RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 SRSF11Q05519 484 aaKnown RBP9.59□□□□□ -0.87
SCFD1-216ENST00000555550 GPR25O00155 361 aa9.58□□□□□ -0.88
SCFD1-216ENST00000555550 GIGYF1O75420 1035 aaPredicted RBP9.58□□□□□ -0.88
SCFD1-216ENST00000555550 CELA2BP08218 269 aaPredicted RBP9.58□□□□□ -0.88
SCFD1-216ENST00000555550 MEN1O00255 615 aa9.57□□□□□ -0.88
SCFD1-216ENST00000555550 RNF144AP50876 292 aaPredicted RBP9.57□□□□□ -0.88
SCFD1-216ENST00000555550 TRIM34Q9BYJ4 488 aa9.57□□□□□ -0.88
SCFD1-216ENST00000555550 MAP3K10Q02779 954 aa9.56□□□□□ -0.88
SCFD1-216ENST00000555550 DBN1Q16643 649 aa9.56□□□□□ -0.88
SCFD1-216ENST00000555550 RIPOR1Q6ZS17 1223 aa9.56□□□□□ -0.88
SCFD1-216ENST00000555550 SCARF2Q96GP6 870 aaPredicted RBP9.56□□□□□ -0.88
SCFD1-216ENST00000555550 DNMT3AQ9Y6K1 912 aaPredicted RBP9.56□□□□□ -0.88
SCFD1-216ENST00000555550 ATP5J2-PTCD1G3V325 749 aa9.55□□□□□ -0.88
SCFD1-216ENST00000555550 ZNF837Q96EG3 531 aaPredicted RBP9.55□□□□□ -0.88
SCFD1-216ENST00000555550 PCDHB9Q9Y5E1 797 aa9.55□□□□□ -0.88
SCFD1-216ENST00000555550 A0A1W2PRU2 124 aa9.54□□□□□ -0.88
SCFD1-216ENST00000555550 KANK3Q6NY19 840 aa9.54□□□□□ -0.88
SCFD1-216ENST00000555550 SEPT12Q8IYM1 358 aa9.54□□□□□ -0.88
SCFD1-216ENST00000555550 POU4F2Q12837 409 aa9.53□□□□□ -0.88
SCFD1-216ENST00000555550 TRIM22Q8IYM9 498 aa9.53□□□□□ -0.88
SCFD1-216ENST00000555550 GAS2L1Q99501 681 aaPredicted RBP9.53□□□□□ -0.88
SCFD1-216ENST00000555550 CNTNAP5Q8WYK1 1306 aa9.53□□□□□ -0.88
SCFD1-216ENST00000555550 ZBBXA8MT70 800 aa9.51□□□□□ -0.89
SCFD1-216ENST00000555550 FBXO45P0C2W1 286 aa9.51□□□□□ -0.89
SCFD1-216ENST00000555550 GTPBP3Q969Y2 492 aaKnown RBP9.51□□□□□ -0.89
SCFD1-216ENST00000555550 ENAMQ9NRM1 1142 aa9.51□□□□□ -0.89
SCFD1-216ENST00000555550 MBIPQ9NS73 344 aa9.51□□□□□ -0.89
SCFD1-216ENST00000555550 IGF1RP08069 1367 aa9.5□□□□□ -0.89
SCFD1-216ENST00000555550 SLC27A3Q5K4L6 730 aa9.5□□□□□ -0.89
SCFD1-216ENST00000555550 FOXR1Q6PIV2 292 aa9.5□□□□□ -0.89
SCFD1-216ENST00000555550 IGHA1P01876 353 aa9.49□□□□□ -0.89
SCFD1-216ENST00000555550 DYRK1BQ9Y463 629 aa9.49□□□□□ -0.89
SCFD1-216ENST00000555550 GPC1P35052 558 aa9.48□□□□□ -0.89
SCFD1-216ENST00000555550 GMCL1Q96IK5 515 aa9.48□□□□□ -0.89
SCFD1-216ENST00000555550 NLRP3Q96P20 1036 aa9.48□□□□□ -0.89
SCFD1-216ENST00000555550 SCTRP47872 440 aa9.47□□□□□ -0.89
SCFD1-216ENST00000555550 ERVK-9P63128 1117 aa9.47□□□□□ -0.89
SCFD1-216ENST00000555550 FOXK2Q01167 660 aa9.47□□□□□ -0.89
SCFD1-216ENST00000555550 TMEM259Q4ZIN3 620 aa9.47□□□□□ -0.89
SCFD1-216ENST00000555550 CC2D2BQ6DHV5 1058 aa9.47□□□□□ -0.89
SCFD1-216ENST00000555550 NEDD1Q8NHV4 660 aa9.47□□□□□ -0.89
SCFD1-216ENST00000555550 ACDQ96AP0 544 aa9.47□□□□□ -0.89
SCFD1-216ENST00000555550 GJD4Q96KN9 370 aaPredicted RBP9.47□□□□□ -0.89
SCFD1-216ENST00000555550 GRIP2Q9C0E4 1043 aa9.47□□□□□ -0.89
SCFD1-216ENST00000555550 BCRP11274 1271 aa9.46□□□□□ -0.9
SCFD1-216ENST00000555550 PCMTD1Q96MG8 357 aaPredicted RBP9.46□□□□□ -0.9
SCFD1-216ENST00000555550 H7C1W4 665 aa9.45□□□□□ -0.9
SCFD1-216ENST00000555550 NBPF10Q6P3W6 841 aaKnown RBP9.45□□□□□ -0.9
SCFD1-216ENST00000555550 NBPF15Q8N660 670 aa9.45□□□□□ -0.9
SCFD1-216ENST00000555550 BEND7Q8N7W2 519 aaPredicted RBP9.45□□□□□ -0.9
SCFD1-216ENST00000555550 TRIM52Q96A61 297 aa9.45□□□□□ -0.9
SCFD1-216ENST00000555550 DCAF5Q96JK2 942 aa9.45□□□□□ -0.9
SCFD1-216ENST00000555550 PLA2G4EQ3MJ16 856 aa9.44□□□□□ -0.9
SCFD1-216ENST00000555550 MX2P20592 715 aa9.43□□□□□ -0.9
SCFD1-216ENST00000555550 CLN3Q13286 438 aa9.43□□□□□ -0.9
SCFD1-216ENST00000555550 RNF20Q5VTR2 975 aa9.43□□□□□ -0.9
SCFD1-216ENST00000555550 IL27Q8NEV9 243 aa9.43□□□□□ -0.9
SCFD1-216ENST00000555550 TRERF1Q96PN7 1200 aa9.43□□□□□ -0.9
SCFD1-216ENST00000555550 ARHGEF10LQ9HCE6 1279 aa9.43□□□□□ -0.9
SCFD1-216ENST00000555550 TIMMDC1Q9NPL8 285 aa9.43□□□□□ -0.9
SCFD1-216ENST00000555550 RAB6BQ9NRW1 208 aa9.43□□□□□ -0.9
SCFD1-216ENST00000555550 PCDHB11Q9Y5F2 797 aa9.43□□□□□ -0.9
SCFD1-216ENST00000555550 PHF20L1A8MW92 1017 aa9.42□□□□□ -0.9
SCFD1-216ENST00000555550 OSBPL3Q9H4L5 887 aa9.42□□□□□ -0.9
SCFD1-216ENST00000555550 MSTNO14793 375 aa9.41□□□□□ -0.9
SCFD1-216ENST00000555550 ITGB2P05107 769 aa9.41□□□□□ -0.9
SCFD1-216ENST00000555550 CYP2U1Q7Z449 544 aa9.41□□□□□ -0.9
SCFD1-216ENST00000555550 NUCKS1Q9H1E3 243 aaKnown RBP9.41□□□□□ -0.9
SCFD1-216ENST00000555550 GOPCQ9HD26 462 aa9.41□□□□□ -0.9
SCFD1-216ENST00000555550 SPATA31C2B4DYI2 1134 aa9.4□□□□□ -0.9
SCFD1-216ENST00000555550 TRAK2O60296 914 aa9.4□□□□□ -0.9
SCFD1-216ENST00000555550 F11P03951 625 aa9.4□□□□□ -0.9
SCFD1-216ENST00000555550 NR1H3Q13133 447 aa9.4□□□□□ -0.9
SCFD1-216ENST00000555550 PODNQ7Z5L7 613 aa9.4□□□□□ -0.9
SCFD1-216ENST00000555550 CCDC125Q86Z20 511 aa9.4□□□□□ -0.9
SCFD1-216ENST00000555550 BCANQ96GW7 911 aa9.4□□□□□ -0.9
SCFD1-216ENST00000555550 SPOCK3Q9BQ16 436 aa9.4□□□□□ -0.9
SCFD1-216ENST00000555550 ESF1Q9H501 851 aaKnown RBP9.4□□□□□ -0.9
SCFD1-216ENST00000555550 WASLO00401 505 aaPredicted RBP9.39□□□□□ -0.91
SCFD1-216ENST00000555550 PHKA2P46019 1235 aa9.39□□□□□ -0.91
SCFD1-216ENST00000555550 TAS1R3Q7RTX0 852 aa9.39□□□□□ -0.91
SCFD1-216ENST00000555550 CNKSR1Q969H4 720 aa9.38□□□□□ -0.91
SCFD1-216ENST00000555550 GPAMQ9HCL2 828 aa9.38□□□□□ -0.91
SCFD1-216ENST00000555550 OIP5O43482 229 aa9.37□□□□□ -0.91
SCFD1-216ENST00000555550 THBS1P07996 1170 aa9.37□□□□□ -0.91
SCFD1-216ENST00000555550 SNRPNP63162 240 aaKnown RBP9.37□□□□□ -0.91
SCFD1-216ENST00000555550 CENPCQ03188 943 aa9.37□□□□□ -0.91
SCFD1-216ENST00000555550 WDR44Q5JSH3 913 aa9.37□□□□□ -0.91
SCFD1-216ENST00000555550 NSFL1CQ9UNZ2 370 aaKnown RBP9.37□□□□□ -0.91
SCFD1-216ENST00000555550 CDCA7Q9BWT1 371 aaPredicted RBP9.36□□□□□ -0.91
SCFD1-216ENST00000555550 IL2RAP01589 272 aa9.35□□□□□ -0.91
SCFD1-216ENST00000555550 MCCD1P59942 119 aaPredicted RBP9.35□□□□□ -0.91
SCFD1-216ENST00000555550 C1orf229Q6ZS94 237 aaPredicted RBP9.35□□□□□ -0.91
SCFD1-216ENST00000555550 ESYT1Q9BSJ8 1104 aa9.35□□□□□ -0.91
SCFD1-216ENST00000555550 OXCT2Q9BYC2 517 aaPredicted RBP9.35□□□□□ -0.91
SCFD1-216ENST00000555550 GPR37L1O60883 481 aa9.34□□□□□ -0.91
SCFD1-216ENST00000555550 ADAM23O75077 832 aa9.34□□□□□ -0.91
SCFD1-216ENST00000555550 GALNT6Q8NCL4 622 aa9.34□□□□□ -0.91
SCFD1-216ENST00000555550 SHISA8B8ZZ34 492 aa9.33□□□□□ -0.92
SCFD1-216ENST00000555550 GNRH1P01148 92 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms