RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 SPATA31A1Q5TZJ5 1347 aa11.01□□□□□ -0.65
NEK3-201ENST00000550331 CENPJQ9HC77 1338 aaPredicted RBP11.01□□□□□ -0.65
NEK3-201ENST00000550331 BRD4O60885 1362 aaPredicted RBP11.01□□□□□ -0.65
NEK3-201ENST00000550331 PPIP5K1Q6PFW1 1433 aa11.01□□□□□ -0.65
NEK3-201ENST00000550331 NRKQ7Z2Y5 1582 aa11□□□□□ -0.65
NEK3-201ENST00000550331 NBPF14Q5TI25 921 aa11□□□□□ -0.65
NEK3-201ENST00000550331 USP19O94966 1318 aa11□□□□□ -0.65
NEK3-201ENST00000550331 CPDO75976 1380 aa11□□□□□ -0.65
NEK3-201ENST00000550331 CAMTA1Q9Y6Y1 1673 aa10.99□□□□□ -0.65
NEK3-201ENST00000550331 ZC3H6P61129 1189 aaKnown RBP10.99□□□□□ -0.65
NEK3-201ENST00000550331 SRPK2P78362 688 aaKnown RBP10.99□□□□□ -0.65
NEK3-201ENST00000550331 CHRNA2Q15822 529 aa10.99□□□□□ -0.65
NEK3-201ENST00000550331 GPR153Q6NV75 609 aa10.99□□□□□ -0.65
NEK3-201ENST00000550331 ABTB2Q8N961 1025 aa10.99□□□□□ -0.65
NEK3-201ENST00000550331 STRN4Q9NRL3 753 aa10.99□□□□□ -0.65
NEK3-201ENST00000550331 SSH2Q76I76 1423 aa10.99□□□□□ -0.65
NEK3-201ENST00000550331 NUTM2GQ5VZR2 741 aa10.98□□□□□ -0.65
NEK3-201ENST00000550331 BARGINQ6ZT62 677 aa10.98□□□□□ -0.65
NEK3-201ENST00000550331 NLRP13Q86W25 1043 aa10.98□□□□□ -0.65
NEK3-201ENST00000550331 SPON1Q9HCB6 807 aa10.98□□□□□ -0.65
NEK3-201ENST00000550331 CHRM1P11229 460 aaPredicted RBP10.97□□□□□ -0.65
NEK3-201ENST00000550331 LSM11P83369 360 aaKnown RBP eCLIP10.97□□□□□ -0.656e-7■□□□□ 10.5
NEK3-201ENST00000550331 PDE3BQ13370 1112 aa10.97□□□□□ -0.65
NEK3-201ENST00000550331 USP35Q9P2H5 1018 aa10.97□□□□□ -0.65
NEK3-201ENST00000550331 HCSTQ9UBK5 93 aa10.97□□□□□ -0.65
NEK3-201ENST00000550331 NINLQ9Y2I6 1382 aa10.97□□□□□ -0.65
NEK3-201ENST00000550331 LMO7Q8WWI1 1683 aa10.97□□□□□ -0.65
NEK3-201ENST00000550331 USP6P35125 1406 aa10.96□□□□□ -0.65
NEK3-201ENST00000550331 KCNQ2O43526 872 aa10.96□□□□□ -0.65
NEK3-201ENST00000550331 GCP02774 474 aa10.96□□□□□ -0.65
NEK3-201ENST00000550331 EVA1CP58658 441 aa10.96□□□□□ -0.65
NEK3-201ENST00000550331 GSE1Q14687 1217 aa10.96□□□□□ -0.65
NEK3-201ENST00000550331 L3MBTL2Q969R5 705 aa10.96□□□□□ -0.65
NEK3-201ENST00000550331 CABP2Q9NPB3 220 aa10.96□□□□□ -0.65
NEK3-201ENST00000550331 QRICH2Q9H0J4 1663 aa10.95□□□□□ -0.66
NEK3-201ENST00000550331 COL5A2P05997 1499 aaPredicted RBP10.95□□□□□ -0.66
NEK3-201ENST00000550331 THRAP3Q9Y2W1 955 aaKnown RBP10.95□□□□□ -0.66
NEK3-201ENST00000550331 SLIT3O75094 1523 aa10.94□□□□□ -0.66
NEK3-201ENST00000550331 EVC2Q86UK5 1308 aa10.94□□□□□ -0.66
NEK3-201ENST00000550331 LARP1Q6PKG0 1096 aaKnown RBP10.94□□□□□ -0.66
NEK3-201ENST00000550331 TCP11L2Q8N4U5 519 aa10.94□□□□□ -0.66
NEK3-201ENST00000550331 CABP1Q9NZU7 370 aa10.94□□□□□ -0.66
NEK3-201ENST00000550331 TRPM1Q7Z4N2 1603 aa10.94□□□□□ -0.66
NEK3-201ENST00000550331 SBF2Q86WG5 1849 aa10.93□□□□□ -0.66
NEK3-201ENST00000550331 PDAP1Q13442 181 aaKnown RBP10.93□□□□□ -0.66
NEK3-201ENST00000550331 RGPD3A6NKT7 1758 aaPredicted RBP10.93□□□□□ -0.66
NEK3-201ENST00000550331 RGPD4Q7Z3J3 1758 aa10.93□□□□□ -0.66
NEK3-201ENST00000550331 CRB1P82279 1406 aa10.92□□□□□ -0.66
NEK3-201ENST00000550331 PARP4Q9UKK3 1724 aaKnown RBP10.92□□□□□ -0.66
NEK3-201ENST00000550331 ROCK2O75116 1388 aaKnown RBP10.92□□□□□ -0.66
NEK3-201ENST00000550331 AATKQ6ZMQ8 1374 aa10.92□□□□□ -0.66
NEK3-201ENST00000550331 CHD4Q14839 1912 aa10.92□□□□□ -0.66
NEK3-201ENST00000550331 NLRP6P59044 892 aa10.92□□□□□ -0.66
NEK3-201ENST00000550331 CASZ1Q86V15 1759 aa10.92□□□□□ -0.66
NEK3-201ENST00000550331 UTRNP46939 3433 aa10.91□□□□□ -0.66
NEK3-201ENST00000550331 C11orf95C9JLR9 678 aaPredicted RBP10.91□□□□□ -0.66
NEK3-201ENST00000550331 SIN3AQ96ST3 1273 aa10.91□□□□□ -0.66
NEK3-201ENST00000550331 MYOM1P52179 1685 aa10.9□□□□□ -0.66
NEK3-201ENST00000550331 ZNF784Q8NCA9 323 aaPredicted RBP10.9□□□□□ -0.66
NEK3-201ENST00000550331 SBNO2Q9Y2G9 1366 aa10.9□□□□□ -0.67
NEK3-201ENST00000550331 PEAK1Q9H792 1746 aa10.89□□□□□ -0.67
NEK3-201ENST00000550331 TTC21AQ8NDW8 1320 aa10.89□□□□□ -0.67
NEK3-201ENST00000550331 PIK3C2AO00443 1686 aa10.89□□□□□ -0.67
NEK3-201ENST00000550331 KCNH5Q8NCM2 988 aa10.89□□□□□ -0.67
NEK3-201ENST00000550331 CPSF1Q10570 1443 aaKnown RBP10.89□□□□□ -0.67
NEK3-201ENST00000550331 TTC21BQ7Z4L5 1316 aa10.88□□□□□ -0.67
NEK3-201ENST00000550331 SENP3-EIF4A1A0A087X0R7 540 aa10.88□□□□□ -0.67
NEK3-201ENST00000550331 OVOS2A0A0G2JMS6 1433 aa10.88□□□□□ -0.67
NEK3-201ENST00000550331 OVOS2A0A0J9YW53 1432 aa10.88□□□□□ -0.67
NEK3-201ENST00000550331 NEUROD1Q13562 356 aa10.88□□□□□ -0.67
NEK3-201ENST00000550331 OVOS2Q6IE36 1432 aa10.88□□□□□ -0.67
NEK3-201ENST00000550331 ANO8Q9HCE9 1232 aaPredicted RBP10.88□□□□□ -0.67
NEK3-201ENST00000550331 WDR17Q8IZU2 1322 aa10.87□□□□□ -0.67
NEK3-201ENST00000550331 ZNF316A6NFI3 1004 aaPredicted RBP10.87□□□□□ -0.67
NEK3-201ENST00000550331 ZBTB7AO95365 584 aa10.87□□□□□ -0.67
NEK3-201ENST00000550331 TOM1L2Q6ZVM7 507 aa10.87□□□□□ -0.67
NEK3-201ENST00000550331 ARHGEF25Q86VW2 580 aa10.87□□□□□ -0.67
NEK3-201ENST00000550331 LRRC37A3O60309 1634 aa10.87□□□□□ -0.67
NEK3-201ENST00000550331 AKAP12Q02952 1782 aa10.86□□□□□ -0.67
NEK3-201ENST00000550331 ABCC6O95255 1503 aa10.86□□□□□ -0.67
NEK3-201ENST00000550331 ZBTB7CA1YPR0 619 aa10.86□□□□□ -0.67
NEK3-201ENST00000550331 PLSCR1O15162 318 aa10.86□□□□□ -0.67
NEK3-201ENST00000550331 CDCA7Q9BWT1 371 aaPredicted RBP10.86□□□□□ -0.67
NEK3-201ENST00000550331 BCL11BQ9C0K0 894 aaPredicted RBP10.86□□□□□ -0.67
NEK3-201ENST00000550331 PDGFDQ9GZP0 370 aaPredicted RBP10.86□□□□□ -0.67
NEK3-201ENST00000550331 KTN1Q86UP2 1357 aaKnown RBP10.86□□□□□ -0.67
NEK3-201ENST00000550331 WNK3Q9BYP7 1800 aa10.86□□□□□ -0.67
NEK3-201ENST00000550331 BCL9O00512 1426 aa10.85□□□□□ -0.67
NEK3-201ENST00000550331 PBX2P40425 430 aa10.85□□□□□ -0.67
NEK3-201ENST00000550331 DDB1Q16531 1140 aa10.85□□□□□ -0.67
NEK3-201ENST00000550331 AXIN2Q9Y2T1 843 aa10.85□□□□□ -0.67
NEK3-201ENST00000550331 COL18A1P39060 1754 aa10.85□□□□□ -0.67
NEK3-201ENST00000550331 NFAT5O94916 1531 aa10.84□□□□□ -0.67
NEK3-201ENST00000550331 USP31Q70CQ4 1352 aa10.84□□□□□ -0.67
NEK3-201ENST00000550331 CCDC7Q96M83 1385 aa10.83□□□□□ -0.68
NEK3-201ENST00000550331 C1QTNF8P60827 252 aa10.83□□□□□ -0.68
NEK3-201ENST00000550331 TMEM92Q6UXU6 159 aa10.83□□□□□ -0.68
NEK3-201ENST00000550331 CARD10Q9BWT7 1032 aa10.83□□□□□ -0.68
NEK3-201ENST00000550331 CARD11Q9BXL7 1154 aa10.83□□□□□ -0.68
NEK3-201ENST00000550331 CD163L1Q9NR16 1453 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms