RNA–Protein interactions for RNA: ENST00000556992.1

SRP54-212, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 529 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-212ENST00000556992 RFC5P40937 340 aa7.72□□□□□ -1.17
SRP54-212ENST00000556992 LYSMD3Q7Z3D4 306 aa7.72□□□□□ -1.17
SRP54-212ENST00000556992 DDRGK1Q96HY6 314 aa7.72□□□□□ -1.17
SRP54-212ENST00000556992 TRIM34Q9BYJ4 488 aa7.72□□□□□ -1.17
SRP54-212ENST00000556992 ESPNB1AK53 854 aa7.71□□□□□ -1.18
SRP54-212ENST00000556992 RNF225M0QZC1 329 aaPredicted RBP7.71□□□□□ -1.18
SRP54-212ENST00000556992 MARSP56192 900 aaKnown RBP7.71□□□□□ -1.18
SRP54-212ENST00000556992 SUPT5HO00267 1087 aaKnown RBP7.7□□□□□ -1.18
SRP54-212ENST00000556992 GIGYF1O75420 1035 aaPredicted RBP7.7□□□□□ -1.18
SRP54-212ENST00000556992 MEN1O00255 615 aa7.69□□□□□ -1.18
SRP54-212ENST00000556992 ZNF837Q96EG3 531 aaPredicted RBP7.69□□□□□ -1.18
SRP54-212ENST00000556992 PCDHB9Q9Y5E1 797 aa7.69□□□□□ -1.18
SRP54-212ENST00000556992 CELA2BP08218 269 aaPredicted RBP7.68□□□□□ -1.18
SRP54-212ENST00000556992 RIPOR1Q6ZS17 1223 aa7.68□□□□□ -1.18
SRP54-212ENST00000556992 NACADO15069 1562 aa7.67□□□□□ -1.18
SRP54-212ENST00000556992 ATP5J2-PTCD1G3V325 749 aa7.67□□□□□ -1.18
SRP54-212ENST00000556992 SRSF11Q05519 484 aaKnown RBP7.67□□□□□ -1.18
SRP54-212ENST00000556992 DBN1Q16643 649 aa7.67□□□□□ -1.18
SRP54-212ENST00000556992 FBXO45P0C2W1 286 aa7.66□□□□□ -1.18
SRP54-212ENST00000556992 RNF144AP50876 292 aaPredicted RBP7.66□□□□□ -1.18
SRP54-212ENST00000556992 PNMA1Q8ND90 353 aa7.66□□□□□ -1.18
SRP54-212ENST00000556992 GAS2L1Q99501 681 aaPredicted RBP7.66□□□□□ -1.18
SRP54-212ENST00000556992 A0A1W2PRU2 124 aa7.65□□□□□ -1.18
SRP54-212ENST00000556992 SCTRP47872 440 aa7.65□□□□□ -1.18
SRP54-212ENST00000556992 MAP3K10Q02779 954 aa7.65□□□□□ -1.18
SRP54-212ENST00000556992 POU4F2Q12837 409 aa7.65□□□□□ -1.18
SRP54-212ENST00000556992 CNTNAP5Q8WYK1 1306 aa7.65□□□□□ -1.18
SRP54-212ENST00000556992 DNMT3AQ9Y6K1 912 aaPredicted RBP7.65□□□□□ -1.18
SRP54-212ENST00000556992 ZBBXA8MT70 800 aa7.64□□□□□ -1.19
SRP54-212ENST00000556992 GTPBP3Q969Y2 492 aaKnown RBP7.64□□□□□ -1.19
SRP54-212ENST00000556992 GJD4Q96KN9 370 aaPredicted RBP7.64□□□□□ -1.19
SRP54-212ENST00000556992 IGF1RP08069 1367 aa7.63□□□□□ -1.19
SRP54-212ENST00000556992 TRIM22Q8IYM9 498 aa7.63□□□□□ -1.19
SRP54-212ENST00000556992 SCARF2Q96GP6 870 aaPredicted RBP7.63□□□□□ -1.19
SRP54-212ENST00000556992 SLC27A3Q5K4L6 730 aa7.62□□□□□ -1.19
SRP54-212ENST00000556992 SEPT12Q8IYM1 358 aa7.62□□□□□ -1.19
SRP54-212ENST00000556992 RAB6BQ9NRW1 208 aa7.62□□□□□ -1.19
SRP54-212ENST00000556992 MBIPQ9NS73 344 aa7.62□□□□□ -1.19
SRP54-212ENST00000556992 ERVK-9P63128 1117 aa7.61□□□□□ -1.19
SRP54-212ENST00000556992 CC2D2BQ6DHV5 1058 aa7.61□□□□□ -1.19
SRP54-212ENST00000556992 KANK3Q6NY19 840 aa7.61□□□□□ -1.19
SRP54-212ENST00000556992 ARHGEF10LQ9HCE6 1279 aa7.61□□□□□ -1.19
SRP54-212ENST00000556992 ACDQ96AP0 544 aa7.6□□□□□ -1.19
SRP54-212ENST00000556992 PCMTD1Q96MG8 357 aaPredicted RBP7.6□□□□□ -1.19
SRP54-212ENST00000556992 NBPF10Q6P3W6 841 aaKnown RBP7.59□□□□□ -1.19
SRP54-212ENST00000556992 NBPF15Q8N660 670 aa7.59□□□□□ -1.19
SRP54-212ENST00000556992 IL27Q8NEV9 243 aa7.59□□□□□ -1.19
SRP54-212ENST00000556992 NEDD1Q8NHV4 660 aa7.59□□□□□ -1.19
SRP54-212ENST00000556992 NLRP3Q96P20 1036 aa7.59□□□□□ -1.19
SRP54-212ENST00000556992 PCDHB11Q9Y5F2 797 aa7.59□□□□□ -1.19
SRP54-212ENST00000556992 ITGB2P05107 769 aa7.58□□□□□ -1.2
SRP54-212ENST00000556992 PLA2G4EQ3MJ16 856 aa7.58□□□□□ -1.2
SRP54-212ENST00000556992 GRIP2Q9C0E4 1043 aa7.58□□□□□ -1.2
SRP54-212ENST00000556992 OSBPL3Q9H4L5 887 aa7.58□□□□□ -1.2
SRP54-212ENST00000556992 DYRK1BQ9Y463 629 aa7.58□□□□□ -1.2
SRP54-212ENST00000556992 THBS1P07996 1170 aa7.57□□□□□ -1.2
SRP54-212ENST00000556992 BCRP11274 1271 aa7.57□□□□□ -1.2
SRP54-212ENST00000556992 GPC1P35052 558 aa7.57□□□□□ -1.2
SRP54-212ENST00000556992 PHKA2P46019 1235 aa7.57□□□□□ -1.2
SRP54-212ENST00000556992 TMEM259Q4ZIN3 620 aa7.57□□□□□ -1.2
SRP54-212ENST00000556992 FOXR1Q6PIV2 292 aa7.57□□□□□ -1.2
SRP54-212ENST00000556992 DCAF5Q96JK2 942 aa7.57□□□□□ -1.2
SRP54-212ENST00000556992 GPAMQ9HCL2 828 aa7.57□□□□□ -1.2
SRP54-212ENST00000556992 TIMMDC1Q9NPL8 285 aa7.57□□□□□ -1.2
SRP54-212ENST00000556992 ENAMQ9NRM1 1142 aa7.57□□□□□ -1.2
SRP54-212ENST00000556992 RB1CC1Q8TDY2 1594 aa7.57□□□□□ -1.2
SRP54-212ENST00000556992 GPR37L1O60883 481 aa7.56□□□□□ -1.2
SRP54-212ENST00000556992 MX2P20592 715 aa7.56□□□□□ -1.2
SRP54-212ENST00000556992 CLN3Q13286 438 aa7.56□□□□□ -1.2
SRP54-212ENST00000556992 CYP2U1Q7Z449 544 aa7.56□□□□□ -1.2
SRP54-212ENST00000556992 TRERF1Q96PN7 1200 aa7.55□□□□□ -1.2
SRP54-212ENST00000556992 NUCKS1Q9H1E3 243 aaKnown RBP7.55□□□□□ -1.2
SRP54-212ENST00000556992 H7C1W4 665 aa7.54□□□□□ -1.2
SRP54-212ENST00000556992 WASLO00401 505 aaPredicted RBP7.54□□□□□ -1.2
SRP54-212ENST00000556992 STAU1O95793 577 aaKnown RBP7.54□□□□□ -1.2
SRP54-212ENST00000556992 IGHA1P01876 353 aa7.54□□□□□ -1.2
SRP54-212ENST00000556992 SNRPNP63162 240 aaKnown RBP7.54□□□□□ -1.2
SRP54-212ENST00000556992 NR1H3Q13133 447 aa7.54□□□□□ -1.2
SRP54-212ENST00000556992 NEUROD2Q15784 382 aa7.54□□□□□ -1.2
SRP54-212ENST00000556992 CDCA7Q9BWT1 371 aaPredicted RBP7.54□□□□□ -1.2
SRP54-212ENST00000556992 TRAK2O60296 914 aa7.53□□□□□ -1.2
SRP54-212ENST00000556992 IL2RAP01589 272 aa7.53□□□□□ -1.2
SRP54-212ENST00000556992 FOXK2Q01167 660 aa7.53□□□□□ -1.2
SRP54-212ENST00000556992 RNF20Q5VTR2 975 aa7.53□□□□□ -1.2
SRP54-212ENST00000556992 TAS1R3Q7RTX0 852 aa7.53□□□□□ -1.2
SRP54-212ENST00000556992 GMCL1Q96IK5 515 aa7.53□□□□□ -1.2
SRP54-212ENST00000556992 SPOCK3Q9BQ16 436 aa7.53□□□□□ -1.2
SRP54-212ENST00000556992 PHF20L1A8MW92 1017 aa7.52□□□□□ -1.21
SRP54-212ENST00000556992 SPATA31C2B4DYI2 1134 aa7.52□□□□□ -1.21
SRP54-212ENST00000556992 SHISA8B8ZZ34 492 aa7.52□□□□□ -1.21
SRP54-212ENST00000556992 MSTNO14793 375 aa7.52□□□□□ -1.21
SRP54-212ENST00000556992 C1orf229Q6ZS94 237 aaPredicted RBP7.52□□□□□ -1.21
SRP54-212ENST00000556992 PODNQ7Z5L7 613 aa7.52□□□□□ -1.21
SRP54-212ENST00000556992 BEND7Q8N7W2 519 aaPredicted RBP7.52□□□□□ -1.21
SRP54-212ENST00000556992 MTMR14Q8NCE2 650 aa7.52□□□□□ -1.21
SRP54-212ENST00000556992 CNKSR1Q969H4 720 aa7.52□□□□□ -1.21
SRP54-212ENST00000556992 CCDC85AQ96PX6 553 aaPredicted RBP7.52□□□□□ -1.21
SRP54-212ENST00000556992 F11P03951 625 aa7.51□□□□□ -1.21
SRP54-212ENST00000556992 PROCP04070 461 aa7.51□□□□□ -1.21
SRP54-212ENST00000556992 CENPCQ03188 943 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms