RNA–Protein interactions for RNA: ENST00000461433.1

SSBP1-202, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 1 (best)

Gene SSBP1, Length 1,694 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-202ENST00000461433 U2AF1L5P0DN76 240 aaPredicted RBP15.09■□□□□ 0.01
SSBP1-202ENST00000461433 U2AF1Q01081 240 aaKnown RBP eCLIP15.09■□□□□ 0.01
SSBP1-202ENST00000461433 A0A0G2JS52 829 aa15.08■□□□□ 0
SSBP1-202ENST00000461433 TATP17735 454 aaPredicted RBP15.08■□□□□ 0
SSBP1-202ENST00000461433 MYT1Q01538 1121 aa15.08■□□□□ 0
SSBP1-202ENST00000461433 DDB1Q16531 1140 aa15.08■□□□□ 0
SSBP1-202ENST00000461433 MIER1Q8N108 512 aa15.08■□□□□ 0
SSBP1-202ENST00000461433 RSPH6AQ9H0K4 717 aa15.08■□□□□ 0
SSBP1-202ENST00000461433 TNS2Q63HR2 1409 aa15.07■□□□□ 0
SSBP1-202ENST00000461433 EXOC5O00471 708 aa15.07■□□□□ 0
SSBP1-202ENST00000461433 FCHSD2O94868 740 aa15.06■□□□□ 0
SSBP1-202ENST00000461433 ZCRB1Q8TBF4 217 aaKnown RBP15.06■□□□□ 0
SSBP1-202ENST00000461433 MRS2Q9HD23 443 aa15.06■□□□□ 0
SSBP1-202ENST00000461433 PLEKHG2Q9H7P9 1386 aa15.06■□□□□ 0
SSBP1-202ENST00000461433 PNISRQ8TF01 805 aaKnown RBP15.06■□□□□ 0
SSBP1-202ENST00000461433 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.06■□□□□ 0
SSBP1-202ENST00000461433 KRT27Q7Z3Y8 459 aa15.05■□□□□ -0
SSBP1-202ENST00000461433 MARCH10Q8NA82 808 aaPredicted RBP15.05■□□□□ -0
SSBP1-202ENST00000461433 ADAMTS8Q9UP79 889 aa15.05■□□□□ -0
SSBP1-202ENST00000461433 PRKAR2BP31323 418 aa15.04■□□□□ -0
SSBP1-202ENST00000461433 PDE3BQ13370 1112 aa15.04■□□□□ -0
SSBP1-202ENST00000461433 FAM182BQ5T319 152 aa15.04■□□□□ -0
SSBP1-202ENST00000461433 PHACTR3Q96KR7 559 aa15.04■□□□□ -0
SSBP1-202ENST00000461433 PLEKHF1Q96S99 279 aa15.04■□□□□ -0
SSBP1-202ENST00000461433 CCER2I3L3R5 266 aa15.03■□□□□ -0
SSBP1-202ENST00000461433 CYP27B1O15528 508 aa15.03■□□□□ -0
SSBP1-202ENST00000461433 SPG7Q9UQ90 795 aa15.03■□□□□ -0
SSBP1-202ENST00000461433 WDR43Q15061 677 aaKnown RBP eCLIP15.02□□□□□ -0.01
SSBP1-202ENST00000461433 PLEKHO1Q53GL0 409 aaPredicted RBP15.02□□□□□ -0.01
SSBP1-202ENST00000461433 DDX54Q8TDD1 881 aaKnown RBP15.02□□□□□ -0.01
SSBP1-202ENST00000461433 EP400Q96L91 3159 aa15.01□□□□□ -0.01
SSBP1-202ENST00000461433 MTHFSDQ2M296 383 aaKnown RBP15.01□□□□□ -0.01
SSBP1-202ENST00000461433 AMOTQ4VCS5 1084 aa15.01□□□□□ -0.01
SSBP1-202ENST00000461433 PCDH11XQ9BZA7 1347 aa15.01□□□□□ -0.01
SSBP1-202ENST00000461433 PCDH11YQ9BZA8 1340 aa15.01□□□□□ -0.01
SSBP1-202ENST00000461433 SBF2Q86WG5 1849 aa15.01□□□□□ -0.01
SSBP1-202ENST00000461433 BCL9O00512 1426 aa15□□□□□ -0.01
SSBP1-202ENST00000461433 PHKG2P15735 406 aa15□□□□□ -0.01
SSBP1-202ENST00000461433 NKX1-1Q15270 411 aaPredicted RBP14.99□□□□□ -0.01
SSBP1-202ENST00000461433 ZNF530Q6P9A1 599 aaPredicted RBP14.99□□□□□ -0.01
SSBP1-202ENST00000461433 IFNL2Q8IZJ0 200 aa14.98□□□□□ -0.01
SSBP1-202ENST00000461433 DLG5Q8TDM6 1919 aa14.98□□□□□ -0.01
SSBP1-202ENST00000461433 TOGARAM1Q9Y4F4 1720 aa14.98□□□□□ -0.01
SSBP1-202ENST00000461433 VIRMAQ69YN4 1812 aaKnown RBP14.98□□□□□ -0.01
SSBP1-202ENST00000461433 FAM196AQ6ZSG2 479 aa14.97□□□□□ -0.01
SSBP1-202ENST00000461433 CCDC146Q8IYE0 955 aa14.97□□□□□ -0.01
SSBP1-202ENST00000461433 PNNQ9H307 717 aaKnown RBP14.97□□□□□ -0.01
SSBP1-202ENST00000461433 DOT1LQ8TEK3 1739 aa14.97□□□□□ -0.01
SSBP1-202ENST00000461433 RUNDC1Q96C34 613 aa14.97□□□□□ -0.01
SSBP1-202ENST00000461433 ADAMTS7Q9UKP4 1686 aa14.96□□□□□ -0.01
SSBP1-202ENST00000461433 AKAP4Q5JQC9 854 aa14.96□□□□□ -0.01
SSBP1-202ENST00000461433 GAS2L2Q8NHY3 880 aa14.96□□□□□ -0.01
SSBP1-202ENST00000461433 SCN11AQ9UI33 1791 aa14.95□□□□□ -0.02
SSBP1-202ENST00000461433 FAM9BQ8IZU0 186 aa14.95□□□□□ -0.02
SSBP1-202ENST00000461433 KDM6AO15550 1401 aaPredicted RBP14.95□□□□□ -0.02
SSBP1-202ENST00000461433 ITGB4P16144 1822 aa14.95□□□□□ -0.02
SSBP1-202ENST00000461433 NHSQ6T4R5 1651 aa14.94□□□□□ -0.02
SSBP1-202ENST00000461433 C1orf141Q5JVX7 400 aa14.94□□□□□ -0.02
SSBP1-202ENST00000461433 PTF1AQ7RTS3 328 aa14.94□□□□□ -0.02
SSBP1-202ENST00000461433 MAPK8IP3Q9UPT6 1336 aa14.94□□□□□ -0.02
SSBP1-202ENST00000461433 KCNQ2O43526 872 aa14.93□□□□□ -0.02
SSBP1-202ENST00000461433 NFE2L2Q16236 605 aa14.93□□□□□ -0.02
SSBP1-202ENST00000461433 MPRIPQ6WCQ1 1025 aa14.93□□□□□ -0.02
SSBP1-202ENST00000461433 KAT6BQ8WYB5 2073 aa14.93□□□□□ -0.02
SSBP1-202ENST00000461433 MAP3K5Q99683 1374 aa14.93□□□□□ -0.02
SSBP1-202ENST00000461433 GNAT3A8MTJ3 354 aa14.93□□□□□ -0.02
SSBP1-202ENST00000461433 TMPOP42166 694 aaKnown RBP14.93□□□□□ -0.02
SSBP1-202ENST00000461433 ACSBG1Q96GR2 724 aa14.93□□□□□ -0.02
SSBP1-202ENST00000461433 DCAF5Q96JK2 942 aa14.93□□□□□ -0.02
SSBP1-202ENST00000461433 LGR6Q9HBX8 967 aa14.93□□□□□ -0.02
SSBP1-202ENST00000461433 TNS1Q9HBL0 1735 aaKnown RBP14.92□□□□□ -0.02
SSBP1-202ENST00000461433 TRIM37O94972 964 aa14.92□□□□□ -0.02
SSBP1-202ENST00000461433 NEFMP07197 916 aa14.92□□□□□ -0.02
SSBP1-202ENST00000461433 HSP90AB1P08238 724 aaKnown RBP14.92□□□□□ -0.02
SSBP1-202ENST00000461433 RNMTO43148 476 aaKnown RBP14.91□□□□□ -0.02
SSBP1-202ENST00000461433 PRIM1P49642 420 aaKnown RBP14.91□□□□□ -0.02
SSBP1-202ENST00000461433 IL17REQ8NFR9 667 aa14.91□□□□□ -0.02
SSBP1-202ENST00000461433 APAF1O14727 1248 aa14.9□□□□□ -0.02
SSBP1-202ENST00000461433 RRP7AQ9Y3A4 280 aaKnown RBP14.9□□□□□ -0.02
SSBP1-202ENST00000461433 BTAF1O14981 1849 aa14.9□□□□□ -0.02
SSBP1-202ENST00000461433 ERVV-2B6SEH9 535 aa14.9□□□□□ -0.02
SSBP1-202ENST00000461433 RIPK4P57078 832 aa14.9□□□□□ -0.02
SSBP1-202ENST00000461433 UPF1Q92900 1129 aaKnown RBP eCLIP14.9□□□□□ -0.02
SSBP1-202ENST00000461433 BCL11BQ9C0K0 894 aaPredicted RBP14.9□□□□□ -0.02
SSBP1-202ENST00000461433 CEMIPQ8WUJ3 1361 aa14.89□□□□□ -0.03
SSBP1-202ENST00000461433 MRC1P22897 1456 aa14.89□□□□□ -0.03
SSBP1-202ENST00000461433 HTATSF1O43719 755 aaKnown RBP14.89□□□□□ -0.03
SSBP1-202ENST00000461433 DCTN1Q14203 1278 aa14.89□□□□□ -0.03
SSBP1-202ENST00000461433 SIPA1L3O60292 1781 aaPredicted RBP14.89□□□□□ -0.03
SSBP1-202ENST00000461433 MCM10Q7L590 875 aa14.88□□□□□ -0.03
SSBP1-202ENST00000461433 TRIM35Q9UPQ4 493 aa14.88□□□□□ -0.03
SSBP1-202ENST00000461433 SENP3-EIF4A1A0A087X0R7 540 aa14.87□□□□□ -0.03
SSBP1-202ENST00000461433 NEUROD2Q15784 382 aa14.87□□□□□ -0.03
SSBP1-202ENST00000461433 PIGBQ92521 554 aa14.87□□□□□ -0.03
SSBP1-202ENST00000461433 SYTL4Q96C24 671 aaPredicted RBP14.87□□□□□ -0.03
SSBP1-202ENST00000461433 NFATC2IPQ8NCF5 419 aa14.87□□□□□ -0.03
SSBP1-202ENST00000461433 CCDC125Q86Z20 511 aa14.86□□□□□ -0.03
SSBP1-202ENST00000461433 RTF1Q92541 710 aaKnown RBP14.86□□□□□ -0.03
SSBP1-202ENST00000461433 THUMPD2Q9BTF0 503 aaKnown RBP14.86□□□□□ -0.03
SSBP1-202ENST00000461433 SLC52A2Q9HAB3 445 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms