RNA–Protein interactions for RNA: ENST00000243326.9

RIF1-201, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene RIF1, Length 15,003 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-201ENST00000243326 FILIP1LQ4L180 1135 aa8.88□□□□□ -0.99
RIF1-201ENST00000243326 CFAP100Q494V2 611 aa8.87□□□□□ -0.99
RIF1-201ENST00000243326 TCEANC2Q96MN5 208 aa8.87□□□□□ -0.99
RIF1-201ENST00000243326 PSME1Q06323 249 aa8.87□□□□□ -0.99
RIF1-201ENST00000243326 HMGN5P82970 282 aaKnown RBP8.87□□□□□ -0.99
RIF1-201ENST00000243326 KRT18P05783 430 aaKnown RBP8.87□□□□□ -0.99
RIF1-201ENST00000243326 MYOM3Q5VTT5 1437 aa8.87□□□□□ -0.99
RIF1-201ENST00000243326 DDX58O95786 925 aaKnown RBP8.87□□□□□ -0.99
RIF1-201ENST00000243326 CASQ1P31415 396 aa8.87□□□□□ -0.99
RIF1-201ENST00000243326 PTPN14Q15678 1187 aa8.87□□□□□ -0.99
RIF1-201ENST00000243326 MATR3P43243 847 aaKnown RBP eCLIP8.87□□□□□ -0.99
RIF1-201ENST00000243326 ZNF396Q96N95 335 aaPredicted RBP8.87□□□□□ -0.99
RIF1-201ENST00000243326 HCLS1P14317 486 aaPredicted RBP8.87□□□□□ -0.99
RIF1-201ENST00000243326 LMAN1P49257 510 aa8.86□□□□□ -0.99
RIF1-201ENST00000243326 CLASRPQ8N2M8 674 aaKnown RBP8.86□□□□□ -0.99
RIF1-201ENST00000243326 PRAM1Q96QH2 718 aa8.86□□□□□ -0.99
RIF1-201ENST00000243326 DUSP27Q5VZP5 1158 aa8.86□□□□□ -0.99
RIF1-201ENST00000243326 TBC1D9Q6ZT07 1266 aa8.86□□□□□ -0.99
RIF1-201ENST00000243326 KIAA1328Q86T90 577 aa8.86□□□□□ -0.99
RIF1-201ENST00000243326 CCDC43Q96MW1 224 aaKnown RBP8.86□□□□□ -0.99
RIF1-201ENST00000243326 SRGAP3O43295 1099 aa8.85□□□□□ -0.99
RIF1-201ENST00000243326 DNAJC21Q5F1R6 531 aaKnown RBP8.85□□□□□ -0.99
RIF1-201ENST00000243326 TMC6Q7Z403 805 aa8.85□□□□□ -0.99
RIF1-201ENST00000243326 TXNDC2Q86VQ3 553 aa8.85□□□□□ -0.99
RIF1-201ENST00000243326 C16orf71Q8IYS4 520 aaPredicted RBP8.85□□□□□ -0.99
RIF1-201ENST00000243326 EID1Q9Y6B2 187 aa8.85□□□□□ -0.99
RIF1-201ENST00000243326 SMARCA4P51532 1647 aa8.85□□□□□ -0.99
RIF1-201ENST00000243326 GPIHBP1Q8IV16 184 aa8.85□□□□□ -0.99
RIF1-201ENST00000243326 SMARCE1Q969G3 411 aa8.85□□□□□ -0.99
RIF1-201ENST00000243326 TMCO3Q6UWJ1 677 aa8.85□□□□□ -0.99
RIF1-201ENST00000243326 LRRC2Q9BYS8 371 aa8.85□□□□□ -0.99
RIF1-201ENST00000243326 DEF6Q9H4E7 631 aa8.85□□□□□ -0.99
RIF1-201ENST00000243326 SERPINA10Q9UK55 444 aa8.85□□□□□ -0.99
RIF1-201ENST00000243326 SF3A3Q12874 501 aaKnown RBP eCLIP8.85□□□□□ -0.99
RIF1-201ENST00000243326 PDE3AQ14432 1141 aa8.85□□□□□ -0.99
RIF1-201ENST00000243326 BLOC1S2Q6QNY1 142 aa8.85□□□□□ -0.99
RIF1-201ENST00000243326 SYNJ1O43426 1573 aa8.85□□□□□ -0.99
RIF1-201ENST00000243326 GPRASP1Q5JY77 1395 aa8.85□□□□□ -0.99
RIF1-201ENST00000243326 CCDC183Q5T5S1 534 aa8.85□□□□□ -0.99
RIF1-201ENST00000243326 GCC1Q96CN9 775 aa8.85□□□□□ -0.99
RIF1-201ENST00000243326 NOL10Q9BSC4 688 aaKnown RBP8.85□□□□□ -0.99
RIF1-201ENST00000243326 CCDC8Q9H0W5 538 aaPredicted RBP8.85□□□□□ -0.99
RIF1-201ENST00000243326 HDAC5Q9UQL6 1122 aa8.85□□□□□ -0.99
RIF1-201ENST00000243326 KLHL34Q8N239 644 aa8.84□□□□□ -0.99
RIF1-201ENST00000243326 CDK5RAP3Q96JB5 506 aa8.84□□□□□ -0.99
RIF1-201ENST00000243326 CWC22Q9HCG8 908 aaKnown RBP8.84□□□□□ -0.99
RIF1-201ENST00000243326 GOPCQ9HD26 462 aa8.84□□□□□ -0.99
RIF1-201ENST00000243326 UBXN4Q92575 508 aa8.84□□□□□ -0.99
RIF1-201ENST00000243326 CDR1P51861 262 aa8.84□□□□□ -0.99
RIF1-201ENST00000243326 GOLGA4Q13439 2230 aaKnown RBP8.84□□□□□ -0.99
RIF1-201ENST00000243326 RARSP54136 660 aaKnown RBP8.84□□□□□ -0.99
RIF1-201ENST00000243326 TTC16Q8NEE8 873 aa8.84□□□□□ -0.99
RIF1-201ENST00000243326 GTF3C6Q969F1 213 aa8.84□□□□□ -0.99
RIF1-201ENST00000243326 FKBP15Q5T1M5 1219 aa8.84□□□□□ -0.99
RIF1-201ENST00000243326 PRIM1P49642 420 aaKnown RBP8.84□□□□□ -0.99
RIF1-201ENST00000243326 CTDP1Q9Y5B0 961 aaPredicted RBP8.84□□□□□ -0.99
RIF1-201ENST00000243326 CCDC30Q5VVM6 783 aa8.84□□□□□ -0.99
RIF1-201ENST00000243326 GAS2L2Q8NHY3 880 aa8.84□□□□□ -0.99
RIF1-201ENST00000243326 CCDC178Q5BJE1 867 aa8.84□□□□□ -0.99
RIF1-201ENST00000243326 GIMAP7Q8NHV1 300 aa8.84□□□□□ -0.99
RIF1-201ENST00000243326 BOLA2Q9H3K6 86 aa8.84□□□□□ -0.99
RIF1-201ENST00000243326 CABP1Q9NZU7 370 aa8.84□□□□□ -0.99
RIF1-201ENST00000243326 JPH4Q96JJ6 628 aa8.83□□□□□ -1
RIF1-201ENST00000243326 GJB2P29033 226 aa8.83□□□□□ -1
RIF1-201ENST00000243326 NLRP6P59044 892 aa8.83□□□□□ -1
RIF1-201ENST00000243326 CHAMP1Q96JM3 812 aa8.83□□□□□ -1
RIF1-201ENST00000243326 CNNM1Q9NRU3 951 aa8.83□□□□□ -1
RIF1-201ENST00000243326 NSD3Q9BZ95 1437 aa8.83□□□□□ -1
RIF1-201ENST00000243326 ERCC4Q92889 916 aaPredicted RBP8.83□□□□□ -1
RIF1-201ENST00000243326 TMX4Q9H1E5 349 aaPredicted RBP8.83□□□□□ -1
RIF1-201ENST00000243326 GNAI3P08754 354 aa8.83□□□□□ -1
RIF1-201ENST00000243326 POLR3DP05423 398 aaPredicted RBP8.83□□□□□ -1
RIF1-201ENST00000243326 FSIP1Q8NA03 581 aa8.83□□□□□ -1
RIF1-201ENST00000243326 HDGFL1Q5TGJ6 251 aa8.83□□□□□ -1
RIF1-201ENST00000243326 CEP135Q66GS9 1140 aa8.82□□□□□ -1
RIF1-201ENST00000243326 STRN4Q9NRL3 753 aa8.82□□□□□ -1
RIF1-201ENST00000243326 ZGPATQ8N5A5 531 aaKnown RBP8.82□□□□□ -1
RIF1-201ENST00000243326 PCDHB15Q9Y5E8 787 aa8.82□□□□□ -1
RIF1-201ENST00000243326 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.82□□□□□ -1
RIF1-201ENST00000243326 CEP57L1Q8IYX8 460 aa8.82□□□□□ -1
RIF1-201ENST00000243326 AFAP1Q8N556 730 aa8.82□□□□□ -1
RIF1-201ENST00000243326 CDK19Q9BWU1 502 aa8.82□□□□□ -1
RIF1-201ENST00000243326 SSR1P43307 286 aaKnown RBP8.82□□□□□ -1
RIF1-201ENST00000243326 FGD5Q6ZNL6 1462 aa8.82□□□□□ -1
RIF1-201ENST00000243326 CPA1P15085 419 aa8.82□□□□□ -1
RIF1-201ENST00000243326 ANO6Q4KMQ2 910 aa8.82□□□□□ -1
RIF1-201ENST00000243326 VGFO15240 615 aaPredicted RBP8.82□□□□□ -1
RIF1-201ENST00000243326 KARSQ15046 597 aaKnown RBP8.82□□□□□ -1
RIF1-201ENST00000243326 ANXA1P04083 346 aa8.81□□□□□ -1
RIF1-201ENST00000243326 RBM33Q96EV2 1170 aaKnown RBP8.81□□□□□ -1
RIF1-201ENST00000243326 HAND2P61296 217 aa8.81□□□□□ -1
RIF1-201ENST00000243326 CCDC69A6NI79 296 aa8.81□□□□□ -1
RIF1-201ENST00000243326 SNW1Q13573 536 aaKnown RBP8.81□□□□□ -1
RIF1-201ENST00000243326 AMOTL1Q8IY63 956 aa8.81□□□□□ -1
RIF1-201ENST00000243326 PTGS1P23219 599 aa8.81□□□□□ -1
RIF1-201ENST00000243326 ERLIN1O75477 346 aa8.81□□□□□ -1
RIF1-201ENST00000243326 CERS3Q8IU89 383 aa8.81□□□□□ -1
RIF1-201ENST00000243326 BRMS1Q9HCU9 246 aa8.81□□□□□ -1
RIF1-201ENST00000243326 U2AF2P26368 475 aaKnown RBP eCLIP8.81□□□□□ -17e-7■■■■□ 21.1
RIF1-201ENST00000243326 KIF4BQ2VIQ3 1234 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms