RNA–Protein interactions for RNA: ENST00000468949.1

HDAC6-216, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-216ENST00000468949 POLA2Q14181 598 aa10.81□□□□□ -0.68
HDAC6-216ENST00000468949 FAM98CQ17RN3 349 aaKnown RBP10.81□□□□□ -0.68
HDAC6-216ENST00000468949 EIF4A2Q14240 407 aaKnown RBP10.8□□□□□ -0.68
HDAC6-216ENST00000468949 FAM9BQ8IZU0 186 aa10.8□□□□□ -0.68
HDAC6-216ENST00000468949 NLRP2Q9NX02 1062 aa10.8□□□□□ -0.68
HDAC6-216ENST00000468949 TNS1Q9HBL0 1735 aaKnown RBP10.8□□□□□ -0.68
HDAC6-216ENST00000468949 ERBB3P21860 1342 aa10.8□□□□□ -0.68
HDAC6-216ENST00000468949 COL3A1P02461 1466 aaPredicted RBP10.8□□□□□ -0.68
HDAC6-216ENST00000468949 TOM1L2Q6ZVM7 507 aa10.79□□□□□ -0.68
HDAC6-216ENST00000468949 KRT27Q7Z3Y8 459 aa10.79□□□□□ -0.68
HDAC6-216ENST00000468949 PNNQ9H307 717 aaKnown RBP10.79□□□□□ -0.68
HDAC6-216ENST00000468949 EP400Q96L91 3159 aa10.78□□□□□ -0.68
HDAC6-216ENST00000468949 ABCB7O75027 752 aa10.78□□□□□ -0.68
HDAC6-216ENST00000468949 LARP1Q6PKG0 1096 aaKnown RBP10.78□□□□□ -0.68
HDAC6-216ENST00000468949 BARGINQ6ZT62 677 aa10.78□□□□□ -0.68
HDAC6-216ENST00000468949 WDR17Q8IZU2 1322 aa10.78□□□□□ -0.68
HDAC6-216ENST00000468949 MAPK8IP3Q9UPT6 1336 aa10.78□□□□□ -0.68
HDAC6-216ENST00000468949 IL13P35225 146 aa10.77□□□□□ -0.69
HDAC6-216ENST00000468949 CCDC184Q52MB2 194 aa10.77□□□□□ -0.69
HDAC6-216ENST00000468949 CCDC125Q86Z20 511 aa10.77□□□□□ -0.69
HDAC6-216ENST00000468949 TCP11L2Q8N4U5 519 aa10.77□□□□□ -0.69
HDAC6-216ENST00000468949 USP35Q9P2H5 1018 aa10.77□□□□□ -0.69
HDAC6-216ENST00000468949 AXIN2Q9Y2T1 843 aa10.77□□□□□ -0.69
HDAC6-216ENST00000468949 THRAP3Q9Y2W1 955 aaKnown RBP10.77□□□□□ -0.69
HDAC6-216ENST00000468949 HMOX1P09601 288 aa10.76□□□□□ -0.69
HDAC6-216ENST00000468949 SULT6B1Q6IMI4 303 aa10.75□□□□□ -0.69
HDAC6-216ENST00000468949 USHBP1Q8N6Y0 703 aa10.75□□□□□ -0.69
HDAC6-216ENST00000468949 RAPGEF4Q8WZA2 1011 aa10.75□□□□□ -0.69
HDAC6-216ENST00000468949 EYA1Q99502 592 aa10.75□□□□□ -0.69
HDAC6-216ENST00000468949 IGSF1Q8N6C5 1336 aa10.75□□□□□ -0.69
HDAC6-216ENST00000468949 DISP2A7MBM2 1401 aa10.75□□□□□ -0.69
HDAC6-216ENST00000468949 TNS2Q63HR2 1409 aa10.75□□□□□ -0.69
HDAC6-216ENST00000468949 MKRN4PQ13434 485 aaPredicted RBP10.74□□□□□ -0.69
HDAC6-216ENST00000468949 SF3B2Q13435 895 aaKnown RBP10.74□□□□□ -0.69
HDAC6-216ENST00000468949 PNISRQ8TF01 805 aaKnown RBP10.74□□□□□ -0.69
HDAC6-216ENST00000468949 CARD10Q9BWT7 1032 aa10.74□□□□□ -0.69
HDAC6-216ENST00000468949 OVOS2A0A0G2JMS6 1433 aa10.74□□□□□ -0.69
HDAC6-216ENST00000468949 RGPD3A6NKT7 1758 aaPredicted RBP10.73□□□□□ -0.69
HDAC6-216ENST00000468949 RGPD4Q7Z3J3 1758 aa10.73□□□□□ -0.69
HDAC6-216ENST00000468949 FCHSD2O94868 740 aa10.73□□□□□ -0.69
HDAC6-216ENST00000468949 TATP17735 454 aaPredicted RBP10.73□□□□□ -0.69
HDAC6-216ENST00000468949 PRKAR2BP31323 418 aa10.73□□□□□ -0.69
HDAC6-216ENST00000468949 NBPF6Q5VWK0 638 aa10.73□□□□□ -0.69
HDAC6-216ENST00000468949 NBPF4Q96M43 638 aa10.73□□□□□ -0.69
HDAC6-216ENST00000468949 ADAMTS8Q9UP79 889 aa10.73□□□□□ -0.69
HDAC6-216ENST00000468949 AEBP1Q8IUX7 1158 aa10.72□□□□□ -0.69
HDAC6-216ENST00000468949 CCDC146Q8IYE0 955 aa10.72□□□□□ -0.69
HDAC6-216ENST00000468949 RUNDC1Q96C34 613 aa10.72□□□□□ -0.69
HDAC6-216ENST00000468949 CDCA7Q9BWT1 371 aaPredicted RBP10.72□□□□□ -0.69
HDAC6-216ENST00000468949 IL2RBP14784 551 aa10.71□□□□□ -0.69
HDAC6-216ENST00000468949 KDRP35968 1356 aa10.71□□□□□ -0.69
HDAC6-216ENST00000468949 PDE3BQ13370 1112 aa10.71□□□□□ -0.69
HDAC6-216ENST00000468949 RREB1Q92766 1687 aa10.71□□□□□ -0.69
HDAC6-216ENST00000468949 RSPH6AQ9H0K4 717 aa10.71□□□□□ -0.69
HDAC6-216ENST00000468949 BAG6P46379 1132 aa10.7□□□□□ -0.7
HDAC6-216ENST00000468949 PLEKHO1Q53GL0 409 aaPredicted RBP10.7□□□□□ -0.7
HDAC6-216ENST00000468949 FAM196AQ6ZSG2 479 aa10.7□□□□□ -0.7
HDAC6-216ENST00000468949 GAS2L2Q8NHY3 880 aa10.7□□□□□ -0.7
HDAC6-216ENST00000468949 YTHDC1Q96MU7 727 aaKnown RBP10.7□□□□□ -0.7
HDAC6-216ENST00000468949 SBF2Q86WG5 1849 aa10.7□□□□□ -0.7
HDAC6-216ENST00000468949 NHSQ6T4R5 1651 aa10.69□□□□□ -0.7
HDAC6-216ENST00000468949 NCAPD2Q15021 1401 aa10.69□□□□□ -0.7
HDAC6-216ENST00000468949 PLEKHG2Q9H7P9 1386 aa10.69□□□□□ -0.7
HDAC6-216ENST00000468949 HNRNPUQ00839 825 aaKnown RBP eCLIP10.69□□□□□ -0.7
HDAC6-216ENST00000468949 DDB1Q16531 1140 aa10.69□□□□□ -0.7
HDAC6-216ENST00000468949 AMOTQ4VCS5 1084 aa10.69□□□□□ -0.7
HDAC6-216ENST00000468949 C1orf141Q5JVX7 400 aa10.69□□□□□ -0.7
HDAC6-216ENST00000468949 FAM182BQ5T319 152 aa10.69□□□□□ -0.7
HDAC6-216ENST00000468949 SPG7Q9UQ90 795 aa10.69□□□□□ -0.7
HDAC6-216ENST00000468949 BCL9O00512 1426 aa10.68□□□□□ -0.7
HDAC6-216ENST00000468949 RGPD2P0DJD1 1756 aa10.68□□□□□ -0.7
HDAC6-216ENST00000468949 NUP188Q5SRE5 1749 aa10.68□□□□□ -0.7
HDAC6-216ENST00000468949 LMOD3Q0VAK6 560 aa10.68□□□□□ -0.7
HDAC6-216ENST00000468949 MEGF6O75095 1541 aa10.68□□□□□ -0.7
HDAC6-216ENST00000468949 PCDH11XQ9BZA7 1347 aa10.67□□□□□ -0.7
HDAC6-216ENST00000468949 PCDH11YQ9BZA8 1340 aa10.67□□□□□ -0.7
HDAC6-216ENST00000468949 NEUROD2Q15784 382 aa10.67□□□□□ -0.7
HDAC6-216ENST00000468949 ZNF530Q6P9A1 599 aaPredicted RBP10.67□□□□□ -0.7
HDAC6-216ENST00000468949 DEFB132Q7Z7B7 95 aa10.67□□□□□ -0.7
HDAC6-216ENST00000468949 RTF1Q92541 710 aaKnown RBP10.67□□□□□ -0.7
HDAC6-216ENST00000468949 SHANK3Q9BYB0 1731 aa10.67□□□□□ -0.7
HDAC6-216ENST00000468949 APAF1O14727 1248 aa10.66□□□□□ -0.7
HDAC6-216ENST00000468949 NFE2L2Q16236 605 aa10.66□□□□□ -0.7
HDAC6-216ENST00000468949 NGEFQ8N5V2 710 aa10.66□□□□□ -0.7
HDAC6-216ENST00000468949 SALL2Q9Y467 1007 aaPredicted RBP10.66□□□□□ -0.7
HDAC6-216ENST00000468949 DOT1LQ8TEK3 1739 aa10.65□□□□□ -0.7
HDAC6-216ENST00000468949 EXOC5O00471 708 aa10.65□□□□□ -0.7
HDAC6-216ENST00000468949 TRIM37O94972 964 aa10.65□□□□□ -0.7
HDAC6-216ENST00000468949 HSP90AB1P08238 724 aaKnown RBP10.65□□□□□ -0.7
HDAC6-216ENST00000468949 DSG3P32926 999 aa10.65□□□□□ -0.7
HDAC6-216ENST00000468949 ZCRB1Q8TBF4 217 aaKnown RBP10.65□□□□□ -0.7
HDAC6-216ENST00000468949 PLEKHF1Q96S99 279 aa10.65□□□□□ -0.7
HDAC6-216ENST00000468949 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.65□□□□□ -0.71e-11■■□□□ 11.5
HDAC6-216ENST00000468949 RRP7AQ9Y3A4 280 aaKnown RBP10.65□□□□□ -0.7
HDAC6-216ENST00000468949 MAP3K5Q99683 1374 aa10.65□□□□□ -0.71
HDAC6-216ENST00000468949 PKD1L3Q7Z443 1732 aa10.64□□□□□ -0.71
HDAC6-216ENST00000468949 SENP3-EIF4A1A0A087X0R7 540 aa10.64□□□□□ -0.71
HDAC6-216ENST00000468949 TMPOP42166 694 aaKnown RBP10.64□□□□□ -0.71
HDAC6-216ENST00000468949 RIPK4P57078 832 aa10.64□□□□□ -0.71
HDAC6-216ENST00000468949 CACNB1Q02641 598 aaPredicted RBP10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms