RNA–Protein interactions for RNA: ENST00000368531.6

TPM3-211, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 1,115 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-211ENST00000368531 DDB1Q16531 1140 aa18.56■□□□□ 0.56
TPM3-211ENST00000368531 CDCA7Q9BWT1 371 aaPredicted RBP18.56■□□□□ 0.56
TPM3-211ENST00000368531 LRRC37A3O60309 1634 aa18.56■□□□□ 0.56
TPM3-211ENST00000368531 EXOC5O00471 708 aa18.55■□□□□ 0.56
TPM3-211ENST00000368531 WDR43Q15061 677 aaKnown RBP eCLIP18.55■□□□□ 0.56
TPM3-211ENST00000368531 NCAPD2Q15021 1401 aa18.55■□□□□ 0.56
TPM3-211ENST00000368531 PDE3BQ13370 1112 aa18.54■□□□□ 0.56
TPM3-211ENST00000368531 FAM182BQ5T319 152 aa18.53■□□□□ 0.56
TPM3-211ENST00000368531 ZCRB1Q8TBF4 217 aaKnown RBP18.53■□□□□ 0.56
TPM3-211ENST00000368531 DDX54Q8TDD1 881 aaKnown RBP18.53■□□□□ 0.56
TPM3-211ENST00000368531 PRKAR2BP31323 418 aa18.52■□□□□ 0.56
TPM3-211ENST00000368531 ILDR2Q71H61 639 aa18.52■□□□□ 0.56
TPM3-211ENST00000368531 KRT27Q7Z3Y8 459 aa18.52■□□□□ 0.56
TPM3-211ENST00000368531 KDRP35968 1356 aa18.52■□□□□ 0.55
TPM3-211ENST00000368531 OVOS2A0A0G2JMS6 1433 aa18.51■□□□□ 0.55
TPM3-211ENST00000368531 RSPH6AQ9H0K4 717 aa18.51■□□□□ 0.55
TPM3-211ENST00000368531 SHANK3Q9BYB0 1731 aa18.5■□□□□ 0.55
TPM3-211ENST00000368531 ADAMTS8Q9UP79 889 aa18.5■□□□□ 0.55
TPM3-211ENST00000368531 SPG7Q9UQ90 795 aa18.5■□□□□ 0.55
TPM3-211ENST00000368531 TNS2Q63HR2 1409 aa18.49■□□□□ 0.55
TPM3-211ENST00000368531 PKD1L3Q7Z443 1732 aa18.49■□□□□ 0.55
TPM3-211ENST00000368531 FCHSD2O94868 740 aa18.49■□□□□ 0.55
TPM3-211ENST00000368531 PLEKHO1Q53GL0 409 aaPredicted RBP18.49■□□□□ 0.55
TPM3-211ENST00000368531 CCDC146Q8IYE0 955 aa18.48■□□□□ 0.55
TPM3-211ENST00000368531 MARCH10Q8NA82 808 aaPredicted RBP18.48■□□□□ 0.55
TPM3-211ENST00000368531 KAT6BQ8WYB5 2073 aa18.48■□□□□ 0.55
TPM3-211ENST00000368531 FAM9BQ8IZU0 186 aa18.47■□□□□ 0.55
TPM3-211ENST00000368531 PNISRQ8TF01 805 aaKnown RBP18.47■□□□□ 0.55
TPM3-211ENST00000368531 PHACTR3Q96KR7 559 aa18.47■□□□□ 0.55
TPM3-211ENST00000368531 CCER2I3L3R5 266 aa18.46■□□□□ 0.55
TPM3-211ENST00000368531 NEFMP07197 916 aa18.46■□□□□ 0.55
TPM3-211ENST00000368531 ZNF530Q6P9A1 599 aaPredicted RBP18.46■□□□□ 0.55
TPM3-211ENST00000368531 MTHFSDQ2M296 383 aaKnown RBP18.45■□□□□ 0.54
TPM3-211ENST00000368531 AMOTQ4VCS5 1084 aa18.45■□□□□ 0.54
TPM3-211ENST00000368531 PNNQ9H307 717 aaKnown RBP18.45■□□□□ 0.54
TPM3-211ENST00000368531 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.45■□□□□ 0.545e-7■■■□□ 17.7
TPM3-211ENST00000368531 PCDH11XQ9BZA7 1347 aa18.45■□□□□ 0.54
TPM3-211ENST00000368531 PCDH11YQ9BZA8 1340 aa18.45■□□□□ 0.54
TPM3-211ENST00000368531 CYP27B1O15528 508 aa18.44■□□□□ 0.54
TPM3-211ENST00000368531 C1orf141Q5JVX7 400 aa18.43■□□□□ 0.54
TPM3-211ENST00000368531 PLEKHF1Q96S99 279 aa18.43■□□□□ 0.54
TPM3-211ENST00000368531 MAPK8IP3Q9UPT6 1336 aa18.43■□□□□ 0.54
TPM3-211ENST00000368531 PHKG2P15735 406 aa18.42■□□□□ 0.54
TPM3-211ENST00000368531 IFNL2Q8IZJ0 200 aa18.42■□□□□ 0.54
TPM3-211ENST00000368531 SENP3-EIF4A1A0A087X0R7 540 aa18.41■□□□□ 0.54
TPM3-211ENST00000368531 FAM196AQ6ZSG2 479 aa18.41■□□□□ 0.54
TPM3-211ENST00000368531 ACSBG1Q96GR2 724 aa18.41■□□□□ 0.54
TPM3-211ENST00000368531 VIRMAQ69YN4 1812 aaKnown RBP18.41■□□□□ 0.54
TPM3-211ENST00000368531 DLG5Q8TDM6 1919 aa18.41■□□□□ 0.54
TPM3-211ENST00000368531 SBF2Q86WG5 1849 aa18.4■□□□□ 0.54
TPM3-211ENST00000368531 GAS2L2Q8NHY3 880 aa18.4■□□□□ 0.54
TPM3-211ENST00000368531 RUNDC1Q96C34 613 aa18.4■□□□□ 0.54
TPM3-211ENST00000368531 MPRIPQ6WCQ1 1025 aa18.39■□□□□ 0.53
TPM3-211ENST00000368531 DOT1LQ8TEK3 1739 aa18.39■□□□□ 0.53
TPM3-211ENST00000368531 NEUROD2Q15784 382 aa18.38■□□□□ 0.53
TPM3-211ENST00000368531 AKAP4Q5JQC9 854 aa18.38■□□□□ 0.53
TPM3-211ENST00000368531 SYTL4Q96C24 671 aaPredicted RBP18.38■□□□□ 0.53
TPM3-211ENST00000368531 RRP7AQ9Y3A4 280 aaKnown RBP18.38■□□□□ 0.53
TPM3-211ENST00000368531 PLEKHG2Q9H7P9 1386 aa18.38■□□□□ 0.53
TPM3-211ENST00000368531 TRIM37O94972 964 aa18.37■□□□□ 0.53
TPM3-211ENST00000368531 GNAT3A8MTJ3 354 aa18.36■□□□□ 0.53
TPM3-211ENST00000368531 HSP90AB1P08238 724 aaKnown RBP18.36■□□□□ 0.53
TPM3-211ENST00000368531 NFE2L2Q16236 605 aa18.36■□□□□ 0.53
TPM3-211ENST00000368531 TOGARAM1Q9Y4F4 1720 aa18.36■□□□□ 0.53
TPM3-211ENST00000368531 ITGB4P16144 1822 aa18.35■□□□□ 0.53
TPM3-211ENST00000368531 SCN11AQ9UI33 1791 aa18.35■□□□□ 0.53
TPM3-211ENST00000368531 MAP3K5Q99683 1374 aa18.35■□□□□ 0.53
TPM3-211ENST00000368531 APAF1O14727 1248 aa18.35■□□□□ 0.53
TPM3-211ENST00000368531 KCNQ2O43526 872 aa18.35■□□□□ 0.53
TPM3-211ENST00000368531 TMPOP42166 694 aaKnown RBP18.35■□□□□ 0.53
TPM3-211ENST00000368531 PRIM1P49642 420 aaKnown RBP18.35■□□□□ 0.53
TPM3-211ENST00000368531 NKX1-1Q15270 411 aaPredicted RBP18.35■□□□□ 0.53
TPM3-211ENST00000368531 PTF1AQ7RTS3 328 aa18.35■□□□□ 0.53
TPM3-211ENST00000368531 LGR6Q9HBX8 967 aa18.35■□□□□ 0.53
TPM3-211ENST00000368531 RIPK4P57078 832 aa18.34■□□□□ 0.53
TPM3-211ENST00000368531 DCAF5Q96JK2 942 aa18.34■□□□□ 0.53
TPM3-211ENST00000368531 KDM6AO15550 1401 aaPredicted RBP18.33■□□□□ 0.53
TPM3-211ENST00000368531 RNMTO43148 476 aaKnown RBP18.33■□□□□ 0.52
TPM3-211ENST00000368531 DCTN1Q14203 1278 aa18.33■□□□□ 0.52
TPM3-211ENST00000368531 RTF1Q92541 710 aaKnown RBP18.33■□□□□ 0.52
TPM3-211ENST00000368531 NHSQ6T4R5 1651 aa18.32■□□□□ 0.52
TPM3-211ENST00000368531 MCM10Q7L590 875 aa18.32■□□□□ 0.52
TPM3-211ENST00000368531 SALL2Q9Y467 1007 aaPredicted RBP18.32■□□□□ 0.52
TPM3-211ENST00000368531 CABP4P57796 275 aa18.31■□□□□ 0.52
TPM3-211ENST00000368531 IL17REQ8NFR9 667 aa18.31■□□□□ 0.52
TPM3-211ENST00000368531 BCL9O00512 1426 aa18.31■□□□□ 0.52
TPM3-211ENST00000368531 THUMPD2Q9BTF0 503 aaKnown RBP18.3■□□□□ 0.52
TPM3-211ENST00000368531 TMOD3Q9NYL9 352 aa18.3■□□□□ 0.52
TPM3-211ENST00000368531 BTAF1O14981 1849 aa18.3■□□□□ 0.52
TPM3-211ENST00000368531 SF3B2Q13435 895 aaKnown RBP18.29■□□□□ 0.52
TPM3-211ENST00000368531 NFATC2IPQ8NCF5 419 aa18.29■□□□□ 0.52
TPM3-211ENST00000368531 BCL11BQ9C0K0 894 aaPredicted RBP18.29■□□□□ 0.52
TPM3-211ENST00000368531 TNS1Q9HBL0 1735 aaKnown RBP18.29■□□□□ 0.52
TPM3-211ENST00000368531 ERVV-2B6SEH9 535 aa18.28■□□□□ 0.52
TPM3-211ENST00000368531 APBA3O96018 575 aa18.28■□□□□ 0.52
TPM3-211ENST00000368531 UPF1Q92900 1129 aaKnown RBP eCLIP18.28■□□□□ 0.52
TPM3-211ENST00000368531 HTATSF1O43719 755 aaKnown RBP18.27■□□□□ 0.52
TPM3-211ENST00000368531 TEFQ10587 303 aa18.27■□□□□ 0.52
TPM3-211ENST00000368531 PIGBQ92521 554 aa18.27■□□□□ 0.52
TPM3-211ENST00000368531 ADAMTS7Q9UKP4 1686 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms