RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 DCBLD2Q96PD2 775 aa13.84□□□□□ -0.19
SKA1-204ENST00000488454 MYBBP1AQ9BQG0 1328 aaKnown RBP13.84□□□□□ -0.19
SKA1-204ENST00000488454 TRPC5Q9UL62 973 aaPredicted RBP13.83□□□□□ -0.2
SKA1-204ENST00000488454 BLMP54132 1417 aaPredicted RBP13.82□□□□□ -0.2
SKA1-204ENST00000488454 CRYBG1Q9Y4K1 1723 aa13.82□□□□□ -0.2
SKA1-204ENST00000488454 TOM1L2Q6ZVM7 507 aa13.82□□□□□ -0.2
SKA1-204ENST00000488454 IFNL1Q8IU54 200 aa13.82□□□□□ -0.2
SKA1-204ENST00000488454 QTRT2Q9H974 415 aaKnown RBP13.82□□□□□ -0.2
SKA1-204ENST00000488454 INSRP06213 1382 aa13.82□□□□□ -0.2
SKA1-204ENST00000488454 SMG6Q86US8 1419 aaKnown RBP13.81□□□□□ -0.2
SKA1-204ENST00000488454 ABCA3Q99758 1704 aa13.81□□□□□ -0.2
SKA1-204ENST00000488454 ANKRD26Q9UPS8 1709 aa13.81□□□□□ -0.2
SKA1-204ENST00000488454 MARF1Q9Y4F3 1742 aaKnown RBP13.81□□□□□ -0.2
SKA1-204ENST00000488454 NLRP2Q9NX02 1062 aa13.81□□□□□ -0.2
SKA1-204ENST00000488454 TRPC6Q9Y210 931 aa13.81□□□□□ -0.2
SKA1-204ENST00000488454 COL14A1Q05707 1796 aaKnown RBP13.81□□□□□ -0.2
SKA1-204ENST00000488454 SLIT2O94813 1529 aa13.8□□□□□ -0.2
SKA1-204ENST00000488454 DIAPH1O60610 1272 aaKnown RBP13.8□□□□□ -0.2
SKA1-204ENST00000488454 VPS72Q15906 364 aa13.8□□□□□ -0.2
SKA1-204ENST00000488454 LARP1Q6PKG0 1096 aaKnown RBP13.8□□□□□ -0.2
SKA1-204ENST00000488454 NUDCQ9Y266 331 aa13.8□□□□□ -0.2
SKA1-204ENST00000488454 ERBB3P21860 1342 aa13.8□□□□□ -0.2
SKA1-204ENST00000488454 WDR17Q8IZU2 1322 aa13.8□□□□□ -0.2
SKA1-204ENST00000488454 CAMTA1Q9Y6Y1 1673 aa13.79□□□□□ -0.2
SKA1-204ENST00000488454 EIF4A2Q14240 407 aaKnown RBP13.79□□□□□ -0.2
SKA1-204ENST00000488454 USP35Q9P2H5 1018 aa13.79□□□□□ -0.2
SKA1-204ENST00000488454 BCL9LQ86UU0 1499 aa13.79□□□□□ -0.2
SKA1-204ENST00000488454 GJD4Q96KN9 370 aaPredicted RBP13.78□□□□□ -0.2
SKA1-204ENST00000488454 CARD10Q9BWT7 1032 aa13.78□□□□□ -0.2
SKA1-204ENST00000488454 COL5A2P05997 1499 aaPredicted RBP13.78□□□□□ -0.2
SKA1-204ENST00000488454 ABCC6O95255 1503 aa13.78□□□□□ -0.2
SKA1-204ENST00000488454 CDK12Q9NYV4 1490 aaPredicted RBP13.77□□□□□ -0.21
SKA1-204ENST00000488454 PCDHB8Q9UN66 801 aa13.77□□□□□ -0.21
SKA1-204ENST00000488454 MAP2P11137 1827 aaKnown RBP13.76□□□□□ -0.21
SKA1-204ENST00000488454 SPATA31A5Q5VU36 1347 aa13.76□□□□□ -0.21
SKA1-204ENST00000488454 SPATA31A7Q8IWB4 1347 aa13.76□□□□□ -0.21
SKA1-204ENST00000488454 U2SURPO15042 1029 aaKnown RBP13.76□□□□□ -0.21
SKA1-204ENST00000488454 RXRBP28702 533 aa13.76□□□□□ -0.21
SKA1-204ENST00000488454 IL13P35225 146 aa13.76□□□□□ -0.21
SKA1-204ENST00000488454 NBPF6Q5VWK0 638 aa13.76□□□□□ -0.21
SKA1-204ENST00000488454 TCP11L2Q8N4U5 519 aa13.76□□□□□ -0.21
SKA1-204ENST00000488454 NBPF4Q96M43 638 aa13.76□□□□□ -0.21
SKA1-204ENST00000488454 THRAP3Q9Y2W1 955 aaKnown RBP13.76□□□□□ -0.21
SKA1-204ENST00000488454 LTN1O94822 1766 aa13.76□□□□□ -0.21
SKA1-204ENST00000488454 CRB1P82279 1406 aa13.75□□□□□ -0.21
SKA1-204ENST00000488454 SPATA31A1Q5TZJ5 1347 aa13.75□□□□□ -0.21
SKA1-204ENST00000488454 RBM6P78332 1123 aaKnown RBP13.75□□□□□ -0.21
SKA1-204ENST00000488454 EYA1Q99502 592 aa13.75□□□□□ -0.21
SKA1-204ENST00000488454 RGS17Q9UGC6 210 aaPredicted RBP13.75□□□□□ -0.21
SKA1-204ENST00000488454 COL18A1P39060 1754 aa13.74□□□□□ -0.21
SKA1-204ENST00000488454 A0A0G2JS52 829 aa13.74□□□□□ -0.21
SKA1-204ENST00000488454 MYT1Q01538 1121 aa13.74□□□□□ -0.21
SKA1-204ENST00000488454 LMO7Q8WWI1 1683 aa13.74□□□□□ -0.21
SKA1-204ENST00000488454 ATRNO75882 1429 aa13.73□□□□□ -0.21
SKA1-204ENST00000488454 NWD2Q9ULI1 1742 aa13.73□□□□□ -0.21
SKA1-204ENST00000488454 U2AF1L5P0DN76 240 aaPredicted RBP13.73□□□□□ -0.21
SKA1-204ENST00000488454 TIE1P35590 1138 aa13.73□□□□□ -0.21
SKA1-204ENST00000488454 U2AF1Q01081 240 aaKnown RBP eCLIP13.73□□□□□ -0.21
SKA1-204ENST00000488454 WDR43Q15061 677 aaKnown RBP eCLIP13.73□□□□□ -0.21
SKA1-204ENST00000488454 FAM98CQ17RN3 349 aaKnown RBP13.73□□□□□ -0.21
SKA1-204ENST00000488454 ASTLQ6HA08 431 aaPredicted RBP13.73□□□□□ -0.21
SKA1-204ENST00000488454 POTEAQ6S8J7 498 aa13.73□□□□□ -0.21
SKA1-204ENST00000488454 ZNF467Q7Z7K2 595 aaPredicted RBP13.73□□□□□ -0.21
SKA1-204ENST00000488454 USHBP1Q8N6Y0 703 aa13.73□□□□□ -0.21
SKA1-204ENST00000488454 RAPGEF4Q8WZA2 1011 aa13.73□□□□□ -0.21
SKA1-204ENST00000488454 CDCA7Q9BWT1 371 aaPredicted RBP13.73□□□□□ -0.21
SKA1-204ENST00000488454 MRS2Q9HD23 443 aa13.73□□□□□ -0.21
SKA1-204ENST00000488454 BMP2KQ9NSY1 1161 aaPredicted RBP13.73□□□□□ -0.21
SKA1-204ENST00000488454 PEAK1Q9H792 1746 aa13.73□□□□□ -0.21
SKA1-204ENST00000488454 PLCH1Q4KWH8 1693 aa13.72□□□□□ -0.21
SKA1-204ENST00000488454 ATMINO43313 823 aaPredicted RBP13.72□□□□□ -0.21
SKA1-204ENST00000488454 SULT6B1Q6IMI4 303 aa13.72□□□□□ -0.21
SKA1-204ENST00000488454 BARGINQ6ZT62 677 aa13.72□□□□□ -0.21
SKA1-204ENST00000488454 IL2RBP14784 551 aa13.71□□□□□ -0.21
SKA1-204ENST00000488454 TATP17735 454 aaPredicted RBP13.71□□□□□ -0.21
SKA1-204ENST00000488454 PNNQ9H307 717 aaKnown RBP13.71□□□□□ -0.21
SKA1-204ENST00000488454 IGSF1Q8N6C5 1336 aa13.7□□□□□ -0.22
SKA1-204ENST00000488454 NEFMP07197 916 aa13.7□□□□□ -0.22
SKA1-204ENST00000488454 HMOX1P09601 288 aa13.7□□□□□ -0.22
SKA1-204ENST00000488454 CCER2I3L3R5 266 aa13.69□□□□□ -0.22
SKA1-204ENST00000488454 EXOC5O00471 708 aa13.69□□□□□ -0.22
SKA1-204ENST00000488454 ONECUT3O60422 494 aaPredicted RBP13.69□□□□□ -0.22
SKA1-204ENST00000488454 RGPD5Q99666 1765 aa13.68□□□□□ -0.22
SKA1-204ENST00000488454 FCHSD2O94868 740 aa13.68□□□□□ -0.22
SKA1-204ENST00000488454 CCDC184Q52MB2 194 aa13.68□□□□□ -0.22
SKA1-204ENST00000488454 SEPT12Q8IYM1 358 aa13.68□□□□□ -0.22
SKA1-204ENST00000488454 PELP1Q8IZL8 1130 aaKnown RBP13.68□□□□□ -0.22
SKA1-204ENST00000488454 NRAPQ86VF7 1730 aa13.67□□□□□ -0.22
SKA1-204ENST00000488454 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.67□□□□□ -0.22
SKA1-204ENST00000488454 TTLL13PA6NNM8 815 aa13.67□□□□□ -0.22
SKA1-204ENST00000488454 ATN1P54259 1190 aaPredicted RBP13.67□□□□□ -0.22
SKA1-204ENST00000488454 PDE3BQ13370 1112 aa13.67□□□□□ -0.22
SKA1-204ENST00000488454 DDB1Q16531 1140 aa13.67□□□□□ -0.22
SKA1-204ENST00000488454 AEBP1Q8IUX7 1158 aa13.67□□□□□ -0.22
SKA1-204ENST00000488454 COL3A1P02461 1466 aaPredicted RBP13.67□□□□□ -0.22
SKA1-204ENST00000488454 PLEKHO1Q53GL0 409 aaPredicted RBP13.66□□□□□ -0.22
SKA1-204ENST00000488454 ZCRB1Q8TBF4 217 aaKnown RBP13.66□□□□□ -0.22
SKA1-204ENST00000488454 SPG7Q9UQ90 795 aa13.66□□□□□ -0.22
SKA1-204ENST00000488454 ECM2O94769 699 aaPredicted RBP13.65□□□□□ -0.22
SKA1-204ENST00000488454 PRKAR2BP31323 418 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms