RNA–Protein interactions for RNA: ENST00000469585.5

PTCD3-208, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-208ENST00000469585 USP17L1Q7RTZ2 530 aa10.24□□□□□ -0.77
PTCD3-208ENST00000469585 SNAPC4Q5SXM2 1469 aa10.23□□□□□ -0.77
PTCD3-208ENST00000469585 ADH1CP00326 375 aa10.23□□□□□ -0.77
PTCD3-208ENST00000469585 CCDC125Q86Z20 511 aa10.23□□□□□ -0.77
PTCD3-208ENST00000469585 ARXQ96QS3 562 aa10.23□□□□□ -0.77
PTCD3-208ENST00000469585 PBRM1Q86U86 1689 aa10.22□□□□□ -0.77
PTCD3-208ENST00000469585 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.22□□□□□ -0.77
PTCD3-208ENST00000469585 LZTS3O60299 673 aaPredicted RBP10.22□□□□□ -0.77
PTCD3-208ENST00000469585 PPP1R15AO75807 674 aaPredicted RBP10.22□□□□□ -0.77
PTCD3-208ENST00000469585 RGS20O76081 388 aa10.22□□□□□ -0.77
PTCD3-208ENST00000469585 FSHRP23945 695 aa10.22□□□□□ -0.77
PTCD3-208ENST00000469585 TRIM67Q6ZTA4 783 aa10.22□□□□□ -0.77
PTCD3-208ENST00000469585 DEPDC4Q8N2C3 294 aa10.22□□□□□ -0.77
PTCD3-208ENST00000469585 PBXIP1Q96AQ6 731 aa10.22□□□□□ -0.77
PTCD3-208ENST00000469585 NCOA4Q13772 614 aa10.21□□□□□ -0.77
PTCD3-208ENST00000469585 KANK4Q5T7N3 995 aaPredicted RBP10.21□□□□□ -0.77
PTCD3-208ENST00000469585 SNIP1Q8TAD8 396 aaKnown RBP10.21□□□□□ -0.77
PTCD3-208ENST00000469585 CDCA7Q9BWT1 371 aaPredicted RBP10.21□□□□□ -0.77
PTCD3-208ENST00000469585 DOLKQ9UPQ8 538 aa10.21□□□□□ -0.77
PTCD3-208ENST00000469585 SYNJ2O15056 1496 aa10.21□□□□□ -0.78
PTCD3-208ENST00000469585 ERVH48-1M5A8F1 160 aa10.2□□□□□ -0.78
PTCD3-208ENST00000469585 RAB15P59190 212 aa10.2□□□□□ -0.78
PTCD3-208ENST00000469585 NR5A1Q13285 461 aa10.2□□□□□ -0.78
PTCD3-208ENST00000469585 ERICH3Q5RHP9 1530 aa10.2□□□□□ -0.78
PTCD3-208ENST00000469585 ABCA5Q8WWZ7 1642 aa10.2□□□□□ -0.78
PTCD3-208ENST00000469585 TNFRSF10AO00220 468 aa10.19□□□□□ -0.78
PTCD3-208ENST00000469585 ALDH1A1P00352 501 aa10.19□□□□□ -0.78
PTCD3-208ENST00000469585 PRR20EP86478 221 aa10.19□□□□□ -0.78
PTCD3-208ENST00000469585 PRR20CP86479 221 aa10.19□□□□□ -0.78
PTCD3-208ENST00000469585 PRR20DP86480 221 aa10.19□□□□□ -0.78
PTCD3-208ENST00000469585 PRR20BP86481 221 aa10.19□□□□□ -0.78
PTCD3-208ENST00000469585 PRR20AP86496 221 aa10.19□□□□□ -0.78
PTCD3-208ENST00000469585 TOR4AQ9NXH8 423 aa10.19□□□□□ -0.78
PTCD3-208ENST00000469585 PCDHB11Q9Y5F2 797 aa10.19□□□□□ -0.78
PTCD3-208ENST00000469585 NR3C2P08235 984 aa10.18□□□□□ -0.78
PTCD3-208ENST00000469585 VRTNQ9H8Y1 702 aa10.18□□□□□ -0.78
PTCD3-208ENST00000469585 FHAD1B1AJZ9 1412 aa10.17□□□□□ -0.78
PTCD3-208ENST00000469585 CHD1O14646 1710 aa10.17□□□□□ -0.78
PTCD3-208ENST00000469585 DHX9Q08211 1270 aaKnown RBP10.17□□□□□ -0.78
PTCD3-208ENST00000469585 EML3Q32P44 896 aa10.17□□□□□ -0.78
PTCD3-208ENST00000469585 CDCA8Q53HL2 280 aa10.17□□□□□ -0.78
PTCD3-208ENST00000469585 CCDC116Q8IYX3 515 aa10.17□□□□□ -0.78
PTCD3-208ENST00000469585 MKRN1Q9UHC7 482 aaKnown RBP10.17□□□□□ -0.78
PTCD3-208ENST00000469585 J3QL48 77 aa10.16□□□□□ -0.78
PTCD3-208ENST00000469585 OXLD1Q5BKU9 147 aa10.16□□□□□ -0.78
PTCD3-208ENST00000469585 HOMEZQ8IX15 550 aa10.16□□□□□ -0.78
PTCD3-208ENST00000469585 CYP4X1Q8N118 509 aa10.16□□□□□ -0.78
PTCD3-208ENST00000469585 TMPRSS4Q9NRS4 437 aa10.16□□□□□ -0.78
PTCD3-208ENST00000469585 TTC24A2A3L6 582 aaPredicted RBP10.15□□□□□ -0.78
PTCD3-208ENST00000469585 NNTQ13423 1086 aa10.15□□□□□ -0.78
PTCD3-208ENST00000469585 PPP1R26Q5T8A7 1209 aaPredicted RBP10.15□□□□□ -0.78
PTCD3-208ENST00000469585 ATP5J2-PTCD1G3V325 749 aa10.14□□□□□ -0.79
PTCD3-208ENST00000469585 ATG7O95352 703 aa10.14□□□□□ -0.79
PTCD3-208ENST00000469585 SCTRP47872 440 aa10.14□□□□□ -0.79
PTCD3-208ENST00000469585 ERVK-9P63128 1117 aa10.14□□□□□ -0.79
PTCD3-208ENST00000469585 USP4Q13107 963 aa10.14□□□□□ -0.79
PTCD3-208ENST00000469585 NOD1Q9Y239 953 aa10.14□□□□□ -0.79
PTCD3-208ENST00000469585 WASF2Q9Y6W5 498 aa10.14□□□□□ -0.79
PTCD3-208ENST00000469585 CUL7Q14999 1698 aa10.14□□□□□ -0.79
PTCD3-208ENST00000469585 LILRA1O75019 489 aa10.13□□□□□ -0.79
PTCD3-208ENST00000469585 SMPD1P17405 629 aa10.13□□□□□ -0.79
PTCD3-208ENST00000469585 FAM9AQ8IZU1 332 aaPredicted RBP10.13□□□□□ -0.79
PTCD3-208ENST00000469585 ZNF784Q8NCA9 323 aaPredicted RBP10.13□□□□□ -0.79
PTCD3-208ENST00000469585 ADAMTS12P58397 1594 aa10.13□□□□□ -0.79
PTCD3-208ENST00000469585 ACIN1Q9UKV3 1341 aaKnown RBP10.12□□□□□ -0.79
PTCD3-208ENST00000469585 GRIN2AQ12879 1464 aa10.12□□□□□ -0.79
PTCD3-208ENST00000469585 FAM196BA6NMK8 535 aa10.12□□□□□ -0.79
PTCD3-208ENST00000469585 CLDN10P78369 228 aa10.12□□□□□ -0.79
PTCD3-208ENST00000469585 CRTC2Q53ET0 693 aaPredicted RBP10.12□□□□□ -0.79
PTCD3-208ENST00000469585 CC2D2BQ6DHV5 1058 aa10.12□□□□□ -0.79
PTCD3-208ENST00000469585 SIRT1Q96EB6 747 aa10.12□□□□□ -0.79
PTCD3-208ENST00000469585 KLF16Q9BXK1 252 aaPredicted RBP10.12□□□□□ -0.79
PTCD3-208ENST00000469585 EMILIN1Q9Y6C2 1016 aa10.12□□□□□ -0.79
PTCD3-208ENST00000469585 ZBTB7BO15156 539 aaPredicted RBP10.11□□□□□ -0.79
PTCD3-208ENST00000469585 PTK7Q13308 1070 aa10.11□□□□□ -0.79
PTCD3-208ENST00000469585 TRIM50Q86XT4 487 aa10.11□□□□□ -0.79
PTCD3-208ENST00000469585 OGFOD1Q8N543 542 aa10.11□□□□□ -0.79
PTCD3-208ENST00000469585 CYLDQ9NQC7 956 aa10.11□□□□□ -0.79
PTCD3-208ENST00000469585 PCDHGA11Q9Y5H2 935 aa10.11□□□□□ -0.79
PTCD3-208ENST00000469585 RASA1P20936 1047 aa10.1□□□□□ -0.79
PTCD3-208ENST00000469585 GTF2IP78347 998 aa10.1□□□□□ -0.79
PTCD3-208ENST00000469585 MYT1Q01538 1121 aa10.1□□□□□ -0.79
PTCD3-208ENST00000469585 ELOAQ14241 798 aaKnown RBP10.1□□□□□ -0.79
PTCD3-208ENST00000469585 PGPEP1Q9NXJ5 209 aa10.1□□□□□ -0.79
PTCD3-208ENST00000469585 CARMIL1Q5VZK9 1371 aa10.1□□□□□ -0.79
PTCD3-208ENST00000469585 EEA1Q15075 1411 aa10.09□□□□□ -0.79
PTCD3-208ENST00000469585 USP17L15C9J2P7 530 aa10.09□□□□□ -0.79
PTCD3-208ENST00000469585 USP17L10C9JJH3 530 aa10.09□□□□□ -0.79
PTCD3-208ENST00000469585 USP17L13C9JLJ4 530 aa10.09□□□□□ -0.79
PTCD3-208ENST00000469585 USP17L12C9JPN9 530 aa10.09□□□□□ -0.79
PTCD3-208ENST00000469585 USP17L11C9JVI0 530 aa10.09□□□□□ -0.79
PTCD3-208ENST00000469585 USP17L21D6R901 530 aa10.09□□□□□ -0.79
PTCD3-208ENST00000469585 USP17L18D6R9N7 530 aa10.09□□□□□ -0.79
PTCD3-208ENST00000469585 USP17L22D6RA61 530 aa10.09□□□□□ -0.79
PTCD3-208ENST00000469585 USP17L17D6RBQ6 530 aa10.09□□□□□ -0.79
PTCD3-208ENST00000469585 USP17L19D6RCP7 530 aa10.09□□□□□ -0.79
PTCD3-208ENST00000469585 USP17L20D6RJB6 530 aa10.09□□□□□ -0.79
PTCD3-208ENST00000469585 MYCP01106 439 aaPredicted RBP10.09□□□□□ -0.79
PTCD3-208ENST00000469585 USP17L24Q0WX57 530 aa10.09□□□□□ -0.79
PTCD3-208ENST00000469585 RETREG2Q8NC44 543 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 172.5 ms