RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Q9D9S1 216 aa18.6■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 Dhx16G3X8X0 1044 aaKnown RBP18.6■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 Tarbp1E9Q368 1579 aa18.59■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 Hoxb7P09024 217 aa18.59■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 EzrP26040 586 aaKnown RBP18.59■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 Rsph6aQ8CDR2 708 aa18.59■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 Vamp4O70480 141 aa18.59■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 Eva1cP58659 440 aa18.59■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 Srek1Q8BZX4 494 aaKnown RBP18.59■□□□□ 0.57
Ccdc88b-201ENSMUST00000113440 Kif14L0N7N1 1674 aaKnown RBP18.58■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 Nkx1-2P42580 305 aa18.58■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 Cplx1P63040 134 aa18.57■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 Sf3b2Q3UJB0 878 aaKnown RBP18.57■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 Flad1Q8R123 492 aa18.57■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 FanclQ9CR14 375 aa18.57■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 Mcm4P49717 862 aa18.57■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 Chpf2Q3UU43 768 aa18.57■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 TimelessQ9R1X4 1197 aa18.57■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 Eif4a2P10630 407 aa18.57■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 Tmem132eQ6IEE6 982 aa18.57■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 Ccdc155Q80VJ8 648 aa18.56■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 Trim27Q62158 513 aa18.56■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 Eif3bQ8JZQ9 803 aaKnown RBP18.56■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 Cpa2Q504N0 417 aa18.56■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 Znf608Q56A10 1511 aa18.56■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 Ankrd50F7BE84 1390 aa18.56■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 Ttc19Q8CC21 365 aa18.55■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 Skint5A7XUY5 1461 aa18.55■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 Lamc1P02468 1607 aaKnown RBP18.55■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 Kif20aP97329 887 aa18.55■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 Ppp1r3fQ9JIG4 799 aa18.55■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 Top1mtQ8R4U6 593 aa18.55■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 Dot1lQ6XZL8 1540 aa18.55■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 BccipQ9CWI3 316 aa18.54■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 Brd1E9PZ26 1189 aaKnown RBP18.54■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 Fez1Q8K0X8 392 aa18.54■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 Tmc1Q8R4P5 757 aa18.54■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 Hmgn5Q9JL35 406 aa18.54■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 Fam83gQ5SWY7 812 aa18.54■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 Mbd5B1AYB6 1498 aa18.54■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 Fam13aQ8BGI4 693 aa18.53■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 Brf1Q8CFK2 676 aa18.53■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 Evc2Q8K1G2 1220 aa18.53■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 Gm21969J3QJZ1 289 aa18.53■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 Nol11Q8BJW5 723 aaKnown RBP18.53■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 Noc3lQ8VI84 807 aaKnown RBP18.53■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 Catsper2A2ARP9 588 aa18.52■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 Farp2Q91VS8 1065 aa18.52■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 Kdm5cP41230 1554 aa18.52■□□□□ 0.56
Ccdc88b-201ENSMUST00000113440 Map3k19E9Q3S4 1311 aa18.52■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Tomm22Q9CPQ3 142 aa18.52■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Fam135bQ9DAI6 1403 aa18.51■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Fkbp5Q64378 456 aa18.51■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 ZgpatQ8VDM1 511 aa18.51■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Usp54Q8BL06 1588 aaKnown RBP18.51■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Mroh2aD3Z750 1679 aa18.51■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 AU022751B1B0V2 589 aa18.51■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Me1P06801 572 aa18.51■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Hnrnpul1Q8VDM6 859 aaKnown RBP18.51■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Acsbg1Q99PU5 721 aa18.51■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Prim1P20664 417 aa18.5■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 ApobrQ8VBT6 942 aa18.5■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Rhot2Q8JZN7 620 aa18.5■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 LifrP42703 1092 aa18.5■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Tpm1P58771 284 aa18.5■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Pof1bQ8K4L4 587 aa18.5■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Rec8Q8C5S7 591 aa18.49■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Anapc15-psA0A140T8L6 141 aa18.49■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Cct4P80315 539 aaKnown RBP18.49■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Q4VA45 678 aa18.49■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Tshz3Q8CGV9 1081 aa18.49■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Rbm10Q99KG3 930 aaKnown RBP18.49■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Scaf11E9PZM7 1456 aaKnown RBP18.49■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Cfap99A0A140LIX9 648 aa18.49■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Cnnm3Q32NY4 713 aa18.48■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Ccp110Q7TSH4 1004 aa18.48■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Slc26a8Q8R0C3 999 aa18.48■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Efcab6Q6P1E8 1516 aa18.48■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Hoxa7P02830 229 aa18.48■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Amotl2Q8K371 772 aa18.48■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Sytl4Q9R0Q1 673 aa18.48■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Kiaa1107Q80TK0 1369 aa18.48■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Ankib1Q6ZPS6 1085 aa18.48■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Dixdc1Q80Y83 711 aa18.48■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Gpatch3Q8BIY1 525 aa18.48■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Slc5a1Q8C3K6 665 aa18.48■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 OptnQ8K3K8 584 aa18.48■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 NaspQ99MD9 773 aaKnown RBP18.48■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 A0A1L1SQF0 893 aa18.48■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Syce3B5KM66 88 aa18.47■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Hfm1D3Z4R1 1434 aa18.47■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Dzip1Q8BMD2 852 aa18.47■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Usp19Q3UJD6 1360 aa18.47■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Pik3r4Q8VD65 1358 aa18.47■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Chrna2Q91X60 512 aa18.47■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 NpatQ8BMA5 1420 aa18.47■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Ttc21aQ8C0S4 1314 aa18.46■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Abl1P00520 1123 aa18.46■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Agtpbp1Q641K1 1218 aa18.46■□□□□ 0.55
Ccdc88b-201ENSMUST00000113440 Pnmal2G3X9N3 661 aa18.46■□□□□ 0.55
Retrieved 100 of 22,080 RNA–protein pairs in 68.1 ms