RNA–Protein interactions for RNA: ENST00000446646.1

HDAC9-216, Transcript of histone deacetylase 9, humanhuman

TSL 4

Gene HDAC9, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-216ENST00000446646 ATP7BP35670 1465 aa10.64□□□□□ -0.71
HDAC9-216ENST00000446646 ZNF827Q17R98 1081 aa10.64□□□□□ -0.71
HDAC9-216ENST00000446646 MAMSTRQ6ZN01 415 aa10.64□□□□□ -0.71
HDAC9-216ENST00000446646 PARP4Q9UKK3 1724 aaKnown RBP10.64□□□□□ -0.71
HDAC9-216ENST00000446646 DHX57Q6P158 1386 aaKnown RBP10.64□□□□□ -0.71
HDAC9-216ENST00000446646 LMO7Q8WWI1 1683 aa10.63□□□□□ -0.71
HDAC9-216ENST00000446646 MKRN3Q13064 507 aaKnown RBP10.63□□□□□ -0.71
HDAC9-216ENST00000446646 COL13A1Q5TAT6 717 aaPredicted RBP10.63□□□□□ -0.71
HDAC9-216ENST00000446646 PPARGC1BQ86YN6 1023 aaKnown RBP10.63□□□□□ -0.71
HDAC9-216ENST00000446646 ZNF526Q8TF50 670 aaPredicted RBP10.63□□□□□ -0.71
HDAC9-216ENST00000446646 SCUBE2Q9NQ36 999 aa10.63□□□□□ -0.71
HDAC9-216ENST00000446646 LRRC37A3O60309 1634 aa10.62□□□□□ -0.71
HDAC9-216ENST00000446646 COL5A2P05997 1499 aaPredicted RBP10.62□□□□□ -0.71
HDAC9-216ENST00000446646 IRX5P78411 483 aaPredicted RBP10.62□□□□□ -0.71
HDAC9-216ENST00000446646 POGKQ9P215 609 aa10.62□□□□□ -0.71
HDAC9-216ENST00000446646 ANKRD30BQ9BXX2 1392 aa10.62□□□□□ -0.71
HDAC9-216ENST00000446646 DDB1Q16531 1140 aa10.61□□□□□ -0.71
HDAC9-216ENST00000446646 THRAP3Q9Y2W1 955 aaKnown RBP10.61□□□□□ -0.71
HDAC9-216ENST00000446646 TULP4Q9NRJ4 1543 aa10.6□□□□□ -0.71
HDAC9-216ENST00000446646 WASLO00401 505 aaPredicted RBP10.6□□□□□ -0.71
HDAC9-216ENST00000446646 RIOK3O14730 519 aaKnown RBP10.6□□□□□ -0.71
HDAC9-216ENST00000446646 DNAJC5GQ8N7S2 189 aa10.6□□□□□ -0.71
HDAC9-216ENST00000446646 OCEL1Q9H607 264 aa10.6□□□□□ -0.71
HDAC9-216ENST00000446646 CABP2Q9NPB3 220 aa10.6□□□□□ -0.71
HDAC9-216ENST00000446646 TRAK1Q9UPV9 953 aa10.6□□□□□ -0.71
HDAC9-216ENST00000446646 CPDO75976 1380 aa10.6□□□□□ -0.71
HDAC9-216ENST00000446646 RNF25Q96BH1 459 aaPredicted RBP10.59□□□□□ -0.71
HDAC9-216ENST00000446646 LRRC4BQ9NT99 713 aa10.59□□□□□ -0.71
HDAC9-216ENST00000446646 CRB1P82279 1406 aa10.58□□□□□ -0.72
HDAC9-216ENST00000446646 PAPPAQ13219 1627 aa10.58□□□□□ -0.72
HDAC9-216ENST00000446646 ZBTB7CA1YPR0 619 aa10.58□□□□□ -0.72
HDAC9-216ENST00000446646 GPBP1L1Q9HC44 474 aaPredicted RBP10.58□□□□□ -0.72
HDAC9-216ENST00000446646 USP19O94966 1318 aa10.58□□□□□ -0.72
HDAC9-216ENST00000446646 ADCY9O60503 1353 aa10.57□□□□□ -0.72
HDAC9-216ENST00000446646 ECM2O94769 699 aaPredicted RBP10.57□□□□□ -0.72
HDAC9-216ENST00000446646 NUDT16Q96DE0 195 aaKnown RBP10.57□□□□□ -0.72
HDAC9-216ENST00000446646 AXIN2Q9Y2T1 843 aa10.57□□□□□ -0.72
HDAC9-216ENST00000446646 BCL9O00512 1426 aa10.57□□□□□ -0.72
HDAC9-216ENST00000446646 AATKQ6ZMQ8 1374 aa10.56□□□□□ -0.72
HDAC9-216ENST00000446646 GCP02774 474 aa10.56□□□□□ -0.72
HDAC9-216ENST00000446646 ACSBG1Q96GR2 724 aa10.56□□□□□ -0.72
HDAC9-216ENST00000446646 ADGRB1O14514 1584 aa10.56□□□□□ -0.72
HDAC9-216ENST00000446646 ACEP12821 1306 aa10.56□□□□□ -0.72
HDAC9-216ENST00000446646 C11orf95C9JLR9 678 aaPredicted RBP10.55□□□□□ -0.72
HDAC9-216ENST00000446646 KIF3CO14782 793 aa10.55□□□□□ -0.72
HDAC9-216ENST00000446646 KCNQ4P56696 695 aa10.55□□□□□ -0.72
HDAC9-216ENST00000446646 HTRA3P83110 453 aa10.55□□□□□ -0.72
HDAC9-216ENST00000446646 ABTB2Q8N961 1025 aa10.55□□□□□ -0.72
HDAC9-216ENST00000446646 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.55□□□□□ -0.72
HDAC9-216ENST00000446646 TOM1L2Q6ZVM7 507 aa10.54□□□□□ -0.72
HDAC9-216ENST00000446646 PNPLA7Q6ZV29 1317 aa10.54□□□□□ -0.72
HDAC9-216ENST00000446646 POLR3AO14802 1390 aaPredicted RBP10.52□□□□□ -0.72
HDAC9-216ENST00000446646 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.52□□□□□ -0.73
HDAC9-216ENST00000446646 GRIN3BO60391 1043 aa10.52□□□□□ -0.73
HDAC9-216ENST00000446646 PRELPP51888 382 aa10.52□□□□□ -0.73
HDAC9-216ENST00000446646 PDCD7Q8N8D1 485 aaKnown RBP10.52□□□□□ -0.73
HDAC9-216ENST00000446646 ZFP91Q96JP5 570 aaPredicted RBP10.52□□□□□ -0.73
HDAC9-216ENST00000446646 WWC3Q9ULE0 1092 aa10.52□□□□□ -0.73
HDAC9-216ENST00000446646 EIF3AQ14152 1382 aaKnown RBP10.52□□□□□ -0.73
HDAC9-216ENST00000446646 POLD1P28340 1107 aa10.51□□□□□ -0.73
HDAC9-216ENST00000446646 CDK19Q9BWU1 502 aa10.51□□□□□ -0.73
HDAC9-216ENST00000446646 SLC34A2O95436 690 aa10.5□□□□□ -0.73
HDAC9-216ENST00000446646 TNS4Q8IZW8 715 aa10.5□□□□□ -0.73
HDAC9-216ENST00000446646 WDR17Q8IZU2 1322 aa10.5□□□□□ -0.73
HDAC9-216ENST00000446646 APLP1P51693 650 aa10.49□□□□□ -0.73
HDAC9-216ENST00000446646 MSL1Q68DK7 614 aa10.49□□□□□ -0.73
HDAC9-216ENST00000446646 TAOK2Q9UL54 1235 aa10.49□□□□□ -0.73
HDAC9-216ENST00000446646 TOPAZ1Q8N9V7 1692 aa10.49□□□□□ -0.73
HDAC9-216ENST00000446646 COL24A1Q17RW2 1714 aa10.49□□□□□ -0.73
HDAC9-216ENST00000446646 COL18A1P39060 1754 aa10.49□□□□□ -0.73
HDAC9-216ENST00000446646 WNK3Q9BYP7 1800 aa10.49□□□□□ -0.73
HDAC9-216ENST00000446646 PLEKHG3A1L390 1219 aa10.48□□□□□ -0.73
HDAC9-216ENST00000446646 EFCAB3Q8N7B9 438 aa10.48□□□□□ -0.73
HDAC9-216ENST00000446646 MPHOSPH9Q99550 1183 aa10.48□□□□□ -0.73
HDAC9-216ENST00000446646 USP6P35125 1406 aa10.48□□□□□ -0.73
HDAC9-216ENST00000446646 NHSQ6T4R5 1651 aa10.47□□□□□ -0.73
HDAC9-216ENST00000446646 AKAP12Q02952 1782 aa10.47□□□□□ -0.73
HDAC9-216ENST00000446646 EXOC5O00471 708 aa10.47□□□□□ -0.73
HDAC9-216ENST00000446646 PLCB2Q00722 1185 aa10.47□□□□□ -0.73
HDAC9-216ENST00000446646 NLRP13Q86W25 1043 aa10.47□□□□□ -0.73
HDAC9-216ENST00000446646 SLC16A10Q8TF71 515 aa10.47□□□□□ -0.73
HDAC9-216ENST00000446646 CARD10Q9BWT7 1032 aa10.47□□□□□ -0.73
HDAC9-216ENST00000446646 TUBGCP6Q96RT7 1819 aa10.47□□□□□ -0.73
HDAC9-216ENST00000446646 RGL2O15211 777 aa10.46□□□□□ -0.73
HDAC9-216ENST00000446646 SLAIN1Q8ND83 568 aa10.46□□□□□ -0.73
HDAC9-216ENST00000446646 TFCP2L1Q9NZI6 479 aa10.46□□□□□ -0.73
HDAC9-216ENST00000446646 BRD4O60885 1362 aaPredicted RBP10.46□□□□□ -0.74
HDAC9-216ENST00000446646 TNS2Q63HR2 1409 aa10.46□□□□□ -0.74
HDAC9-216ENST00000446646 BTAF1O14981 1849 aa10.45□□□□□ -0.74
HDAC9-216ENST00000446646 ARHGEF28Q8N1W1 1705 aaKnown RBP10.45□□□□□ -0.74
HDAC9-216ENST00000446646 SLIT3O75094 1523 aa10.45□□□□□ -0.74
HDAC9-216ENST00000446646 SOX12O15370 315 aa10.45□□□□□ -0.74
HDAC9-216ENST00000446646 COL23A1Q86Y22 540 aaPredicted RBP10.45□□□□□ -0.74
HDAC9-216ENST00000446646 L3MBTL3Q96JM7 780 aaPredicted RBP10.45□□□□□ -0.74
HDAC9-216ENST00000446646 CDCA7Q9BWT1 371 aaPredicted RBP10.45□□□□□ -0.74
HDAC9-216ENST00000446646 NLRP6P59044 892 aa10.44□□□□□ -0.74
HDAC9-216ENST00000446646 JMYQ8N9B5 988 aa10.44□□□□□ -0.74
HDAC9-216ENST00000446646 KLRG1Q96E93 195 aa10.44□□□□□ -0.74
HDAC9-216ENST00000446646 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.44□□□□□ -0.74
HDAC9-216ENST00000446646 ITSN1Q15811 1721 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms