RNA–Protein interactions for RNA: ENST00000550629.1

SCAF11-213, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 579 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-213ENST00000550629 ZFAND3Q9H8U3 227 aa9.27□□□□□ -0.93
SCAF11-213ENST00000550629 SOBPA7XYQ1 873 aa9.26□□□□□ -0.93
SCAF11-213ENST00000550629 MAN1A2O60476 641 aa9.26□□□□□ -0.93
SCAF11-213ENST00000550629 UPP2O95045 317 aa9.26□□□□□ -0.93
SCAF11-213ENST00000550629 NR3C2P08235 984 aa9.26□□□□□ -0.93
SCAF11-213ENST00000550629 C6orf118Q5T5N4 469 aa9.26□□□□□ -0.93
SCAF11-213ENST00000550629 KCTD17Q8N5Z5 321 aa9.26□□□□□ -0.93
SCAF11-213ENST00000550629 BANK1Q8NDB2 785 aa9.26□□□□□ -0.93
SCAF11-213ENST00000550629 GJD4Q96KN9 370 aaPredicted RBP9.26□□□□□ -0.93
SCAF11-213ENST00000550629 OCSTAMPQ9BR26 566 aa9.26□□□□□ -0.93
SCAF11-213ENST00000550629 KLF16Q9BXK1 252 aaPredicted RBP9.26□□□□□ -0.93
SCAF11-213ENST00000550629 IQGAP2Q13576 1575 aa9.25□□□□□ -0.93
SCAF11-213ENST00000550629 ERFEQ4G0M1 354 aa9.25□□□□□ -0.93
SCAF11-213ENST00000550629 TRMT44Q8IYL2 757 aaKnown RBP9.25□□□□□ -0.93
SCAF11-213ENST00000550629 PNMA1Q8ND90 353 aa9.25□□□□□ -0.93
SCAF11-213ENST00000550629 ITPKCQ96DU7 683 aa9.25□□□□□ -0.93
SCAF11-213ENST00000550629 CTTNBP2Q8WZ74 1663 aa9.25□□□□□ -0.93
SCAF11-213ENST00000550629 TNIKQ9UKE5 1360 aa9.24□□□□□ -0.93
SCAF11-213ENST00000550629 GRM5P41594 1212 aa9.24□□□□□ -0.93
SCAF11-213ENST00000550629 PTK2Q05397 1052 aa9.24□□□□□ -0.93
SCAF11-213ENST00000550629 ZBTB33Q86T24 672 aa9.24□□□□□ -0.93
SCAF11-213ENST00000550629 SNRKQ9NRH2 765 aa9.24□□□□□ -0.93
SCAF11-213ENST00000550629 SHROOM2Q13796 1616 aa9.23□□□□□ -0.93
SCAF11-213ENST00000550629 UGGT2Q9NYU1 1516 aa9.23□□□□□ -0.93
SCAF11-213ENST00000550629 BMP2P12643 396 aa9.23□□□□□ -0.93
SCAF11-213ENST00000550629 UBTFP17480 764 aaKnown RBP9.23□□□□□ -0.93
SCAF11-213ENST00000550629 FSHRP23945 695 aa9.23□□□□□ -0.93
SCAF11-213ENST00000550629 VASH1Q7L8A9 365 aaPredicted RBP9.23□□□□□ -0.93
SCAF11-213ENST00000550629 GPSM3Q9Y4H4 160 aa9.23□□□□□ -0.93
SCAF11-213ENST00000550629 LINC00528Q8N1L1 170 aa9.22□□□□□ -0.93
SCAF11-213ENST00000550629 MTMR14Q8NCE2 650 aa9.22□□□□□ -0.93
SCAF11-213ENST00000550629 MAP4K5Q9Y4K4 846 aa9.22□□□□□ -0.93
SCAF11-213ENST00000550629 ADAM32Q8TC27 787 aa9.21□□□□□ -0.94
SCAF11-213ENST00000550629 MEIOBQ8N635 442 aa9.2□□□□□ -0.94
SCAF11-213ENST00000550629 CARMIL2Q6F5E8 1435 aa9.2□□□□□ -0.94
SCAF11-213ENST00000550629 EFCAB5A4FU69 1503 aa9.2□□□□□ -0.94
SCAF11-213ENST00000550629 SOCS7O14512 581 aa9.19□□□□□ -0.94
SCAF11-213ENST00000550629 VSIG8P0DPA2 414 aa9.19□□□□□ -0.94
SCAF11-213ENST00000550629 SLC10A4Q96EP9 437 aa9.19□□□□□ -0.94
SCAF11-213ENST00000550629 PRG4Q92954 1404 aaPredicted RBP9.18□□□□□ -0.94
SCAF11-213ENST00000550629 SAMD9Q5K651 1589 aa9.17□□□□□ -0.94
SCAF11-213ENST00000550629 DISP1Q96F81 1524 aa9.17□□□□□ -0.94
SCAF11-213ENST00000550629 LOC105371045A0A1W2PR82 267 aa9.17□□□□□ -0.94
SCAF11-213ENST00000550629 GPR37L1O60883 481 aa9.17□□□□□ -0.94
SCAF11-213ENST00000550629 EMILIN1Q9Y6C2 1016 aa9.17□□□□□ -0.94
SCAF11-213ENST00000550629 ZBBXA8MT70 800 aa9.16□□□□□ -0.94
SCAF11-213ENST00000550629 CCDC116Q8IYX3 515 aa9.16□□□□□ -0.94
SCAF11-213ENST00000550629 KCTD15Q96SI1 283 aaPredicted RBP9.16□□□□□ -0.94
SCAF11-213ENST00000550629 CDV3Q9UKY7 258 aaKnown RBP9.16□□□□□ -0.94
SCAF11-213ENST00000550629 NDUFB9Q9Y6M9 179 aa9.16□□□□□ -0.94
SCAF11-213ENST00000550629 CLIP1P30622 1438 aa9.15□□□□□ -0.94
SCAF11-213ENST00000550629 FBXO45P0C2W1 286 aa9.15□□□□□ -0.94
SCAF11-213ENST00000550629 GSK3AP49840 483 aa9.15□□□□□ -0.94
SCAF11-213ENST00000550629 TSEN34Q9BSV6 310 aaKnown RBP9.15□□□□□ -0.94
SCAF11-213ENST00000550629 KIAA0556O60303 1618 aa9.15□□□□□ -0.94
SCAF11-213ENST00000550629 ARHGEF11O15085 1522 aa9.15□□□□□ -0.95
SCAF11-213ENST00000550629 CEP162Q5TB80 1403 aa9.14□□□□□ -0.95
SCAF11-213ENST00000550629 SOS2Q07890 1332 aaPredicted RBP9.14□□□□□ -0.95
SCAF11-213ENST00000550629 APBB1O00213 710 aa9.14□□□□□ -0.95
SCAF11-213ENST00000550629 PPFIA3O75145 1194 aa9.14□□□□□ -0.95
SCAF11-213ENST00000550629 DZIP3Q86Y13 1208 aaKnown RBP9.14□□□□□ -0.95
SCAF11-213ENST00000550629 DNMT3LQ9UJW3 386 aa9.14□□□□□ -0.95
SCAF11-213ENST00000550629 PGPEP1Q9NXJ5 209 aa9.13□□□□□ -0.95
SCAF11-213ENST00000550629 ARHGAP35Q9NRY4 1499 aa9.13□□□□□ -0.95
SCAF11-213ENST00000550629 INTS6LQ5JSJ4 861 aaKnown RBP9.12□□□□□ -0.95
SCAF11-213ENST00000550629 XP32Q5T750 250 aa9.12□□□□□ -0.95
SCAF11-213ENST00000550629 PPP1R26Q5T8A7 1209 aaPredicted RBP9.12□□□□□ -0.95
SCAF11-213ENST00000550629 TBC1D2BQ9UPU7 963 aa9.12□□□□□ -0.95
SCAF11-213ENST00000550629 ERCC6L2Q5T890 1561 aa9.12□□□□□ -0.95
SCAF11-213ENST00000550629 TTLL8A6PVC2 850 aa9.11□□□□□ -0.95
SCAF11-213ENST00000550629 NR1H3Q13133 447 aa9.11□□□□□ -0.95
SCAF11-213ENST00000550629 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.11□□□□□ -0.95
SCAF11-213ENST00000550629 NBPF20Q3BBV1 942 aa9.11□□□□□ -0.95
SCAF11-213ENST00000550629 RIMBP3CA6NJZ7 1639 aa9.11□□□□□ -0.95
SCAF11-213ENST00000550629 RIMBP3BA6NNM3 1639 aa9.11□□□□□ -0.95
SCAF11-213ENST00000550629 RIMBP3Q9UFD9 1639 aa9.11□□□□□ -0.95
SCAF11-213ENST00000550629 PTPRGP23470 1445 aa9.11□□□□□ -0.95
SCAF11-213ENST00000550629 KCNMA1Q12791 1236 aa9.1□□□□□ -0.95
SCAF11-213ENST00000550629 PCDHB9Q9Y5E1 797 aa9.1□□□□□ -0.95
SCAF11-213ENST00000550629 FMN1Q68DA7 1419 aa9.1□□□□□ -0.95
SCAF11-213ENST00000550629 ARAP1Q96P48 1450 aa9.09□□□□□ -0.95
SCAF11-213ENST00000550629 ESPNB1AK53 854 aa9.09□□□□□ -0.95
SCAF11-213ENST00000550629 RAB15P59190 212 aa9.09□□□□□ -0.95
SCAF11-213ENST00000550629 FHOD3Q2V2M9 1422 aa9.08□□□□□ -0.96
SCAF11-213ENST00000550629 RANGAP1P46060 587 aaPredicted RBP9.08□□□□□ -0.96
SCAF11-213ENST00000550629 DHX9Q08211 1270 aaKnown RBP9.08□□□□□ -0.96
SCAF11-213ENST00000550629 MCM6Q14566 821 aa9.08□□□□□ -0.96
SCAF11-213ENST00000550629 TMEM132AQ24JP5 1023 aa9.08□□□□□ -0.96
SCAF11-213ENST00000550629 KRTAP4-8Q9BYQ9 185 aa9.08□□□□□ -0.96
SCAF11-213ENST00000550629 PRM3Q9NNZ6 103 aa9.08□□□□□ -0.96
SCAF11-213ENST00000550629 CBLBQ13191 982 aa9.07□□□□□ -0.96
SCAF11-213ENST00000550629 TMPRSS4Q9NRS4 437 aa9.07□□□□□ -0.96
SCAF11-213ENST00000550629 UHRF1BP1LA0JNW5 1464 aa9.07□□□□□ -0.96
SCAF11-213ENST00000550629 ERVH48-1M5A8F1 160 aa9.06□□□□□ -0.96
SCAF11-213ENST00000550629 GIGYF1O75420 1035 aaPredicted RBP9.06□□□□□ -0.96
SCAF11-213ENST00000550629 PTSQ03393 145 aa9.06□□□□□ -0.96
SCAF11-213ENST00000550629 IRF5Q13568 498 aa9.06□□□□□ -0.96
SCAF11-213ENST00000550629 GDPD2Q9HCC8 539 aa9.06□□□□□ -0.96
SCAF11-213ENST00000550629 UACAQ9BZF9 1416 aa9.05□□□□□ -0.96
SCAF11-213ENST00000550629 ABCA8O94911 1581 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms