RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, human

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CIITA-208	ENST00000572665	DIXDC1	Q155Q3	683 aa		13.99	□□□□□ -0.17
CIITA-208	ENST00000572665	LAPTM4B	Q86VI4	370 aa		13.99	□□□□□ -0.17
CIITA-208	ENST00000572665	TBX22	Q9Y458	520 aa		13.99	□□□□□ -0.17
CIITA-208	ENST00000572665	RDH13	Q8NBN7	331 aa		13.98	□□□□□ -0.17
CIITA-208	ENST00000572665	NCOA3	Q9Y6Q9	1424 aa		13.98	□□□□□ -0.17
CIITA-208	ENST00000572665	ROBO1	Q9Y6N7	1651 aa		13.98	□□□□□ -0.17
CIITA-208	ENST00000572665	SPIRE2	Q8WWL2	714 aa		13.97	□□□□□ -0.17
CIITA-208	ENST00000572665	POLR3E	Q9NVU0	708 aa		13.97	□□□□□ -0.17
CIITA-208	ENST00000572665	PIK3R4	Q99570	1358 aa		13.96	□□□□□ -0.17
CIITA-208	ENST00000572665	ADGRD1	Q6QNK2	874 aa		13.96	□□□□□ -0.17
CIITA-208	ENST00000572665	SPHKAP	Q2M3C7	1700 aa		13.95	□□□□□ -0.18
CIITA-208	ENST00000572665	CLK2	P49760	499 aa	Known RBP	13.94	□□□□□ -0.18
CIITA-208	ENST00000572665	NUTM1	Q86Y26	1132 aa		13.94	□□□□□ -0.18
CIITA-208	ENST00000572665	PROCA1	Q8NCQ7	364 aa	Predicted RBP	13.94	□□□□□ -0.18
CIITA-208	ENST00000572665	SLAIN2	Q9P270	581 aa		13.94	□□□□□ -0.18
CIITA-208	ENST00000572665	TRPM2	O94759	1503 aa		13.94	□□□□□ -0.18
CIITA-208	ENST00000572665	SLC10A3	P09131	477 aa		13.93	□□□□□ -0.18
CIITA-208	ENST00000572665	SAMD7	Q7Z3H4	446 aa		13.93	□□□□□ -0.18
CIITA-208	ENST00000572665	PHLPP1	O60346	1717 aa		13.92	□□□□□ -0.18
CIITA-208	ENST00000572665	HR	O43593	1189 aa		13.91	□□□□□ -0.18
CIITA-208	ENST00000572665	ATF3	P18847	181 aa		13.91	□□□□□ -0.18
CIITA-208	ENST00000572665	MRPL50	Q8N5N7	158 aa	Known RBP	13.91	□□□□□ -0.18
CIITA-208	ENST00000572665	ZFR	Q96KR1	1074 aa	Known RBP	13.91	□□□□□ -0.18
CIITA-208	ENST00000572665	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	13.91	□□□□□ -0.18
CIITA-208	ENST00000572665	GCGR	P47871	477 aa		13.9	□□□□□ -0.18
CIITA-208	ENST00000572665	SLC4A3	P48751	1232 aa		13.9	□□□□□ -0.18
CIITA-208	ENST00000572665	ZNF326	Q5BKZ1	582 aa	Known RBP	13.9	□□□□□ -0.18
CIITA-208	ENST00000572665	PPARGC1B	Q86YN6	1023 aa	Known RBP	13.9	□□□□□ -0.18
CIITA-208	ENST00000572665	SLF2	Q8IX21	1173 aa		13.9	□□□□□ -0.18
CIITA-208	ENST00000572665	C19orf44	Q9H6X5	657 aa		13.9	□□□□□ -0.18
CIITA-208	ENST00000572665	LIMD1	Q9UGP4	676 aa		13.9	□□□□□ -0.18
CIITA-208	ENST00000572665	KIF1B	O60333	1816 aa		13.9	□□□□□ -0.18
CIITA-208	ENST00000572665	ADAMTS13	Q76LX8	1427 aa		13.9	□□□□□ -0.19
CIITA-208	ENST00000572665	RRBP1	Q9P2E9	1410 aa	Known RBP	13.9	□□□□□ -0.19
CIITA-208	ENST00000572665	NUTM2D	Q5VT03	806 aa	Predicted RBP	13.89	□□□□□ -0.19
CIITA-208	ENST00000572665	RIC3	Q7Z5B4	369 aa		13.89	□□□□□ -0.19
CIITA-208	ENST00000572665	JCAD	Q9P266	1359 aa		13.88	□□□□□ -0.19
CIITA-208	ENST00000572665	KDM4A	O75164	1064 aa		13.88	□□□□□ -0.19
CIITA-208	ENST00000572665	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	13.87	□□□□□ -0.19
CIITA-208	ENST00000572665	MOXD2P	A6NHM9	499 aa		13.87	□□□□□ -0.19
CIITA-208	ENST00000572665	SPTLC1	O15269	473 aa		13.87	□□□□□ -0.19
CIITA-208	ENST00000572665	RSBN1L	Q6PCB5	846 aa	Predicted RBP	13.87	□□□□□ -0.19
CIITA-208	ENST00000572665	AMOTL2	Q9Y2J4	779 aa		13.87	□□□□□ -0.19
CIITA-208	ENST00000572665	SETBP1	Q9Y6X0	1596 aa		13.87	□□□□□ -0.19
CIITA-208	ENST00000572665	USP46	P62068	366 aa		13.86	□□□□□ -0.19
CIITA-208	ENST00000572665	ANKRD13D	Q6ZTN6	518 aa		13.86	□□□□□ -0.19
CIITA-208	ENST00000572665	DCC	P43146	1447 aa		13.86	□□□□□ -0.19
CIITA-208	ENST00000572665	GJA5	P36382	358 aa		13.85	□□□□□ -0.19
CIITA-208	ENST00000572665	TUSC1	Q2TAM9	212 aa		13.85	□□□□□ -0.19
CIITA-208	ENST00000572665	NAIP	Q13075	1403 aa		13.84	□□□□□ -0.19
CIITA-208	ENST00000572665	RNF40	O75150	1001 aa		13.84	□□□□□ -0.19
CIITA-208	ENST00000572665	NDUFV2	P19404	249 aa		13.84	□□□□□ -0.19
CIITA-208	ENST00000572665	SPATA31A6	Q5VVP1	1343 aa		13.84	□□□□□ -0.19
CIITA-208	ENST00000572665	HOXA2	O43364	376 aa		13.83	□□□□□ -0.2
CIITA-208	ENST00000572665	TRIM52	Q96A61	297 aa		13.83	□□□□□ -0.2
CIITA-208	ENST00000572665	XRN1	Q8IZH2	1706 aa	Known RBP	13.83	□□□□□ -0.2
CIITA-208	ENST00000572665	CLTCL1	P53675	1640 aa		13.82	□□□□□ -0.2
CIITA-208	ENST00000572665	COL16A1	Q07092	1604 aa	Predicted RBP	13.82	□□□□□ -0.2
CIITA-208	ENST00000572665	AHDC1	Q5TGY3	1603 aa	Predicted RBP	13.82	□□□□□ -0.2
CIITA-208	ENST00000572665	NRXN3	Q9Y4C0	1643 aa		13.82	□□□□□ -0.2
CIITA-208	ENST00000572665	CFH	P08603	1231 aa		13.82	□□□□□ -0.2
CIITA-208	ENST00000572665	FLII	Q13045	1269 aa		13.82	□□□□□ -0.2
CIITA-208	ENST00000572665	LRCH3	Q96II8	777 aa		13.82	□□□□□ -0.2
CIITA-208	ENST00000572665	HFM1	A2PYH4	1435 aa		13.81	□□□□□ -0.2
CIITA-208	ENST00000572665	KRTAP3-3	Q9BYR6	98 aa		13.81	□□□□□ -0.2
CIITA-208	ENST00000572665	KRTAP3-2	Q9BYR7	98 aa		13.81	□□□□□ -0.2
CIITA-208	ENST00000572665	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	13.81	□□□□□ -0.2
CIITA-208	ENST00000572665	RGS17	Q9UGC6	210 aa	Predicted RBP	13.81	□□□□□ -0.2
CIITA-208	ENST00000572665	NEXMIF	Q5QGS0	1516 aa		13.8	□□□□□ -0.2
CIITA-208	ENST00000572665	SHPRH	Q149N8	1683 aa		13.8	□□□□□ -0.2
CIITA-208	ENST00000572665	MEX3C	Q5U5Q3	659 aa	Known RBP	13.8	□□□□□ -0.2
CIITA-208	ENST00000572665	STAC3	Q96MF2	364 aa		13.8	□□□□□ -0.2
CIITA-208	ENST00000572665	RPGRIP1L	Q68CZ1	1315 aa		13.8	□□□□□ -0.2
CIITA-208	ENST00000572665	ACIN1	Q9UKV3	1341 aa	Known RBP	13.8	□□□□□ -0.2
CIITA-208	ENST00000572665	PTPRU	Q92729	1446 aa		13.8	□□□□□ -0.2
CIITA-208	ENST00000572665	PPP2R2D	Q66LE6	453 aa		13.79	□□□□□ -0.2
CIITA-208	ENST00000572665	GOLGA8CP	A6NN73	597 aa		13.78	□□□□□ -0.2
CIITA-208	ENST00000572665	CSPP1	Q1MSJ5	1256 aa		13.78	□□□□□ -0.2
CIITA-208	ENST00000572665	ZNF772	Q68DY9	489 aa	Predicted RBP	13.78	□□□□□ -0.2
CIITA-208	ENST00000572665	ANKK1	Q8NFD2	765 aa		13.78	□□□□□ -0.2
CIITA-208	ENST00000572665	PCDHB15	Q9Y5E8	787 aa		13.78	□□□□□ -0.2
CIITA-208	ENST00000572665	RFC5	P40937	340 aa		13.77	□□□□□ -0.21
CIITA-208	ENST00000572665	NECTIN2	Q92692	538 aa		13.77	□□□□□ -0.21
CIITA-208	ENST00000572665	ADGRL3	Q9HAR2	1447 aa		13.76	□□□□□ -0.21
CIITA-208	ENST00000572665	MET	P08581	1390 aa		13.76	□□□□□ -0.21
CIITA-208	ENST00000572665	FDX1	P10109	184 aa		13.76	□□□□□ -0.21
CIITA-208	ENST00000572665	FUT2	Q10981	343 aa		13.76	□□□□□ -0.21
CIITA-208	ENST00000572665	QPCT	Q16769	361 aa		13.76	□□□□□ -0.21
CIITA-208	ENST00000572665	POTEA	Q6S8J7	498 aa		13.76	□□□□□ -0.21
CIITA-208	ENST00000572665	BRINP3	Q76B58	766 aa		13.76	□□□□□ -0.21
CIITA-208	ENST00000572665	HLA-C	Q95604	372 aa		13.76	□□□□□ -0.21
CIITA-208	ENST00000572665	ASXL1	Q8IXJ9	1541 aa		13.75	□□□□□ -0.21
CIITA-208	ENST00000572665	LILRB3	O75022	631 aa		13.75	□□□□□ -0.21
CIITA-208	ENST00000572665	KMT5B	Q4FZB7	885 aa		13.75	□□□□□ -0.21
CIITA-208	ENST00000572665	LRRC59	Q96AG4	307 aa	Known RBP	13.75	□□□□□ -0.21
CIITA-208	ENST00000572665	NHSL1	Q5SYE7	1610 aa		13.75	□□□□□ -0.21
CIITA-208	ENST00000572665	MST1R	Q04912	1400 aa		13.74	□□□□□ -0.21
CIITA-208	ENST00000572665	PPL	O60437	1756 aa		13.74	□□□□□ -0.21
CIITA-208	ENST00000572665	SETD1A	O15047	1707 aa	Known RBP	13.74	□□□□□ -0.21
CIITA-208	ENST00000572665	SOWAHB	A6NEL2	793 aa		13.74	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms