RNA–Protein interactions for RNA: ENST00000609587.1

SMCHD1-213, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

Gene SMCHD1, Length 460 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-213ENST00000609587 ADD1P35611 737 aaKnown RBP9.07□□□□□ -0.96
SMCHD1-213ENST00000609587 SKIV2LQ15477 1246 aaKnown RBP9.07□□□□□ -0.96
SMCHD1-213ENST00000609587 SH3D19Q5HYK7 790 aa9.07□□□□□ -0.96
SMCHD1-213ENST00000609587 LYSMD3Q7Z3D4 306 aa9.07□□□□□ -0.96
SMCHD1-213ENST00000609587 ZC3H4Q9UPT8 1303 aaKnown RBP9.06□□□□□ -0.96
SMCHD1-213ENST00000609587 PTGIRP43119 386 aa9.06□□□□□ -0.96
SMCHD1-213ENST00000609587 RAB15P59190 212 aa9.06□□□□□ -0.96
SMCHD1-213ENST00000609587 TRIM22Q8IYM9 498 aa9.06□□□□□ -0.96
SMCHD1-213ENST00000609587 ADAM32Q8TC27 787 aa9.06□□□□□ -0.96
SMCHD1-213ENST00000609587 BCRP11274 1271 aa9.05□□□□□ -0.96
SMCHD1-213ENST00000609587 RHOQP17081 205 aa9.05□□□□□ -0.96
SMCHD1-213ENST00000609587 NR6A1Q15406 480 aa9.05□□□□□ -0.96
SMCHD1-213ENST00000609587 NBPF20Q3BBV1 942 aa9.05□□□□□ -0.96
SMCHD1-213ENST00000609587 PODNQ7Z5L7 613 aa9.05□□□□□ -0.96
SMCHD1-213ENST00000609587 GALNT6Q8NCL4 622 aa9.05□□□□□ -0.96
SMCHD1-213ENST00000609587 ACDQ96AP0 544 aa9.05□□□□□ -0.96
SMCHD1-213ENST00000609587 GOPCQ9HD26 462 aa9.05□□□□□ -0.96
SMCHD1-213ENST00000609587 ERVH48-1M5A8F1 160 aa9.04□□□□□ -0.96
SMCHD1-213ENST00000609587 BEND7Q8N7W2 519 aaPredicted RBP9.04□□□□□ -0.96
SMCHD1-213ENST00000609587 IL27Q8NEV9 243 aa9.04□□□□□ -0.96
SMCHD1-213ENST00000609587 POLR3EQ9NVU0 708 aa9.04□□□□□ -0.96
SMCHD1-213ENST00000609587 PRICKLE2Q7Z3G6 844 aa9.03□□□□□ -0.96
SMCHD1-213ENST00000609587 K7ELQ4 463 aaPredicted RBP9.02□□□□□ -0.97
SMCHD1-213ENST00000609587 PTK2Q05397 1052 aa9.02□□□□□ -0.97
SMCHD1-213ENST00000609587 DBN1Q16643 649 aa9.02□□□□□ -0.97
SMCHD1-213ENST00000609587 FBXO31Q5XUX0 539 aaPredicted RBP9.02□□□□□ -0.97
SMCHD1-213ENST00000609587 NEDD1Q8NHV4 660 aa9.02□□□□□ -0.97
SMCHD1-213ENST00000609587 GPSM3Q9Y4H4 160 aa9.02□□□□□ -0.97
SMCHD1-213ENST00000609587 RNF144AP50876 292 aaPredicted RBP9.01□□□□□ -0.97
SMCHD1-213ENST00000609587 GMCL1Q96IK5 515 aa9.01□□□□□ -0.97
SMCHD1-213ENST00000609587 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.01□□□□□ -0.97
SMCHD1-213ENST00000609587 GTF3C3Q9Y5Q9 886 aa9.01□□□□□ -0.97
SMCHD1-213ENST00000609587 ESPNB1AK53 854 aa9□□□□□ -0.97
SMCHD1-213ENST00000609587 GTPBP3Q969Y2 492 aaKnown RBP9□□□□□ -0.97
SMCHD1-213ENST00000609587 CYLDQ9NQC7 956 aa9□□□□□ -0.97
SMCHD1-213ENST00000609587 RIPOR1Q6ZS17 1223 aa8.99□□□□□ -0.97
SMCHD1-213ENST00000609587 Q8N3U1 123 aa8.99□□□□□ -0.97
SMCHD1-213ENST00000609587 FOXR1Q6PIV2 292 aa8.98□□□□□ -0.97
SMCHD1-213ENST00000609587 PROCA1Q8NCQ7 364 aaPredicted RBP8.98□□□□□ -0.97
SMCHD1-213ENST00000609587 LRRC4BQ9NT99 713 aa8.98□□□□□ -0.97
SMCHD1-213ENST00000609587 KRBA1A5PL33 1030 aa8.97□□□□□ -0.97
SMCHD1-213ENST00000609587 BAG6P46379 1132 aa8.97□□□□□ -0.97
SMCHD1-213ENST00000609587 SNRPNP63162 240 aaKnown RBP8.97□□□□□ -0.97
SMCHD1-213ENST00000609587 EPS8L1Q8TE68 723 aa8.97□□□□□ -0.97
SMCHD1-213ENST00000609587 PPP2R2DQ66LE6 453 aa8.96□□□□□ -0.98
SMCHD1-213ENST00000609587 DYRK1BQ9Y463 629 aa8.96□□□□□ -0.98
SMCHD1-213ENST00000609587 OIP5O43482 229 aa8.95□□□□□ -0.98
SMCHD1-213ENST00000609587 PCMTD1Q96MG8 357 aaPredicted RBP8.95□□□□□ -0.98
SMCHD1-213ENST00000609587 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.94□□□□□ -0.98
SMCHD1-213ENST00000609587 MX2P20592 715 aa8.94□□□□□ -0.98
SMCHD1-213ENST00000609587 DZIP3Q86Y13 1208 aaKnown RBP8.94□□□□□ -0.98
SMCHD1-213ENST00000609587 SHISA8B8ZZ34 492 aa8.93□□□□□ -0.98
SMCHD1-213ENST00000609587 ATP5J2-PTCD1G3V325 749 aa8.93□□□□□ -0.98
SMCHD1-213ENST00000609587 MEN1O00255 615 aa8.93□□□□□ -0.98
SMCHD1-213ENST00000609587 COL8A1P27658 744 aa8.93□□□□□ -0.98
SMCHD1-213ENST00000609587 GPC1P35052 558 aa8.93□□□□□ -0.98
SMCHD1-213ENST00000609587 TRERF1Q96PN7 1200 aa8.93□□□□□ -0.98
SMCHD1-213ENST00000609587 KRTAP9-2Q9BYQ4 174 aa8.93□□□□□ -0.98
SMCHD1-213ENST00000609587 HMX1Q9NP08 348 aaPredicted RBP8.93□□□□□ -0.98
SMCHD1-213ENST00000609587 H7C1W4 665 aa8.92□□□□□ -0.98
SMCHD1-213ENST00000609587 FURINP09958 794 aa8.92□□□□□ -0.98
SMCHD1-213ENST00000609587 GAS2L1Q99501 681 aaPredicted RBP8.92□□□□□ -0.98
SMCHD1-213ENST00000609587 OXCT2Q9BYC2 517 aaPredicted RBP8.92□□□□□ -0.98
SMCHD1-213ENST00000609587 ATP1B4Q9UN42 357 aaPredicted RBP8.92□□□□□ -0.98
SMCHD1-213ENST00000609587 THBS1P07996 1170 aa8.91□□□□□ -0.98
SMCHD1-213ENST00000609587 POU4F2Q12837 409 aa8.91□□□□□ -0.98
SMCHD1-213ENST00000609587 SEPT12Q8IYM1 358 aa8.91□□□□□ -0.98
SMCHD1-213ENST00000609587 PSMG3-AS1Q96PY0 264 aa8.91□□□□□ -0.98
SMCHD1-213ENST00000609587 NBPF10Q6P3W6 841 aaKnown RBP8.9□□□□□ -0.98
SMCHD1-213ENST00000609587 NBPF15Q8N660 670 aa8.9□□□□□ -0.98
SMCHD1-213ENST00000609587 A0A1W2PRU2 124 aa8.89□□□□□ -0.99
SMCHD1-213ENST00000609587 C1orf229Q6ZS94 237 aaPredicted RBP8.89□□□□□ -0.99
SMCHD1-213ENST00000609587 NSFL1CQ9UNZ2 370 aaKnown RBP8.89□□□□□ -0.99
SMCHD1-213ENST00000609587 KRTAP9-6A0A140TA67 174 aa8.88□□□□□ -0.99
SMCHD1-213ENST00000609587 AP1G2O75843 785 aa8.88□□□□□ -0.99
SMCHD1-213ENST00000609587 RFC5P40937 340 aa8.88□□□□□ -0.99
SMCHD1-213ENST00000609587 NUCKS1Q9H1E3 243 aaKnown RBP8.88□□□□□ -0.99
SMCHD1-213ENST00000609587 MKL2Q9ULH7 1088 aa8.88□□□□□ -0.99
SMCHD1-213ENST00000609587 MAP2K3P46734 347 aa8.87□□□□□ -0.99
SMCHD1-213ENST00000609587 SPATA31C2B4DYI2 1134 aa8.86□□□□□ -0.99
SMCHD1-213ENST00000609587 USP17L8P0C7I0 530 aa8.86□□□□□ -0.99
SMCHD1-213ENST00000609587 ERVK-9P63128 1117 aa8.86□□□□□ -0.99
SMCHD1-213ENST00000609587 SLC27A3Q5K4L6 730 aa8.86□□□□□ -0.99
SMCHD1-213ENST00000609587 ALYREFQ86V81 257 aaKnown RBP8.86□□□□□ -0.99
SMCHD1-213ENST00000609587 PNMA1Q8ND90 353 aa8.86□□□□□ -0.99
SMCHD1-213ENST00000609587 GRIP2Q9C0E4 1043 aa8.86□□□□□ -0.99
SMCHD1-213ENST00000609587 HOXB4P17483 251 aaPredicted RBP8.85□□□□□ -0.99
SMCHD1-213ENST00000609587 CLN3Q13286 438 aa8.85□□□□□ -0.99
SMCHD1-213ENST00000609587 TMEM259Q4ZIN3 620 aa8.85□□□□□ -0.99
SMCHD1-213ENST00000609587 GIGYF1O75420 1035 aaPredicted RBP8.84□□□□□ -0.99
SMCHD1-213ENST00000609587 ITGB7P26010 798 aa8.84□□□□□ -0.99
SMCHD1-213ENST00000609587 WASLO00401 505 aaPredicted RBP8.83□□□□□ -1
SMCHD1-213ENST00000609587 F11P03951 625 aa8.83□□□□□ -1
SMCHD1-213ENST00000609587 SCTRP47872 440 aa8.83□□□□□ -1
SMCHD1-213ENST00000609587 GRIN2CQ14957 1233 aa8.83□□□□□ -1
SMCHD1-213ENST00000609587 WDR44Q5JSH3 913 aa8.83□□□□□ -1
SMCHD1-213ENST00000609587 ERICH6Q7L0X2 663 aa8.83□□□□□ -1
SMCHD1-213ENST00000609587 KLRG1Q96E93 195 aa8.83□□□□□ -1
SMCHD1-213ENST00000609587 NLRP3Q96P20 1036 aa8.83□□□□□ -1
SMCHD1-213ENST00000609587 SUV39H2Q9H5I1 410 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms