RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 TRIM35Q9UPQ4 493 aa11.29□□□□□ -0.6
VPS53-214ENST00000572607 COLQQ9Y215 455 aaPredicted RBP11.29□□□□□ -0.6
VPS53-214ENST00000572607 A0A1W2PP64 1363 aa11.28□□□□□ -0.6
VPS53-214ENST00000572607 AKAP12Q02952 1782 aa11.28□□□□□ -0.6
VPS53-214ENST00000572607 PIK3C2AO00443 1686 aa11.28□□□□□ -0.6
VPS53-214ENST00000572607 USP35Q9P2H5 1018 aa11.28□□□□□ -0.6
VPS53-214ENST00000572607 SPATA31A1Q5TZJ5 1347 aa11.28□□□□□ -0.6
VPS53-214ENST00000572607 CD163L1Q9NR16 1453 aa11.27□□□□□ -0.6
VPS53-214ENST00000572607 MON2Q7Z3U7 1717 aa11.27□□□□□ -0.61
VPS53-214ENST00000572607 PEAK1Q9H792 1746 aa11.27□□□□□ -0.61
VPS53-214ENST00000572607 DCAF8Q5TAQ9 597 aa11.27□□□□□ -0.61
VPS53-214ENST00000572607 SBF2Q86WG5 1849 aa11.27□□□□□ -0.61
VPS53-214ENST00000572607 AATKQ6ZMQ8 1374 aa11.27□□□□□ -0.61
VPS53-214ENST00000572607 USP31Q70CQ4 1352 aa11.27□□□□□ -0.61
VPS53-214ENST00000572607 CAMTA1Q9Y6Y1 1673 aa11.27□□□□□ -0.61
VPS53-214ENST00000572607 EIF4G2P78344 907 aaKnown RBP eCLIP11.26□□□□□ -0.61
VPS53-214ENST00000572607 POTEGQ6S5H5 508 aa11.26□□□□□ -0.61
VPS53-214ENST00000572607 NME9Q86XW9 330 aa11.26□□□□□ -0.61
VPS53-214ENST00000572607 ANKRD36BQ8N2N9 1353 aa11.26□□□□□ -0.61
VPS53-214ENST00000572607 PARP4Q9UKK3 1724 aaKnown RBP11.26□□□□□ -0.61
VPS53-214ENST00000572607 CASZ1Q86V15 1759 aa11.26□□□□□ -0.61
VPS53-214ENST00000572607 COL5A2P05997 1499 aaPredicted RBP11.25□□□□□ -0.61
VPS53-214ENST00000572607 CSB-PGBD3P0DP91 1061 aa11.25□□□□□ -0.61
VPS53-214ENST00000572607 LARP1Q6PKG0 1096 aaKnown RBP11.25□□□□□ -0.61
VPS53-214ENST00000572607 TOM1L2Q6ZVM7 507 aa11.25□□□□□ -0.61
VPS53-214ENST00000572607 TCP11L2Q8N4U5 519 aa11.25□□□□□ -0.61
VPS53-214ENST00000572607 PLSCR2Q9NRY7 297 aa11.25□□□□□ -0.61
VPS53-214ENST00000572607 THRAP3Q9Y2W1 955 aaKnown RBP11.25□□□□□ -0.61
VPS53-214ENST00000572607 RGPD3A6NKT7 1758 aaPredicted RBP11.24□□□□□ -0.61
VPS53-214ENST00000572607 RGPD4Q7Z3J3 1758 aa11.24□□□□□ -0.61
VPS53-214ENST00000572607 TRIM37O94972 964 aa11.24□□□□□ -0.61
VPS53-214ENST00000572607 BARGINQ6ZT62 677 aa11.24□□□□□ -0.61
VPS53-214ENST00000572607 ARHGEF25Q86VW2 580 aa11.24□□□□□ -0.61
VPS53-214ENST00000572607 COG3Q96JB2 828 aa11.24□□□□□ -0.61
VPS53-214ENST00000572607 POLR3GLQ9BT43 218 aa11.24□□□□□ -0.61
VPS53-214ENST00000572607 TMEM106CQ9BVX2 250 aa11.24□□□□□ -0.61
VPS53-214ENST00000572607 CRB1P82279 1406 aa11.24□□□□□ -0.61
VPS53-214ENST00000572607 PDE3BQ13370 1112 aa11.23□□□□□ -0.61
VPS53-214ENST00000572607 PARD3Q8TEW0 1356 aa11.23□□□□□ -0.61
VPS53-214ENST00000572607 WDR17Q8IZU2 1322 aa11.22□□□□□ -0.61
VPS53-214ENST00000572607 WNK3Q9BYP7 1800 aa11.22□□□□□ -0.61
VPS53-214ENST00000572607 LRRC37A3O60309 1634 aa11.21□□□□□ -0.61
VPS53-214ENST00000572607 NFAT5O94916 1531 aa11.21□□□□□ -0.61
VPS53-214ENST00000572607 ABCC6O95255 1503 aa11.21□□□□□ -0.61
VPS53-214ENST00000572607 OVOS2A0A0J9YW53 1432 aa11.21□□□□□ -0.61
VPS53-214ENST00000572607 OVOS2Q6IE36 1432 aa11.21□□□□□ -0.61
VPS53-214ENST00000572607 HSPA5P11021 654 aaKnown RBP11.21□□□□□ -0.61
VPS53-214ENST00000572607 FAM196AQ6ZSG2 479 aa11.21□□□□□ -0.61
VPS53-214ENST00000572607 UTRNP46939 3433 aa11.2□□□□□ -0.62
VPS53-214ENST00000572607 APBA3O96018 575 aa11.2□□□□□ -0.62
VPS53-214ENST00000572607 PYGBP11216 843 aa11.2□□□□□ -0.62
VPS53-214ENST00000572607 CDCA7Q9BWT1 371 aaPredicted RBP11.2□□□□□ -0.62
VPS53-214ENST00000572607 AXIN2Q9Y2T1 843 aa11.2□□□□□ -0.62
VPS53-214ENST00000572607 COL18A1P39060 1754 aa11.2□□□□□ -0.62
VPS53-214ENST00000572607 USP54Q70EL1 1684 aa11.2□□□□□ -0.62
VPS53-214ENST00000572607 LCE2DQ5TA82 110 aaPredicted RBP11.19□□□□□ -0.62
VPS53-214ENST00000572607 FAM163AQ96GL9 167 aaPredicted RBP11.19□□□□□ -0.62
VPS53-214ENST00000572607 CARD10Q9BWT7 1032 aa11.19□□□□□ -0.62
VPS53-214ENST00000572607 PCDH10Q9P2E7 1040 aa11.19□□□□□ -0.62
VPS53-214ENST00000572607 CCDC7Q96M83 1385 aa11.18□□□□□ -0.62
VPS53-214ENST00000572607 C11orf95C9JLR9 678 aaPredicted RBP11.18□□□□□ -0.62
VPS53-214ENST00000572607 AMPHP49418 695 aa11.18□□□□□ -0.62
VPS53-214ENST00000572607 DDB1Q16531 1140 aa11.18□□□□□ -0.62
VPS53-214ENST00000572607 GGNBP2Q9H3C7 697 aa11.18□□□□□ -0.62
VPS53-214ENST00000572607 NSD3Q9BZ95 1437 aa11.18□□□□□ -0.62
VPS53-214ENST00000572607 MYOM1P52179 1685 aa11.17□□□□□ -0.62
VPS53-214ENST00000572607 ERBB3P21860 1342 aa11.17□□□□□ -0.62
VPS53-214ENST00000572607 YY1P25490 414 aa11.17□□□□□ -0.62
VPS53-214ENST00000572607 VASPP50552 380 aaPredicted RBP11.17□□□□□ -0.62
VPS53-214ENST00000572607 ANKRD24Q8TF21 1146 aa11.17□□□□□ -0.62
VPS53-214ENST00000572607 NLRP2Q9NX02 1062 aa11.17□□□□□ -0.62
VPS53-214ENST00000572607 RGPD5Q99666 1765 aa11.16□□□□□ -0.62
VPS53-214ENST00000572607 FYB1O15117 783 aa11.16□□□□□ -0.62
VPS53-214ENST00000572607 PTF1AQ7RTS3 328 aa11.16□□□□□ -0.62
VPS53-214ENST00000572607 KLHL34Q8N239 644 aa11.16□□□□□ -0.62
VPS53-214ENST00000572607 IP6K1Q92551 441 aa11.16□□□□□ -0.62
VPS53-214ENST00000572607 ANO8Q9HCE9 1232 aaPredicted RBP11.16□□□□□ -0.62
VPS53-214ENST00000572607 CGNL1Q0VF96 1302 aa11.15□□□□□ -0.62
VPS53-214ENST00000572607 MAP3K19Q56UN5 1328 aa11.15□□□□□ -0.62
VPS53-214ENST00000572607 LTV1Q96GA3 475 aaPredicted RBP11.15□□□□□ -0.62
VPS53-214ENST00000572607 PDGFDQ9GZP0 370 aaPredicted RBP11.15□□□□□ -0.62
VPS53-214ENST00000572607 OVOS2A0A0G2JMS6 1433 aa11.15□□□□□ -0.62
VPS53-214ENST00000572607 RTL1A6NKG5 1358 aa11.15□□□□□ -0.63
VPS53-214ENST00000572607 EXOC5O00471 708 aa11.14□□□□□ -0.63
VPS53-214ENST00000572607 KCNQ2O43526 872 aa11.14□□□□□ -0.63
VPS53-214ENST00000572607 PLCG2P16885 1265 aa11.14□□□□□ -0.63
VPS53-214ENST00000572607 IRX5P78411 483 aaPredicted RBP11.14□□□□□ -0.63
VPS53-214ENST00000572607 GSE1Q14687 1217 aa11.14□□□□□ -0.63
VPS53-214ENST00000572607 CARD14Q9BXL6 1004 aa11.14□□□□□ -0.63
VPS53-214ENST00000572607 SMG6Q86US8 1419 aaKnown RBP11.13□□□□□ -0.63
VPS53-214ENST00000572607 IL2RBP14784 551 aa11.13□□□□□ -0.63
VPS53-214ENST00000572607 HOXC9P31274 260 aa11.13□□□□□ -0.63
VPS53-214ENST00000572607 RRS1Q15050 365 aaKnown RBP11.13□□□□□ -0.63
VPS53-214ENST00000572607 PCDHB8Q9UN66 801 aa11.13□□□□□ -0.63
VPS53-214ENST00000572607 CHD4Q14839 1912 aa11.13□□□□□ -0.63
VPS53-214ENST00000572607 LTN1O94822 1766 aa11.13□□□□□ -0.63
VPS53-214ENST00000572607 SPON1Q9HCB6 807 aa11.12□□□□□ -0.63
VPS53-214ENST00000572607 KIF20BQ96Q89 1820 aa11.12□□□□□ -0.63
VPS53-214ENST00000572607 FBLN1P23142 703 aa11.11□□□□□ -0.63
VPS53-214ENST00000572607 PANK3Q9H999 370 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms