RNA–Protein interactions for RNA: ENST00000558861.1

LRRC28-209, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 744 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-209ENST00000558861 DOLKQ9UPQ8 538 aa9.95□□□□□ -0.82
LRRC28-209ENST00000558861 MAP4K5Q9Y4K4 846 aa9.95□□□□□ -0.82
LRRC28-209ENST00000558861 SYNJ2O15056 1496 aa9.95□□□□□ -0.82
LRRC28-209ENST00000558861 ADAMTS12P58397 1594 aa9.95□□□□□ -0.82
LRRC28-209ENST00000558861 PBRM1Q86U86 1689 aa9.95□□□□□ -0.82
LRRC28-209ENST00000558861 FHAD1B1AJZ9 1412 aa9.94□□□□□ -0.82
LRRC28-209ENST00000558861 FSHRP23945 695 aa9.94□□□□□ -0.82
LRRC28-209ENST00000558861 OXLD1Q5BKU9 147 aa9.94□□□□□ -0.82
LRRC28-209ENST00000558861 INTS6LQ5JSJ4 861 aaKnown RBP9.94□□□□□ -0.82
LRRC28-209ENST00000558861 ZNF697Q5TEC3 545 aa9.94□□□□□ -0.82
LRRC28-209ENST00000558861 CDCA7Q9BWT1 371 aaPredicted RBP9.94□□□□□ -0.82
LRRC28-209ENST00000558861 PRKD2Q9BZL6 878 aa9.94□□□□□ -0.82
LRRC28-209ENST00000558861 SIAH2O43255 324 aa9.93□□□□□ -0.82
LRRC28-209ENST00000558861 MAP7D1Q3KQU3 841 aa9.93□□□□□ -0.82
LRRC28-209ENST00000558861 RNF20Q5VTR2 975 aa9.93□□□□□ -0.82
LRRC28-209ENST00000558861 CDK15Q96Q40 435 aa9.93□□□□□ -0.82
LRRC28-209ENST00000558861 VRTNQ9H8Y1 702 aa9.93□□□□□ -0.82
LRRC28-209ENST00000558861 PCDHB11Q9Y5F2 797 aa9.93□□□□□ -0.82
LRRC28-209ENST00000558861 SEPT12Q8IYM1 358 aa9.92□□□□□ -0.82
LRRC28-209ENST00000558861 MKRN1Q9UHC7 482 aaKnown RBP9.92□□□□□ -0.82
LRRC28-209ENST00000558861 ACIN1Q9UKV3 1341 aaKnown RBP9.91□□□□□ -0.82
LRRC28-209ENST00000558861 GRM5P41594 1212 aa9.91□□□□□ -0.82
LRRC28-209ENST00000558861 FOXC1Q12948 553 aa9.91□□□□□ -0.82
LRRC28-209ENST00000558861 EML3Q32P44 896 aa9.91□□□□□ -0.82
LRRC28-209ENST00000558861 ZNF598Q86UK7 904 aaKnown RBP9.91□□□□□ -0.82
LRRC28-209ENST00000558861 PRXQ9BXM0 1461 aa9.91□□□□□ -0.82
LRRC28-209ENST00000558861 ATG7O95352 703 aa9.9□□□□□ -0.82
LRRC28-209ENST00000558861 PKD2L1Q9P0L9 805 aa9.9□□□□□ -0.82
LRRC28-209ENST00000558861 GRIN2AQ12879 1464 aa9.9□□□□□ -0.83
LRRC28-209ENST00000558861 NUP160Q12769 1436 aa9.9□□□□□ -0.83
LRRC28-209ENST00000558861 CARMIL1Q5VZK9 1371 aa9.89□□□□□ -0.83
LRRC28-209ENST00000558861 ERVH48-1M5A8F1 160 aa9.89□□□□□ -0.83
LRRC28-209ENST00000558861 ADH1CP00326 375 aa9.89□□□□□ -0.83
LRRC28-209ENST00000558861 CRTC2Q53ET0 693 aaPredicted RBP9.89□□□□□ -0.83
LRRC28-209ENST00000558861 V9GY48 417 aaPredicted RBP9.89□□□□□ -0.83
LRRC28-209ENST00000558861 EEA1Q15075 1411 aa9.89□□□□□ -0.83
LRRC28-209ENST00000558861 CHD1O14646 1710 aa9.88□□□□□ -0.83
LRRC28-209ENST00000558861 CUL7Q14999 1698 aa9.88□□□□□ -0.83
LRRC28-209ENST00000558861 LZTS3O60299 673 aaPredicted RBP9.88□□□□□ -0.83
LRRC28-209ENST00000558861 MPNDQ8N594 471 aa9.88□□□□□ -0.83
LRRC28-209ENST00000558861 ZMIZ1Q9ULJ6 1067 aa9.88□□□□□ -0.83
LRRC28-209ENST00000558861 CLASP1Q7Z460 1538 aa9.87□□□□□ -0.83
LRRC28-209ENST00000558861 CARNS1A5YM72 827 aa9.87□□□□□ -0.83
LRRC28-209ENST00000558861 USP17L15C9J2P7 530 aa9.87□□□□□ -0.83
LRRC28-209ENST00000558861 USP17L10C9JJH3 530 aa9.87□□□□□ -0.83
LRRC28-209ENST00000558861 USP17L13C9JLJ4 530 aa9.87□□□□□ -0.83
LRRC28-209ENST00000558861 USP17L12C9JPN9 530 aa9.87□□□□□ -0.83
LRRC28-209ENST00000558861 USP17L11C9JVI0 530 aa9.87□□□□□ -0.83
LRRC28-209ENST00000558861 USP17L21D6R901 530 aa9.87□□□□□ -0.83
LRRC28-209ENST00000558861 USP17L18D6R9N7 530 aa9.87□□□□□ -0.83
LRRC28-209ENST00000558861 USP17L22D6RA61 530 aa9.87□□□□□ -0.83
LRRC28-209ENST00000558861 USP17L17D6RBQ6 530 aa9.87□□□□□ -0.83
LRRC28-209ENST00000558861 USP17L19D6RCP7 530 aa9.87□□□□□ -0.83
LRRC28-209ENST00000558861 USP17L20D6RJB6 530 aa9.87□□□□□ -0.83
LRRC28-209ENST00000558861 ATP5J2-PTCD1G3V325 749 aa9.87□□□□□ -0.83
LRRC28-209ENST00000558861 NR3C2P08235 984 aa9.87□□□□□ -0.83
LRRC28-209ENST00000558861 PDIA4P13667 645 aaKnown RBP9.87□□□□□ -0.83
LRRC28-209ENST00000558861 RASA1P20936 1047 aa9.87□□□□□ -0.83
LRRC28-209ENST00000558861 SCTRP47872 440 aa9.87□□□□□ -0.83
LRRC28-209ENST00000558861 CLDN10P78369 228 aa9.87□□□□□ -0.83
LRRC28-209ENST00000558861 USP17L24Q0WX57 530 aa9.87□□□□□ -0.83
LRRC28-209ENST00000558861 CHMP7Q8WUX9 453 aaPredicted RBP9.87□□□□□ -0.83
LRRC28-209ENST00000558861 TMPRSS4Q9NRS4 437 aa9.87□□□□□ -0.83
LRRC28-209ENST00000558861 NOD1Q9Y239 953 aa9.87□□□□□ -0.83
LRRC28-209ENST00000558861 FAM196BA6NMK8 535 aa9.86□□□□□ -0.83
LRRC28-209ENST00000558861 ALDH1A1P00352 501 aa9.86□□□□□ -0.83
LRRC28-209ENST00000558861 CSB-PGBD3P0DP91 1061 aa9.86□□□□□ -0.83
LRRC28-209ENST00000558861 OGFOD1Q8N543 542 aa9.86□□□□□ -0.83
LRRC28-209ENST00000558861 STK32AQ8WU08 396 aa9.86□□□□□ -0.83
LRRC28-209ENST00000558861 ZNF594Q96JF6 807 aaPredicted RBP9.86□□□□□ -0.83
LRRC28-209ENST00000558861 CEP170Q5SW79 1584 aa9.85□□□□□ -0.83
LRRC28-209ENST00000558861 TNFRSF10AO00220 468 aa9.85□□□□□ -0.83
LRRC28-209ENST00000558861 GTF2IP78347 998 aa9.85□□□□□ -0.83
LRRC28-209ENST00000558861 PTK7Q13308 1070 aa9.85□□□□□ -0.83
LRRC28-209ENST00000558861 CCDC125Q86Z20 511 aa9.85□□□□□ -0.83
LRRC28-209ENST00000558861 CCDC116Q8IYX3 515 aa9.85□□□□□ -0.83
LRRC28-209ENST00000558861 CYLDQ9NQC7 956 aa9.85□□□□□ -0.83
LRRC28-209ENST00000558861 NOVA2Q9UNW9 492 aaKnown RBP9.85□□□□□ -0.83
LRRC28-209ENST00000558861 KIAA1024Q9UPX6 916 aa9.85□□□□□ -0.83
LRRC28-209ENST00000558861 NR5A1Q13285 461 aa9.84□□□□□ -0.83
LRRC28-209ENST00000558861 LARP1Q6PKG0 1096 aaKnown RBP9.84□□□□□ -0.83
LRRC28-209ENST00000558861 TRIM50Q86XT4 487 aa9.84□□□□□ -0.83
LRRC28-209ENST00000558861 RAPGEF2Q9Y4G8 1499 aa9.84□□□□□ -0.83
LRRC28-209ENST00000558861 GDF9O60383 454 aa9.83□□□□□ -0.84
LRRC28-209ENST00000558861 USP4Q13107 963 aa9.83□□□□□ -0.84
LRRC28-209ENST00000558861 ELOAQ14241 798 aaKnown RBP9.83□□□□□ -0.84
LRRC28-209ENST00000558861 PPP1R26Q5T8A7 1209 aaPredicted RBP9.83□□□□□ -0.84
LRRC28-209ENST00000558861 ZNF784Q8NCA9 323 aaPredicted RBP9.83□□□□□ -0.84
LRRC28-209ENST00000558861 TRAIPQ9BWF2 469 aa9.83□□□□□ -0.84
LRRC28-209ENST00000558861 DNAAF2Q9NVR5 837 aaKnown RBP9.83□□□□□ -0.84
LRRC28-209ENST00000558861 USTQ9Y2C2 406 aa9.83□□□□□ -0.84
LRRC28-209ENST00000558861 TMEM88BA6NKF7 163 aa9.82□□□□□ -0.84
LRRC28-209ENST00000558861 ATP1A2P50993 1020 aa9.82□□□□□ -0.84
LRRC28-209ENST00000558861 ERVK-9P63128 1117 aa9.82□□□□□ -0.84
LRRC28-209ENST00000558861 DHX9Q08211 1270 aaKnown RBP9.82□□□□□ -0.84
LRRC28-209ENST00000558861 TMEM164Q5U3C3 297 aa9.82□□□□□ -0.84
LRRC28-209ENST00000558861 SNIP1Q8TAD8 396 aaKnown RBP9.82□□□□□ -0.84
LRRC28-209ENST00000558861 PCDHGA11Q9Y5H2 935 aa9.82□□□□□ -0.84
LRRC28-209ENST00000558861 MYCP01106 439 aaPredicted RBP9.81□□□□□ -0.84
LRRC28-209ENST00000558861 PSME1Q06323 249 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms