RNA–Protein interactions for RNA: ENST00000342245.8

SMPD1-201, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMPD1, Length 2,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-201ENST00000342245 MTHFSP49914 203 aa22.32■■□□□ 1.16
SMPD1-201ENST00000342245 CUL4AQ13619 759 aa22.32■■□□□ 1.16
SMPD1-201ENST00000342245 NEURL4Q96JN8 1562 aa22.32■■□□□ 1.16
SMPD1-201ENST00000342245 PLEKHM2Q8IWE5 1019 aa22.31■■□□□ 1.16
SMPD1-201ENST00000342245 U2AF1L5P0DN76 240 aaPredicted RBP22.3■■□□□ 1.16
SMPD1-201ENST00000342245 U2AF1Q01081 240 aaKnown RBP eCLIP22.3■■□□□ 1.16
SMPD1-201ENST00000342245 SPAG9O60271 1321 aaKnown RBP22.3■■□□□ 1.16
SMPD1-201ENST00000342245 PYCARDQ9ULZ3 195 aa22.3■■□□□ 1.16
SMPD1-201ENST00000342245 NSD2O96028 1365 aa22.29■■□□□ 1.16
SMPD1-201ENST00000342245 KCNF1Q9H3M0 494 aa22.29■■□□□ 1.16
SMPD1-201ENST00000342245 PTPRTO14522 1441 aa22.29■■□□□ 1.16
SMPD1-201ENST00000342245 CAPN2P17655 700 aa22.29■■□□□ 1.16
SMPD1-201ENST00000342245 MPNDQ8N594 471 aa22.29■■□□□ 1.16
SMPD1-201ENST00000342245 ZNF397Q8NF99 534 aaPredicted RBP22.29■■□□□ 1.16
SMPD1-201ENST00000342245 FAM53CQ9NYF3 392 aa22.29■■□□□ 1.16
SMPD1-201ENST00000342245 TMX3Q96JJ7 454 aa22.28■■□□□ 1.16
SMPD1-201ENST00000342245 WDR33Q9C0J8 1336 aaKnown RBP22.28■■□□□ 1.16
SMPD1-201ENST00000342245 PTCH1Q13635 1447 aa22.27■■□□□ 1.16
SMPD1-201ENST00000342245 TMPOP42166 694 aaKnown RBP22.27■■□□□ 1.16
SMPD1-201ENST00000342245 HCLS1P14317 486 aaPredicted RBP22.26■■□□□ 1.15
SMPD1-201ENST00000342245 CCDC112Q8NEF3 446 aa22.26■■□□□ 1.15
SMPD1-201ENST00000342245 USP48Q86UV5 1035 aa22.26■■□□□ 1.15
SMPD1-201ENST00000342245 TRIM35Q9UPQ4 493 aa22.25■■□□□ 1.15
SMPD1-201ENST00000342245 RGS22Q8NE09 1264 aa22.25■■□□□ 1.15
SMPD1-201ENST00000342245 YY1AP1Q9H869 796 aa22.25■■□□□ 1.15
SMPD1-201ENST00000342245 KIF24Q5T7B8 1368 aa22.25■■□□□ 1.15
SMPD1-201ENST00000342245 EFCC1Q9HA90 598 aa22.24■■□□□ 1.15
SMPD1-201ENST00000342245 CD109Q6YHK3 1445 aa22.24■■□□□ 1.15
SMPD1-201ENST00000342245 ERC2O15083 957 aa22.24■■□□□ 1.15
SMPD1-201ENST00000342245 CHAMP1Q96JM3 812 aa22.24■■□□□ 1.15
SMPD1-201ENST00000342245 ABCA6Q8N139 1617 aa22.23■■□□□ 1.15
SMPD1-201ENST00000342245 SLFNL1Q499Z3 407 aa22.23■■□□□ 1.15
SMPD1-201ENST00000342245 FOXD4L5Q5VV16 416 aaPredicted RBP22.23■■□□□ 1.15
SMPD1-201ENST00000342245 FOXD4L4Q8WXT5 416 aaPredicted RBP22.23■■□□□ 1.15
SMPD1-201ENST00000342245 UBE2HP62256 183 aa22.23■■□□□ 1.15
SMPD1-201ENST00000342245 ZFP91Q96JP5 570 aaPredicted RBP22.23■■□□□ 1.15
SMPD1-201ENST00000342245 TRIM6-TRIM34B2RNG4 842 aa22.22■■□□□ 1.15
SMPD1-201ENST00000342245 GADD45BO75293 160 aaPredicted RBP22.22■■□□□ 1.15
SMPD1-201ENST00000342245 SIRT2Q8IXJ6 389 aa22.22■■□□□ 1.15
SMPD1-201ENST00000342245 PLEKHF1Q96S99 279 aa22.22■■□□□ 1.15
SMPD1-201ENST00000342245 TRIM34Q9BYJ4 488 aa22.22■■□□□ 1.15
SMPD1-201ENST00000342245 DCTPP1Q9H773 170 aa22.22■■□□□ 1.15
SMPD1-201ENST00000342245 INO80Q9ULG1 1556 aaPredicted RBP22.22■■□□□ 1.15
SMPD1-201ENST00000342245 RNF20Q5VTR2 975 aa22.21■■□□□ 1.15
SMPD1-201ENST00000342245 FUCA2Q9BTY2 467 aa22.21■■□□□ 1.15
SMPD1-201ENST00000342245 NEK4P51957 841 aa22.2■■□□□ 1.14
SMPD1-201ENST00000342245 ZFYVE16Q7Z3T8 1539 aa22.2■■□□□ 1.14
SMPD1-201ENST00000342245 MAP3K4Q9Y6R4 1608 aa22.2■■□□□ 1.14
SMPD1-201ENST00000342245 TNNT1P13805 278 aa22.2■■□□□ 1.14
SMPD1-201ENST00000342245 MCCP23508 829 aa22.2■■□□□ 1.14
SMPD1-201ENST00000342245 ANAPC15P60006 121 aa22.19■■□□□ 1.14
SMPD1-201ENST00000342245 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.19■■□□□ 1.14
SMPD1-201ENST00000342245 ABCC4O15439 1325 aa22.19■■□□□ 1.14
SMPD1-201ENST00000342245 FEZ2Q9UHY8 353 aaPredicted RBP22.19■■□□□ 1.14
SMPD1-201ENST00000342245 SDSP20132 328 aa22.18■■□□□ 1.14
SMPD1-201ENST00000342245 CYP2C19P33261 490 aa22.18■■□□□ 1.14
SMPD1-201ENST00000342245 RTL1A6NKG5 1358 aa22.17■■□□□ 1.14
SMPD1-201ENST00000342245 PLCB2Q00722 1185 aa22.17■■□□□ 1.14
SMPD1-201ENST00000342245 C1orf115Q9H7X2 142 aa22.17■■□□□ 1.14
SMPD1-201ENST00000342245 CHMP4AQ9BY43 222 aa22.16■■□□□ 1.14
SMPD1-201ENST00000342245 ATP6V1DQ9Y5K8 247 aa22.16■■□□□ 1.14
SMPD1-201ENST00000342245 RPAP1Q9BWH6 1393 aaPredicted RBP22.16■■□□□ 1.14
SMPD1-201ENST00000342245 ARHGAP30Q7Z6I6 1101 aaPredicted RBP22.16■■□□□ 1.14
SMPD1-201ENST00000342245 KIF1BPQ96EK5 621 aa22.16■■□□□ 1.14
SMPD1-201ENST00000342245 CCDC192P0DO97 292 aa22.15■■□□□ 1.14
SMPD1-201ENST00000342245 MRPL50Q8N5N7 158 aaKnown RBP22.15■■□□□ 1.14
SMPD1-201ENST00000342245 IFT57Q9NWB7 429 aa22.15■■□□□ 1.14
SMPD1-201ENST00000342245 ERICH4A6NGS2 130 aa22.15■■□□□ 1.14
SMPD1-201ENST00000342245 NOL10Q9BSC4 688 aaKnown RBP22.15■■□□□ 1.14
SMPD1-201ENST00000342245 KIF3BO15066 747 aa22.14■■□□□ 1.13
SMPD1-201ENST00000342245 SPC24Q8NBT2 197 aa22.14■■□□□ 1.13
SMPD1-201ENST00000342245 IL17RAQ96F46 866 aa22.14■■□□□ 1.13
SMPD1-201ENST00000342245 GEMIN8Q9NWZ8 242 aaKnown RBP22.14■■□□□ 1.13
SMPD1-201ENST00000342245 RGS12O14924 1447 aa22.14■■□□□ 1.13
SMPD1-201ENST00000342245 BMS1Q14692 1282 aaKnown RBP22.14■■□□□ 1.13
SMPD1-201ENST00000342245 KMT5BQ4FZB7 885 aa22.14■■□□□ 1.13
SMPD1-201ENST00000342245 ERO1AQ96HE7 468 aa22.14■■□□□ 1.13
SMPD1-201ENST00000342245 C16orf45Q96MC5 204 aaPredicted RBP22.14■■□□□ 1.13
SMPD1-201ENST00000342245 CTR9Q6PD62 1173 aa22.13■■□□□ 1.13
SMPD1-201ENST00000342245 API5Q9BZZ5 524 aaKnown RBP22.13■■□□□ 1.13
SMPD1-201ENST00000342245 SMARCA5O60264 1052 aaPredicted RBP22.13■■□□□ 1.13
SMPD1-201ENST00000342245 PTGS1P23219 599 aa22.13■■□□□ 1.13
SMPD1-201ENST00000342245 PUS7Q96PZ0 661 aaKnown RBP22.13■■□□□ 1.13
SMPD1-201ENST00000342245 ZC3H13Q5T200 1668 aaKnown RBP22.12■■□□□ 1.13
SMPD1-201ENST00000342245 CCDC171Q6TFL3 1326 aa22.12■■□□□ 1.13
SMPD1-201ENST00000342245 FANCAO15360 1455 aa22.12■■□□□ 1.13
SMPD1-201ENST00000342245 MAPK8IP2Q13387 824 aaPredicted RBP22.12■■□□□ 1.13
SMPD1-201ENST00000342245 GDPD2Q9HCC8 539 aa22.12■■□□□ 1.13
SMPD1-201ENST00000342245 SETBP1Q9Y6X0 1596 aa22.12■■□□□ 1.13
SMPD1-201ENST00000342245 AP5Z1O43299 807 aa22.12■■□□□ 1.13
SMPD1-201ENST00000342245 HTATSF1O43719 755 aaKnown RBP22.12■■□□□ 1.13
SMPD1-201ENST00000342245 CEP135Q66GS9 1140 aa22.12■■□□□ 1.13
SMPD1-201ENST00000342245 ARAP3Q8WWN8 1544 aa22.11■■□□□ 1.13
SMPD1-201ENST00000342245 FAM200AQ8TCP9 573 aa22.11■■□□□ 1.13
SMPD1-201ENST00000342245 HNRNPH2P55795 449 aaKnown RBP22.1■■□□□ 1.13
SMPD1-201ENST00000342245 TPD52L1Q16890 204 aaPredicted RBP22.1■■□□□ 1.13
SMPD1-201ENST00000342245 ATP7AQ04656 1500 aa22.1■■□□□ 1.13
SMPD1-201ENST00000342245 TNNT3P45378 269 aaPredicted RBP22.09■■□□□ 1.13
SMPD1-201ENST00000342245 MMP14P50281 582 aa22.09■■□□□ 1.13
SMPD1-201ENST00000342245 TEX35Q5T0J7 233 aa22.09■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms