RNA–Protein interactions for RNA: ENST00000486665.5

HDAC6-229, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-229ENST00000486665 RGPD3A6NKT7 1758 aaPredicted RBP17.12■□□□□ 0.33
HDAC6-229ENST00000486665 RGPD4Q7Z3J3 1758 aa17.12■□□□□ 0.33
HDAC6-229ENST00000486665 PNISRQ8TF01 805 aaKnown RBP17.11■□□□□ 0.33
HDAC6-229ENST00000486665 CASZ1Q86V15 1759 aa17.1■□□□□ 0.33
HDAC6-229ENST00000486665 TOM1L2Q6ZVM7 507 aa17.1■□□□□ 0.33
HDAC6-229ENST00000486665 MARCH10Q8NA82 808 aaPredicted RBP17.1■□□□□ 0.33
HDAC6-229ENST00000486665 ANO8Q9HCE9 1232 aaPredicted RBP17.1■□□□□ 0.33
HDAC6-229ENST00000486665 DDB1Q16531 1140 aa17.09■□□□□ 0.33
HDAC6-229ENST00000486665 NBPF14Q5TI25 921 aa17.09■□□□□ 0.33
HDAC6-229ENST00000486665 EYA1Q99502 592 aa17.09■□□□□ 0.33
HDAC6-229ENST00000486665 ERBB3P21860 1342 aa17.09■□□□□ 0.33
HDAC6-229ENST00000486665 WDR17Q8IZU2 1322 aa17.09■□□□□ 0.33
HDAC6-229ENST00000486665 ABCC6O95255 1503 aa17.09■□□□□ 0.33
HDAC6-229ENST00000486665 U2SURPO15042 1029 aaKnown RBP17.08■□□□□ 0.32
HDAC6-229ENST00000486665 NBPF6Q5VWK0 638 aa17.08■□□□□ 0.32
HDAC6-229ENST00000486665 NBPF4Q96M43 638 aa17.08■□□□□ 0.32
HDAC6-229ENST00000486665 CSB-PGBD3P0DP91 1061 aa17.07■□□□□ 0.32
HDAC6-229ENST00000486665 PROM2Q8N271 834 aa17.07■□□□□ 0.32
HDAC6-229ENST00000486665 PDGFDQ9GZP0 370 aaPredicted RBP17.07■□□□□ 0.32
HDAC6-229ENST00000486665 ADAMTS8Q9UP79 889 aa17.07■□□□□ 0.32
HDAC6-229ENST00000486665 NUDCQ9Y266 331 aa17.07■□□□□ 0.32
HDAC6-229ENST00000486665 U2AF1L5P0DN76 240 aaPredicted RBP17.06■□□□□ 0.32
HDAC6-229ENST00000486665 U2AF1Q01081 240 aaKnown RBP eCLIP17.06■□□□□ 0.32
HDAC6-229ENST00000486665 FAM9BQ8IZU0 186 aa17.06■□□□□ 0.32
HDAC6-229ENST00000486665 USHBP1Q8N6Y0 703 aa17.06■□□□□ 0.32
HDAC6-229ENST00000486665 PLSCR1O15162 318 aa17.05■□□□□ 0.32
HDAC6-229ENST00000486665 WDR43Q15061 677 aaKnown RBP eCLIP17.05■□□□□ 0.32
HDAC6-229ENST00000486665 AEBP1Q8IUX7 1158 aa17.05■□□□□ 0.32
HDAC6-229ENST00000486665 NLRP2Q9NX02 1062 aa17.05■□□□□ 0.32
HDAC6-229ENST00000486665 IGSF1Q8N6C5 1336 aa17.04■□□□□ 0.32
HDAC6-229ENST00000486665 KCNQ2O43526 872 aa17.04■□□□□ 0.32
HDAC6-229ENST00000486665 HMOX1P09601 288 aa17.04■□□□□ 0.32
HDAC6-229ENST00000486665 SULT6B1Q6IMI4 303 aa17.04■□□□□ 0.32
HDAC6-229ENST00000486665 BCL11BQ9C0K0 894 aaPredicted RBP17.04■□□□□ 0.32
HDAC6-229ENST00000486665 CARD10Q9BWT7 1032 aa17.03■□□□□ 0.32
HDAC6-229ENST00000486665 SPON1Q9HCB6 807 aa17.03■□□□□ 0.32
HDAC6-229ENST00000486665 BCL9O00512 1426 aa17.03■□□□□ 0.32
HDAC6-229ENST00000486665 RSPH6AQ9H0K4 717 aa17.01■□□□□ 0.31
HDAC6-229ENST00000486665 RGPD2P0DJD1 1756 aa17■□□□□ 0.31
HDAC6-229ENST00000486665 TNS2Q63HR2 1409 aa16.99■□□□□ 0.31
HDAC6-229ENST00000486665 FCHSD2O94868 740 aa16.99■□□□□ 0.31
HDAC6-229ENST00000486665 CCDC146Q8IYE0 955 aa16.99■□□□□ 0.31
HDAC6-229ENST00000486665 PPP1R1BQ9UD71 204 aaPredicted RBP16.99■□□□□ 0.31
HDAC6-229ENST00000486665 NHSQ6T4R5 1651 aa16.99■□□□□ 0.31
HDAC6-229ENST00000486665 NCAPD2Q15021 1401 aa16.98■□□□□ 0.31
HDAC6-229ENST00000486665 ZBTB7AO95365 584 aa16.98■□□□□ 0.31
HDAC6-229ENST00000486665 PLEKHF1Q96S99 279 aa16.98■□□□□ 0.31
HDAC6-229ENST00000486665 CDCA7Q9BWT1 371 aaPredicted RBP16.98■□□□□ 0.31
HDAC6-229ENST00000486665 KDRP35968 1356 aa16.98■□□□□ 0.31
HDAC6-229ENST00000486665 UTRNP46939 3433 aa16.97■□□□□ 0.31
HDAC6-229ENST00000486665 YY1P25490 414 aa16.97■□□□□ 0.31
HDAC6-229ENST00000486665 PRKAR2BP31323 418 aa16.97■□□□□ 0.31
HDAC6-229ENST00000486665 TXNRD1Q16881 649 aa16.97■□□□□ 0.31
HDAC6-229ENST00000486665 PHACTR3Q96KR7 559 aa16.97■□□□□ 0.31
HDAC6-229ENST00000486665 EXOC5O00471 708 aa16.96■□□□□ 0.31
HDAC6-229ENST00000486665 PTGER2P43116 358 aa16.96■□□□□ 0.31
HDAC6-229ENST00000486665 FAM208AQ9UK61 1670 aaKnown RBP16.95■□□□□ 0.3
HDAC6-229ENST00000486665 SENP3-EIF4A1A0A087X0R7 540 aa16.95■□□□□ 0.3
HDAC6-229ENST00000486665 ACSBG1Q96GR2 724 aa16.95■□□□□ 0.3
HDAC6-229ENST00000486665 BTAF1O14981 1849 aa16.95■□□□□ 0.3
HDAC6-229ENST00000486665 PAPPAQ13219 1627 aa16.95■□□□□ 0.3
HDAC6-229ENST00000486665 RUNDC1Q96C34 613 aa16.94■□□□□ 0.3
HDAC6-229ENST00000486665 ATF5Q9Y2D1 282 aaPredicted RBP16.94■□□□□ 0.3
HDAC6-229ENST00000486665 TATP17735 454 aaPredicted RBP16.93■□□□□ 0.3
HDAC6-229ENST00000486665 RAPGEF4Q8WZA2 1011 aa16.93■□□□□ 0.3
HDAC6-229ENST00000486665 PNNQ9H307 717 aaKnown RBP16.93■□□□□ 0.3
HDAC6-229ENST00000486665 MEGF6O75095 1541 aa16.92■□□□□ 0.3
HDAC6-229ENST00000486665 IL2RBP14784 551 aa16.92■□□□□ 0.3
HDAC6-229ENST00000486665 SLC15A2Q16348 729 aa16.92■□□□□ 0.3
HDAC6-229ENST00000486665 APAF1O14727 1248 aa16.91■□□□□ 0.3
HDAC6-229ENST00000486665 MTHFSDQ2M296 383 aaKnown RBP16.91■□□□□ 0.3
HDAC6-229ENST00000486665 STK32BQ9NY57 414 aa16.91■□□□□ 0.3
HDAC6-229ENST00000486665 KAT6BQ8WYB5 2073 aa16.9■□□□□ 0.3
HDAC6-229ENST00000486665 PLEKHO1Q53GL0 409 aaPredicted RBP16.89■□□□□ 0.29
HDAC6-229ENST00000486665 SGIP1Q9BQI5 828 aa16.89■□□□□ 0.29
HDAC6-229ENST00000486665 RRP7AQ9Y3A4 280 aaKnown RBP16.89■□□□□ 0.29
HDAC6-229ENST00000486665 MAPK8IP3Q9UPT6 1336 aa16.89■□□□□ 0.29
HDAC6-229ENST00000486665 TMPOP42166 694 aaKnown RBP16.88■□□□□ 0.29
HDAC6-229ENST00000486665 ZNF827Q17R98 1081 aa16.88■□□□□ 0.29
HDAC6-229ENST00000486665 NEFMP07197 916 aa16.87■□□□□ 0.29
HDAC6-229ENST00000486665 NFE2L2Q16236 605 aa16.87■□□□□ 0.29
HDAC6-229ENST00000486665 AMOTQ4VCS5 1084 aa16.87■□□□□ 0.29
HDAC6-229ENST00000486665 ZCRB1Q8TBF4 217 aaKnown RBP16.87■□□□□ 0.29
HDAC6-229ENST00000486665 FHDC1Q9C0D6 1143 aaPredicted RBP16.87■□□□□ 0.29
HDAC6-229ENST00000486665 LRRC4BQ9NT99 713 aa16.87■□□□□ 0.29
HDAC6-229ENST00000486665 SHANK3Q9BYB0 1731 aa16.87■□□□□ 0.29
HDAC6-229ENST00000486665 NEUROD2Q15784 382 aa16.86■□□□□ 0.29
HDAC6-229ENST00000486665 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.86■□□□□ 0.296e-7■□□□□ 10.3
HDAC6-229ENST00000486665 SPG7Q9UQ90 795 aa16.86■□□□□ 0.29
HDAC6-229ENST00000486665 SALL2Q9Y467 1007 aaPredicted RBP16.86■□□□□ 0.29
HDAC6-229ENST00000486665 TUBGCP6Q96RT7 1819 aa16.86■□□□□ 0.29
HDAC6-229ENST00000486665 RIPK4P57078 832 aa16.85■□□□□ 0.29
HDAC6-229ENST00000486665 ZNF530Q6P9A1 599 aaPredicted RBP16.85■□□□□ 0.29
HDAC6-229ENST00000486665 GAS2L2Q8NHY3 880 aa16.85■□□□□ 0.29
HDAC6-229ENST00000486665 SYT17Q9BSW7 474 aa16.85■□□□□ 0.29
HDAC6-229ENST00000486665 CYP27B1O15528 508 aa16.84■□□□□ 0.29
HDAC6-229ENST00000486665 DDX54Q8TDD1 881 aaKnown RBP16.84■□□□□ 0.29
HDAC6-229ENST00000486665 MTFR1LQ9H019 292 aa16.84■□□□□ 0.29
HDAC6-229ENST00000486665 DOT1LQ8TEK3 1739 aa16.84■□□□□ 0.29
HDAC6-229ENST00000486665 HNRNPUQ00839 825 aaKnown RBP eCLIP16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms