RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, humanhuman

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-208ENST00000504489 NCAPD2Q15021 1401 aa16.06■□□□□ 0.16
PDLIM5-208ENST00000504489 NBPF6Q5VWK0 638 aa16.06■□□□□ 0.16
PDLIM5-208ENST00000504489 NBPF4Q96M43 638 aa16.06■□□□□ 0.16
PDLIM5-208ENST00000504489 PRKRIP1Q9H875 184 aaPredicted RBP16.06■□□□□ 0.16
PDLIM5-208ENST00000504489 LRRC37A3O60309 1634 aa16.05■□□□□ 0.16
PDLIM5-208ENST00000504489 DISP2A7MBM2 1401 aa16.05■□□□□ 0.16
PDLIM5-208ENST00000504489 CDCA7Q9BWT1 371 aaPredicted RBP16.05■□□□□ 0.16
PDLIM5-208ENST00000504489 SHANK3Q9BYB0 1731 aa16.05■□□□□ 0.16
PDLIM5-208ENST00000504489 SEPT12Q8IYM1 358 aa16.04■□□□□ 0.16
PDLIM5-208ENST00000504489 SBF2Q86WG5 1849 aa16.03■□□□□ 0.16
PDLIM5-208ENST00000504489 PKD1L3Q7Z443 1732 aa16.03■□□□□ 0.16
PDLIM5-208ENST00000504489 MYBBP1AQ9BQG0 1328 aaKnown RBP16.03■□□□□ 0.16
PDLIM5-208ENST00000504489 IL13P35225 146 aa16.03■□□□□ 0.16
PDLIM5-208ENST00000504489 ILDR2Q71H61 639 aa16.03■□□□□ 0.16
PDLIM5-208ENST00000504489 CFAP53Q96M91 514 aa16.03■□□□□ 0.16
PDLIM5-208ENST00000504489 EYA1Q99502 592 aa16.03■□□□□ 0.16
PDLIM5-208ENST00000504489 IGSF1Q8N6C5 1336 aa16.02■□□□□ 0.16
PDLIM5-208ENST00000504489 DIAPH1O60610 1272 aaKnown RBP16.02■□□□□ 0.16
PDLIM5-208ENST00000504489 VIRMAQ69YN4 1812 aaKnown RBP16.02■□□□□ 0.16
PDLIM5-208ENST00000504489 IL2RBP14784 551 aa16.01■□□□□ 0.15
PDLIM5-208ENST00000504489 A0A0G2JS52 829 aa16■□□□□ 0.15
PDLIM5-208ENST00000504489 MYT1Q01538 1121 aa16■□□□□ 0.15
PDLIM5-208ENST00000504489 USHBP1Q8N6Y0 703 aa16■□□□□ 0.15
PDLIM5-208ENST00000504489 ANP32CO43423 234 aa15.99■□□□□ 0.15
PDLIM5-208ENST00000504489 MKRN4PQ13434 485 aaPredicted RBP15.99■□□□□ 0.15
PDLIM5-208ENST00000504489 MEGF6O75095 1541 aa15.99■□□□□ 0.15
PDLIM5-208ENST00000504489 OVOS2A0A0G2JMS6 1433 aa15.98■□□□□ 0.15
PDLIM5-208ENST00000504489 POTEHQ6S545 545 aa15.98■□□□□ 0.15
PDLIM5-208ENST00000504489 RAPGEF4Q8WZA2 1011 aa15.98■□□□□ 0.15
PDLIM5-208ENST00000504489 KDRP35968 1356 aa15.98■□□□□ 0.15
PDLIM5-208ENST00000504489 PLEKHG2Q9H7P9 1386 aa15.98■□□□□ 0.15
PDLIM5-208ENST00000504489 TNS2Q63HR2 1409 aa15.97■□□□□ 0.15
PDLIM5-208ENST00000504489 EXOC5O00471 708 aa15.97■□□□□ 0.15
PDLIM5-208ENST00000504489 DDB1Q16531 1140 aa15.97■□□□□ 0.15
PDLIM5-208ENST00000504489 KRT27Q7Z3Y8 459 aa15.97■□□□□ 0.15
PDLIM5-208ENST00000504489 NUDCQ9Y266 331 aa15.97■□□□□ 0.15
PDLIM5-208ENST00000504489 TATP17735 454 aaPredicted RBP15.96■□□□□ 0.15
PDLIM5-208ENST00000504489 PDE3BQ13370 1112 aa15.96■□□□□ 0.15
PDLIM5-208ENST00000504489 SPDYE2BA6NHP3 402 aa15.95■□□□□ 0.14
PDLIM5-208ENST00000504489 SPDYE6P0CI01 402 aa15.95■□□□□ 0.14
PDLIM5-208ENST00000504489 SPDYE2Q495Y8 402 aa15.95■□□□□ 0.14
PDLIM5-208ENST00000504489 SULT6B1Q6IMI4 303 aa15.95■□□□□ 0.14
PDLIM5-208ENST00000504489 EP400Q96L91 3159 aa15.94■□□□□ 0.14
PDLIM5-208ENST00000504489 AEBP1Q8IUX7 1158 aa15.94■□□□□ 0.14
PDLIM5-208ENST00000504489 ZCRB1Q8TBF4 217 aaKnown RBP15.94■□□□□ 0.14
PDLIM5-208ENST00000504489 DLG5Q8TDM6 1919 aa15.94■□□□□ 0.14
PDLIM5-208ENST00000504489 ITGB4P16144 1822 aa15.94■□□□□ 0.14
PDLIM5-208ENST00000504489 U2SURPO15042 1029 aaKnown RBP15.93■□□□□ 0.14
PDLIM5-208ENST00000504489 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.93■□□□□ 0.144e-6■■■□□ 18.5
PDLIM5-208ENST00000504489 SCN11AQ9UI33 1791 aa15.92■□□□□ 0.14
PDLIM5-208ENST00000504489 HMOX1P09601 288 aa15.91■□□□□ 0.14
PDLIM5-208ENST00000504489 MARCH10Q8NA82 808 aaPredicted RBP15.91■□□□□ 0.14
PDLIM5-208ENST00000504489 DOT1LQ8TEK3 1739 aa15.91■□□□□ 0.14
PDLIM5-208ENST00000504489 U2AF1L5P0DN76 240 aaPredicted RBP15.9■□□□□ 0.14
PDLIM5-208ENST00000504489 U2AF1Q01081 240 aaKnown RBP eCLIP15.9■□□□□ 0.14
PDLIM5-208ENST00000504489 CHRDL2Q6WN34 429 aa15.9■□□□□ 0.14
PDLIM5-208ENST00000504489 FAM196AQ6ZSG2 479 aa15.9■□□□□ 0.14
PDLIM5-208ENST00000504489 REM2Q8IYK8 340 aaPredicted RBP15.9■□□□□ 0.14
PDLIM5-208ENST00000504489 SPG7Q9UQ90 795 aa15.9■□□□□ 0.14
PDLIM5-208ENST00000504489 BCL9O00512 1426 aa15.9■□□□□ 0.14
PDLIM5-208ENST00000504489 NHSQ6T4R5 1651 aa15.89■□□□□ 0.13
PDLIM5-208ENST00000504489 TNS1Q9HBL0 1735 aaKnown RBP15.89■□□□□ 0.13
PDLIM5-208ENST00000504489 FCHSD2O94868 740 aa15.89■□□□□ 0.13
PDLIM5-208ENST00000504489 AMOTQ4VCS5 1084 aa15.89■□□□□ 0.13
PDLIM5-208ENST00000504489 PLEKHO1Q53GL0 409 aaPredicted RBP15.89■□□□□ 0.13
PDLIM5-208ENST00000504489 DIEXFQ68CQ4 756 aaKnown RBP15.89■□□□□ 0.13
PDLIM5-208ENST00000504489 RSPH6AQ9H0K4 717 aa15.89■□□□□ 0.13
PDLIM5-208ENST00000504489 PCDH11XQ9BZA7 1347 aa15.89■□□□□ 0.13
PDLIM5-208ENST00000504489 PCDH11YQ9BZA8 1340 aa15.89■□□□□ 0.13
PDLIM5-208ENST00000504489 FAM182BQ5T319 152 aa15.88■□□□□ 0.13
PDLIM5-208ENST00000504489 DDX54Q8TDD1 881 aaKnown RBP15.88■□□□□ 0.13
PDLIM5-208ENST00000504489 TOGARAM1Q9Y4F4 1720 aa15.88■□□□□ 0.13
PDLIM5-208ENST00000504489 BTAF1O14981 1849 aa15.87■□□□□ 0.13
PDLIM5-208ENST00000504489 CYP27B1O15528 508 aa15.86■□□□□ 0.13
PDLIM5-208ENST00000504489 CCDC184Q52MB2 194 aa15.86■□□□□ 0.13
PDLIM5-208ENST00000504489 PRKAR2BP31323 418 aa15.85■□□□□ 0.13
PDLIM5-208ENST00000504489 IFNL2Q8IZJ0 200 aa15.85■□□□□ 0.13
PDLIM5-208ENST00000504489 PNNQ9H307 717 aaKnown RBP15.85■□□□□ 0.13
PDLIM5-208ENST00000504489 ADAMTS7Q9UKP4 1686 aa15.84■□□□□ 0.13
PDLIM5-208ENST00000504489 PHKG2P15735 406 aa15.84■□□□□ 0.13
PDLIM5-208ENST00000504489 WDR43Q15061 677 aaKnown RBP eCLIP15.84■□□□□ 0.13
PDLIM5-208ENST00000504489 NKX1-1Q15270 411 aaPredicted RBP15.84■□□□□ 0.13
PDLIM5-208ENST00000504489 RGPD3A6NKT7 1758 aaPredicted RBP15.83■□□□□ 0.12
PDLIM5-208ENST00000504489 RGPD4Q7Z3J3 1758 aa15.83■□□□□ 0.12
PDLIM5-208ENST00000504489 ZNF530Q6P9A1 599 aaPredicted RBP15.83■□□□□ 0.12
PDLIM5-208ENST00000504489 CCDC125Q86Z20 511 aa15.83■□□□□ 0.12
PDLIM5-208ENST00000504489 UPF1Q92900 1129 aaKnown RBP eCLIP15.83■□□□□ 0.12
PDLIM5-208ENST00000504489 MRS2Q9HD23 443 aa15.83■□□□□ 0.12
PDLIM5-208ENST00000504489 SOCS7O14512 581 aa15.82■□□□□ 0.12
PDLIM5-208ENST00000504489 MTHFSDQ2M296 383 aaKnown RBP15.82■□□□□ 0.12
PDLIM5-208ENST00000504489 PHACTR3Q96KR7 559 aa15.82■□□□□ 0.12
PDLIM5-208ENST00000504489 PLEKHF1Q96S99 279 aa15.82■□□□□ 0.12
PDLIM5-208ENST00000504489 SIPA1L3O60292 1781 aaPredicted RBP15.82■□□□□ 0.12
PDLIM5-208ENST00000504489 HSP90AB1P08238 724 aaKnown RBP15.81■□□□□ 0.12
PDLIM5-208ENST00000504489 C1orf141Q5JVX7 400 aa15.81■□□□□ 0.12
PDLIM5-208ENST00000504489 GAS2L2Q8NHY3 880 aa15.81■□□□□ 0.12
PDLIM5-208ENST00000504489 PNISRQ8TF01 805 aaKnown RBP15.81■□□□□ 0.12
PDLIM5-208ENST00000504489 ADAMTS8Q9UP79 889 aa15.81■□□□□ 0.12
PDLIM5-208ENST00000504489 TRIM37O94972 964 aa15.8■□□□□ 0.12
PDLIM5-208ENST00000504489 NEFMP07197 916 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms