RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 USP17L21D6R901 530 aa10.51□□□□□ -0.73
USP40-202ENST00000409945 USP17L18D6R9N7 530 aa10.51□□□□□ -0.73
USP40-202ENST00000409945 USP17L22D6RA61 530 aa10.51□□□□□ -0.73
USP40-202ENST00000409945 USP17L17D6RBQ6 530 aa10.51□□□□□ -0.73
USP40-202ENST00000409945 USP17L19D6RCP7 530 aa10.51□□□□□ -0.73
USP40-202ENST00000409945 USP17L20D6RJB6 530 aa10.51□□□□□ -0.73
USP40-202ENST00000409945 ZBTB24O43167 697 aaPredicted RBP10.51□□□□□ -0.73
USP40-202ENST00000409945 USP17L24Q0WX57 530 aa10.51□□□□□ -0.73
USP40-202ENST00000409945 TRMT44Q8IYL2 757 aaKnown RBP10.51□□□□□ -0.73
USP40-202ENST00000409945 DKK1O94907 266 aa10.5□□□□□ -0.73
USP40-202ENST00000409945 STAU1O95793 577 aaKnown RBP10.5□□□□□ -0.73
USP40-202ENST00000409945 NOVA2Q9UNW9 492 aaKnown RBP10.5□□□□□ -0.73
USP40-202ENST00000409945 DOLKQ9UPQ8 538 aa10.5□□□□□ -0.73
USP40-202ENST00000409945 PBRM1Q86U86 1689 aa10.5□□□□□ -0.73
USP40-202ENST00000409945 LGR5O75473 907 aa10.5□□□□□ -0.73
USP40-202ENST00000409945 RASA1P20936 1047 aa10.5□□□□□ -0.73
USP40-202ENST00000409945 SCNN1AP37088 669 aa10.5□□□□□ -0.73
USP40-202ENST00000409945 FAM69CQ0P6D2 419 aa10.5□□□□□ -0.73
USP40-202ENST00000409945 PCDH10Q9P2E7 1040 aa10.5□□□□□ -0.73
USP40-202ENST00000409945 CHD1O14646 1710 aa10.5□□□□□ -0.73
USP40-202ENST00000409945 CSB-PGBD3P0DP91 1061 aa10.49□□□□□ -0.73
USP40-202ENST00000409945 OGFOD1Q8N543 542 aa10.49□□□□□ -0.73
USP40-202ENST00000409945 KCTD15Q96SI1 283 aaPredicted RBP10.49□□□□□ -0.73
USP40-202ENST00000409945 SYNJ2O15056 1496 aa10.49□□□□□ -0.73
USP40-202ENST00000409945 ABCA5Q8WWZ7 1642 aa10.49□□□□□ -0.73
USP40-202ENST00000409945 INTS6LQ5JSJ4 861 aaKnown RBP10.48□□□□□ -0.73
USP40-202ENST00000409945 RC3H1Q5TC82 1133 aaKnown RBP10.48□□□□□ -0.73
USP40-202ENST00000409945 GRM5P41594 1212 aa10.48□□□□□ -0.73
USP40-202ENST00000409945 FAM196BA6NMK8 535 aa10.47□□□□□ -0.73
USP40-202ENST00000409945 ZBTB7BO15156 539 aaPredicted RBP10.47□□□□□ -0.73
USP40-202ENST00000409945 WNT7BP56706 349 aa10.47□□□□□ -0.73
USP40-202ENST00000409945 ARID5BQ14865 1188 aa10.47□□□□□ -0.73
USP40-202ENST00000409945 PHLDB3Q6NSJ2 640 aa10.47□□□□□ -0.73
USP40-202ENST00000409945 EHBP1Q8NDI1 1231 aa10.47□□□□□ -0.73
USP40-202ENST00000409945 PCDHB11Q9Y5F2 797 aa10.47□□□□□ -0.73
USP40-202ENST00000409945 SIAH2O43255 324 aa10.46□□□□□ -0.74
USP40-202ENST00000409945 GGCXP38435 758 aa10.46□□□□□ -0.74
USP40-202ENST00000409945 NBPF20Q3BBV1 942 aa10.46□□□□□ -0.74
USP40-202ENST00000409945 TMPRSS4Q9NRS4 437 aa10.46□□□□□ -0.74
USP40-202ENST00000409945 USTQ9Y2C2 406 aa10.46□□□□□ -0.74
USP40-202ENST00000409945 ERVH48-1M5A8F1 160 aa10.45□□□□□ -0.74
USP40-202ENST00000409945 MCCD1P59942 119 aaPredicted RBP10.45□□□□□ -0.74
USP40-202ENST00000409945 DPYDQ12882 1025 aa10.45□□□□□ -0.74
USP40-202ENST00000409945 EML3Q32P44 896 aa10.45□□□□□ -0.74
USP40-202ENST00000409945 PCDHGA11Q9Y5H2 935 aa10.45□□□□□ -0.74
USP40-202ENST00000409945 FSHRP23945 695 aa10.45□□□□□ -0.74
USP40-202ENST00000409945 VARSP26640 1264 aaKnown RBP10.45□□□□□ -0.74
USP40-202ENST00000409945 RPIAP49247 311 aa10.45□□□□□ -0.74
USP40-202ENST00000409945 ELOAQ14241 798 aaKnown RBP10.45□□□□□ -0.74
USP40-202ENST00000409945 MAP7D1Q3KQU3 841 aa10.45□□□□□ -0.74
USP40-202ENST00000409945 VASH1Q7L8A9 365 aaPredicted RBP10.45□□□□□ -0.74
USP40-202ENST00000409945 GAS2L2Q8NHY3 880 aa10.45□□□□□ -0.74
USP40-202ENST00000409945 ERICH3Q5RHP9 1530 aa10.44□□□□□ -0.74
USP40-202ENST00000409945 NR3C2P08235 984 aa10.44□□□□□ -0.74
USP40-202ENST00000409945 MRGPRX2Q96LB1 330 aa10.44□□□□□ -0.74
USP40-202ENST00000409945 KIF27Q86VH2 1401 aa10.44□□□□□ -0.74
USP40-202ENST00000409945 GTF2IP78347 998 aa10.43□□□□□ -0.74
USP40-202ENST00000409945 ATP5J2-PTCD1G3V325 749 aa10.43□□□□□ -0.74
USP40-202ENST00000409945 ANKMY2Q8IV38 441 aa10.43□□□□□ -0.74
USP40-202ENST00000409945 FHAD1B1AJZ9 1412 aa10.42□□□□□ -0.74
USP40-202ENST00000409945 DNAAF2Q9NVR5 837 aaKnown RBP10.42□□□□□ -0.74
USP40-202ENST00000409945 SFI1A8K8P3 1242 aa10.41□□□□□ -0.74
USP40-202ENST00000409945 SLC19A1P41440 591 aa10.41□□□□□ -0.74
USP40-202ENST00000409945 CDK15Q96Q40 435 aa10.41□□□□□ -0.74
USP40-202ENST00000409945 ZBTB7CA1YPR0 619 aa10.41□□□□□ -0.74
USP40-202ENST00000409945 KCTD17Q8N5Z5 321 aa10.41□□□□□ -0.74
USP40-202ENST00000409945 TPCN2Q8NHX9 752 aa10.41□□□□□ -0.74
USP40-202ENST00000409945 NOD1Q9Y239 953 aa10.41□□□□□ -0.74
USP40-202ENST00000409945 MAP4K5Q9Y4K4 846 aa10.41□□□□□ -0.74
USP40-202ENST00000409945 ADAMTS12P58397 1594 aa10.4□□□□□ -0.74
USP40-202ENST00000409945 ARHGEF11O15085 1522 aa10.4□□□□□ -0.74
USP40-202ENST00000409945 CD2BP2O95400 341 aaKnown RBP10.4□□□□□ -0.74
USP40-202ENST00000409945 LARP1Q6PKG0 1096 aaKnown RBP10.4□□□□□ -0.74
USP40-202ENST00000409945 ZNF592Q92610 1267 aa10.4□□□□□ -0.74
USP40-202ENST00000409945 GRIN2AQ12879 1464 aa10.4□□□□□ -0.75
USP40-202ENST00000409945 RIMBP3CA6NJZ7 1639 aa10.39□□□□□ -0.75
USP40-202ENST00000409945 RIMBP3BA6NNM3 1639 aa10.39□□□□□ -0.75
USP40-202ENST00000409945 RIMBP3Q9UFD9 1639 aa10.39□□□□□ -0.75
USP40-202ENST00000409945 CYLDQ9NQC7 956 aa10.39□□□□□ -0.75
USP40-202ENST00000409945 SPRYD7Q5W111 196 aa10.39□□□□□ -0.75
USP40-202ENST00000409945 CCDC102BQ68D86 513 aa10.39□□□□□ -0.75
USP40-202ENST00000409945 ZNF784Q8NCA9 323 aaPredicted RBP10.39□□□□□ -0.75
USP40-202ENST00000409945 BRD1O95696 1058 aa10.38□□□□□ -0.75
USP40-202ENST00000409945 SEPT12Q8IYM1 358 aa10.38□□□□□ -0.75
USP40-202ENST00000409945 SIX5Q8N196 739 aa10.38□□□□□ -0.75
USP40-202ENST00000409945 FAM200AQ8TCP9 573 aa10.38□□□□□ -0.75
USP40-202ENST00000409945 GZF1Q9H116 711 aaPredicted RBP10.38□□□□□ -0.75
USP40-202ENST00000409945 OSBPL3Q9H4L5 887 aa10.37□□□□□ -0.75
USP40-202ENST00000409945 PKD2L1Q9P0L9 805 aa10.37□□□□□ -0.75
USP40-202ENST00000409945 CLASP1Q7Z460 1538 aa10.37□□□□□ -0.75
USP40-202ENST00000409945 LILRA1O75019 489 aa10.37□□□□□ -0.75
USP40-202ENST00000409945 RNF20Q5VTR2 975 aa10.37□□□□□ -0.75
USP40-202ENST00000409945 PLA2G2EQ9NZK7 142 aa10.37□□□□□ -0.75
USP40-202ENST00000409945 CUL7Q14999 1698 aa10.36□□□□□ -0.75
USP40-202ENST00000409945 WNT7AO00755 349 aa10.36□□□□□ -0.75
USP40-202ENST00000409945 LZTS3O60299 673 aaPredicted RBP10.36□□□□□ -0.75
USP40-202ENST00000409945 ADD1P35611 737 aaKnown RBP10.36□□□□□ -0.75
USP40-202ENST00000409945 ERVK-9P63128 1117 aa10.36□□□□□ -0.75
USP40-202ENST00000409945 PSME1Q06323 249 aa10.36□□□□□ -0.75
USP40-202ENST00000409945 TSEN2Q8NCE0 465 aaKnown RBP10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms