST00000618700 RNMTO43148 476 aaKnown RBP25.99■■□□□ 1.75
UPF3A-211ENST00000618700 ITGB4P16144 1822 aa25.98■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms