RNA–Protein interactions for RNA: ENST00000527046.5

NEDD8-205, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 847 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-205ENST00000527046 SOCS7O14512 581 aa14.45□□□□□ -0.1
NEDD8-205ENST00000527046 ADAMTS8Q9UP79 889 aa14.45□□□□□ -0.1
NEDD8-205ENST00000527046 CYP27B1O15528 508 aa14.44□□□□□ -0.1
NEDD8-205ENST00000527046 FCHSD2O94868 740 aa14.44□□□□□ -0.1
NEDD8-205ENST00000527046 U2AF1L5P0DN76 240 aaPredicted RBP14.44□□□□□ -0.1
NEDD8-205ENST00000527046 U2AF1Q01081 240 aaKnown RBP eCLIP14.44□□□□□ -0.1
NEDD8-205ENST00000527046 FAM182BQ5T319 152 aa14.44□□□□□ -0.1
NEDD8-205ENST00000527046 PKD1L3Q7Z443 1732 aa14.44□□□□□ -0.1
NEDD8-205ENST00000527046 EXOC5O00471 708 aa14.43□□□□□ -0.1
NEDD8-205ENST00000527046 DDB1Q16531 1140 aa14.43□□□□□ -0.1
NEDD8-205ENST00000527046 ZCRB1Q8TBF4 217 aaKnown RBP14.43□□□□□ -0.1
NEDD8-205ENST00000527046 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.43□□□□□ -0.16e-8■■□□□ 11.8
NEDD8-205ENST00000527046 NUDCQ9Y266 331 aa14.43□□□□□ -0.1
NEDD8-205ENST00000527046 TATP17735 454 aaPredicted RBP14.42□□□□□ -0.1
NEDD8-205ENST00000527046 KRT27Q7Z3Y8 459 aa14.42□□□□□ -0.1
NEDD8-205ENST00000527046 RAPGEF4Q8WZA2 1011 aa14.42□□□□□ -0.1
NEDD8-205ENST00000527046 TNS2Q63HR2 1409 aa14.41□□□□□ -0.1
NEDD8-205ENST00000527046 PRKAR2BP31323 418 aa14.41□□□□□ -0.1
NEDD8-205ENST00000527046 MTHFSDQ2M296 383 aaKnown RBP14.41□□□□□ -0.1
NEDD8-205ENST00000527046 MRS2Q9HD23 443 aa14.41□□□□□ -0.1
NEDD8-205ENST00000527046 PLEKHG2Q9H7P9 1386 aa14.4□□□□□ -0.1
NEDD8-205ENST00000527046 CCER2I3L3R5 266 aa14.4□□□□□ -0.1
NEDD8-205ENST00000527046 NKX1-1Q15270 411 aaPredicted RBP14.4□□□□□ -0.1
NEDD8-205ENST00000527046 PTF1AQ7RTS3 328 aa14.4□□□□□ -0.1
NEDD8-205ENST00000527046 BCL9O00512 1426 aa14.39□□□□□ -0.11
NEDD8-205ENST00000527046 PHKG2P15735 406 aa14.38□□□□□ -0.11
NEDD8-205ENST00000527046 PLEKHO1Q53GL0 409 aaPredicted RBP14.38□□□□□ -0.11
NEDD8-205ENST00000527046 DDX54Q8TDD1 881 aaKnown RBP14.38□□□□□ -0.11
NEDD8-205ENST00000527046 SBF2Q86WG5 1849 aa14.37□□□□□ -0.11
NEDD8-205ENST00000527046 A0A0G2JS52 829 aa14.37□□□□□ -0.11
NEDD8-205ENST00000527046 MYT1Q01538 1121 aa14.37□□□□□ -0.11
NEDD8-205ENST00000527046 PDE3BQ13370 1112 aa14.37□□□□□ -0.11
NEDD8-205ENST00000527046 AMOTQ4VCS5 1084 aa14.37□□□□□ -0.11
NEDD8-205ENST00000527046 SPG7Q9UQ90 795 aa14.37□□□□□ -0.11
NEDD8-205ENST00000527046 CCDC146Q8IYE0 955 aa14.36□□□□□ -0.11
NEDD8-205ENST00000527046 KCNQ2O43526 872 aa14.35□□□□□ -0.11
NEDD8-205ENST00000527046 IFNL2Q8IZJ0 200 aa14.35□□□□□ -0.11
NEDD8-205ENST00000527046 LGR6Q9HBX8 967 aa14.35□□□□□ -0.11
NEDD8-205ENST00000527046 ADAMTS7Q9UKP4 1686 aa14.35□□□□□ -0.11
NEDD8-205ENST00000527046 PCDH11XQ9BZA7 1347 aa14.35□□□□□ -0.11
NEDD8-205ENST00000527046 PCDH11YQ9BZA8 1340 aa14.35□□□□□ -0.11
NEDD8-205ENST00000527046 TOGARAM1Q9Y4F4 1720 aa14.35□□□□□ -0.11
NEDD8-205ENST00000527046 KDM6AO15550 1401 aaPredicted RBP14.34□□□□□ -0.11
NEDD8-205ENST00000527046 ZNF530Q6P9A1 599 aaPredicted RBP14.34□□□□□ -0.11
NEDD8-205ENST00000527046 FAM196AQ6ZSG2 479 aa14.34□□□□□ -0.11
NEDD8-205ENST00000527046 IL17REQ8NFR9 667 aa14.34□□□□□ -0.11
NEDD8-205ENST00000527046 DLG5Q8TDM6 1919 aa14.33□□□□□ -0.11
NEDD8-205ENST00000527046 WDR43Q15061 677 aaKnown RBP eCLIP14.33□□□□□ -0.12
NEDD8-205ENST00000527046 AKAP4Q5JQC9 854 aa14.33□□□□□ -0.12
NEDD8-205ENST00000527046 RUNDC1Q96C34 613 aa14.33□□□□□ -0.12
NEDD8-205ENST00000527046 MPRIPQ6WCQ1 1025 aa14.32□□□□□ -0.12
NEDD8-205ENST00000527046 VIRMAQ69YN4 1812 aaKnown RBP14.31□□□□□ -0.12
NEDD8-205ENST00000527046 TMPOP42166 694 aaKnown RBP14.31□□□□□ -0.12
NEDD8-205ENST00000527046 NFE2L2Q16236 605 aa14.31□□□□□ -0.12
NEDD8-205ENST00000527046 FAM9BQ8IZU0 186 aa14.31□□□□□ -0.12
NEDD8-205ENST00000527046 UPF1Q92900 1129 aaKnown RBP eCLIP14.31□□□□□ -0.123e-7■□□□□ 10.1
NEDD8-205ENST00000527046 SCN11AQ9UI33 1791 aa14.31□□□□□ -0.12
NEDD8-205ENST00000527046 ITGB4P16144 1822 aa14.31□□□□□ -0.12
NEDD8-205ENST00000527046 APAF1O14727 1248 aa14.3□□□□□ -0.12
NEDD8-205ENST00000527046 RNMTO43148 476 aaKnown RBP14.3□□□□□ -0.12
NEDD8-205ENST00000527046 TRIM37O94972 964 aa14.3□□□□□ -0.12
NEDD8-205ENST00000527046 PRIM1P49642 420 aaKnown RBP14.3□□□□□ -0.12
NEDD8-205ENST00000527046 GAS2L2Q8NHY3 880 aa14.3□□□□□ -0.12
NEDD8-205ENST00000527046 ACSBG1Q96GR2 724 aa14.3□□□□□ -0.12
NEDD8-205ENST00000527046 DCAF5Q96JK2 942 aa14.3□□□□□ -0.12
NEDD8-205ENST00000527046 TRIM35Q9UPQ4 493 aa14.3□□□□□ -0.12
NEDD8-205ENST00000527046 DOT1LQ8TEK3 1739 aa14.29□□□□□ -0.12
NEDD8-205ENST00000527046 SENP3-EIF4A1A0A087X0R7 540 aa14.29□□□□□ -0.12
NEDD8-205ENST00000527046 GNAT3A8MTJ3 354 aa14.29□□□□□ -0.12
NEDD8-205ENST00000527046 DCTN1Q14203 1278 aa14.29□□□□□ -0.12
NEDD8-205ENST00000527046 PNNQ9H307 717 aaKnown RBP14.29□□□□□ -0.12
NEDD8-205ENST00000527046 RRP7AQ9Y3A4 280 aaKnown RBP14.29□□□□□ -0.12
NEDD8-205ENST00000527046 CEMIPQ8WUJ3 1361 aa14.29□□□□□ -0.12
NEDD8-205ENST00000527046 NHSQ6T4R5 1651 aa14.28□□□□□ -0.12
NEDD8-205ENST00000527046 PIGBQ92521 554 aa14.28□□□□□ -0.12
NEDD8-205ENST00000527046 MAP3K5Q99683 1374 aa14.28□□□□□ -0.12
NEDD8-205ENST00000527046 BCL11BQ9C0K0 894 aaPredicted RBP14.28□□□□□ -0.12
NEDD8-205ENST00000527046 TNS1Q9HBL0 1735 aaKnown RBP14.28□□□□□ -0.12
NEDD8-205ENST00000527046 ERVV-2B6SEH9 535 aa14.27□□□□□ -0.13
NEDD8-205ENST00000527046 HTATSF1O43719 755 aaKnown RBP14.27□□□□□ -0.13
NEDD8-205ENST00000527046 RIPK4P57078 832 aa14.27□□□□□ -0.13
NEDD8-205ENST00000527046 C1orf141Q5JVX7 400 aa14.27□□□□□ -0.13
NEDD8-205ENST00000527046 MCM10Q7L590 875 aa14.27□□□□□ -0.13
NEDD8-205ENST00000527046 PROM2Q8N271 834 aa14.27□□□□□ -0.13
NEDD8-205ENST00000527046 KAT6BQ8WYB5 2073 aa14.26□□□□□ -0.13
NEDD8-205ENST00000527046 HSP90AB1P08238 724 aaKnown RBP14.26□□□□□ -0.13
NEDD8-205ENST00000527046 NFATC2IPQ8NCF5 419 aa14.26□□□□□ -0.13
NEDD8-205ENST00000527046 THUMPD2Q9BTF0 503 aaKnown RBP14.26□□□□□ -0.13
NEDD8-205ENST00000527046 SIPA1L3O60292 1781 aaPredicted RBP14.26□□□□□ -0.13
NEDD8-205ENST00000527046 EP400Q96L91 3159 aa14.26□□□□□ -0.13
NEDD8-205ENST00000527046 MRC1P22897 1456 aa14.25□□□□□ -0.13
NEDD8-205ENST00000527046 BTAF1O14981 1849 aa14.25□□□□□ -0.13
NEDD8-205ENST00000527046 MAPK8IP3Q9UPT6 1336 aa14.24□□□□□ -0.13
NEDD8-205ENST00000527046 NEUROD2Q15784 382 aa14.24□□□□□ -0.13
NEDD8-205ENST00000527046 NCBP3Q53F19 620 aaKnown RBP14.24□□□□□ -0.13
NEDD8-205ENST00000527046 SLC52A2Q9HAB3 445 aa14.24□□□□□ -0.13
NEDD8-205ENST00000527046 DEFB132Q7Z7B7 95 aa14.23□□□□□ -0.13
NEDD8-205ENST00000527046 CCDC125Q86Z20 511 aa14.23□□□□□ -0.13
NEDD8-205ENST00000527046 CAMKK2Q96RR4 588 aa14.23□□□□□ -0.13
NEDD8-205ENST00000527046 ATG3Q9NT62 314 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms