RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 ACTN2P35609 894 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 CDKN1AP38936 164 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 DVL1P1P54792 670 aaPredicted RBP2.12□□□□□ -2.07
VPS13A-206ENST00000376646 PDE1BQ01064 536 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 GOLGA8DPQ0D2H9 430 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 NAE1Q13564 534 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 HIST2H2ACQ16777 129 aaPredicted RBP2.12□□□□□ -2.07
VPS13A-206ENST00000376646 ALG11Q2TAA5 492 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 RILPL1Q5EBL4 403 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 LCE3CQ5T5A8 94 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 ASB18Q6ZVZ8 466 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 CCDC13Q8IYE1 715 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 RNF113BQ8IZP6 322 aaKnown RBP2.12□□□□□ -2.07
VPS13A-206ENST00000376646 TAS1R2Q8TE23 839 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 SCFD2Q8WU76 684 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 ARHGEF2Q92974 986 aaKnown RBP2.12□□□□□ -2.07
VPS13A-206ENST00000376646 CCDC68Q9H2F9 335 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 PLEKHA4Q9H4M7 779 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 SLC6A13Q9NSD5 602 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 LOXL2Q9Y4K0 774 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 A0A1B0GU03 582 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 A0A1W2PQF6 199 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 hCG_1807616A0A1W2PRN6 198 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 ERI2A8K979 691 aaKnown RBP2.12□□□□□ -2.07
VPS13A-206ENST00000376646 MYO1GB0I1T2 1018 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 AKR1B15C9JRZ8 316 aaPredicted RBP2.12□□□□□ -2.07
VPS13A-206ENST00000376646 USP17L23D6RBM5 183 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 VILLO15195 856 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 PAGE4O60829 102 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 GJB3O75712 270 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 PORP16435 677 aaPredicted RBP2.12□□□□□ -2.07
VPS13A-206ENST00000376646 ALDH4A1P30038 563 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 PIP4K2AP48426 406 aaPredicted RBP2.12□□□□□ -2.07
VPS13A-206ENST00000376646 TAF6P49848 677 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 NR0B1P51843 470 aaKnown RBP2.12□□□□□ -2.07
VPS13A-206ENST00000376646 MC1RQ01726 317 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 CREB5Q02930 508 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 CUL4AQ13619 759 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 FGFBP1Q14512 234 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 DPCR1Q3MIW9 517 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 SIRPB2Q5JXA9 342 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 ARHGAP11AQ6P4F7 1023 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 FAM171BQ6P995 826 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 KLHL35Q6PF15 583 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 KCTD18Q6PI47 426 aaPredicted RBP2.12□□□□□ -2.07
VPS13A-206ENST00000376646 NCEH1Q6PIU2 408 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 PCDH20Q8N6Y1 951 aaKnown RBP2.12□□□□□ -2.07
VPS13A-206ENST00000376646 OR5R1Q8NH85 324 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 ZKSCAN4Q969J2 545 aaPredicted RBP2.12□□□□□ -2.07
VPS13A-206ENST00000376646 FAM149B1Q96BN6 582 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 ZNF524Q96C55 264 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 ORAI1Q96D31 301 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 MMABQ96EY8 250 aaPredicted RBP2.12□□□□□ -2.07
VPS13A-206ENST00000376646 CMTM3Q96MX0 182 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 MAP7D2Q96T17 732 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 SYNCQ9H7C4 482 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 KIF9Q9HAQ2 790 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 NSMCE4AQ9NXX6 385 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 ZKSCAN7Q9P0L1 754 aaPredicted RBP2.12□□□□□ -2.07
VPS13A-206ENST00000376646 CNOT8Q9UFF9 292 aaKnown RBP2.12□□□□□ -2.07
VPS13A-206ENST00000376646 NRBP1Q9UHY1 535 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 TCF19Q9Y242 345 aa2.12□□□□□ -2.07
VPS13A-206ENST00000376646 PMS2P5A8MQ11 134 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 FAM72CH0Y354 149 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 VCYO14598 125 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 EDIL3O43854 480 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 EGFP01133 1207 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 PRSS1P07477 247 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 HSP90AA1P07900 732 aaKnown RBP2.11□□□□□ -2.07
VPS13A-206ENST00000376646 IL7RP16871 459 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 TM4SF1P30408 202 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 GARSP41250 739 aaKnown RBP2.11□□□□□ -2.07
VPS13A-206ENST00000376646 PITX1P78337 314 aaPredicted RBP2.11□□□□□ -2.07
VPS13A-206ENST00000376646 NUCB1Q02818 461 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 CSTF3Q12996 717 aaKnown RBP2.11□□□□□ -2.07
VPS13A-206ENST00000376646 WTAPQ15007 396 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 FAM72AQ5TYM5 149 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 GKAP1Q5VSY0 366 aaPredicted RBP2.11□□□□□ -2.07
VPS13A-206ENST00000376646 FAM72DQ6L9T8 149 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 ENOSF1Q7L5Y1 443 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 GSTA5Q7RTV2 222 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 SZRD1Q7Z422 152 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 FAM72BQ86X60 149 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 ARHGAP12Q8IWW6 846 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 C17orf53Q8N3J3 647 aaPredicted RBP2.11□□□□□ -2.07
VPS13A-206ENST00000376646 SRBD1Q8N5C6 995 aaKnown RBP2.11□□□□□ -2.07
VPS13A-206ENST00000376646 GRAPLQ8TC17 118 aaPredicted RBP2.11□□□□□ -2.07
VPS13A-206ENST00000376646 SLC38A5Q8WUX1 472 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 FAM120BQ96EK7 910 aaKnown RBP2.11□□□□□ -2.07
VPS13A-206ENST00000376646 ZNF354BQ96LW1 612 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 DUX3Q96PT4 197 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 LITAFQ99732 161 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 SYT17Q9BSW7 474 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 STRA6Q9BX79 667 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 KAT14Q9H8E8 782 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 RRP7BPQ9NSQ0 103 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 CLIC5Q9NZA1 410 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 TTC7AQ9ULT0 858 aaPredicted RBP2.11□□□□□ -2.07
VPS13A-206ENST00000376646 PCDHGB4Q9UN71 923 aa2.11□□□□□ -2.07
VPS13A-206ENST00000376646 FAM237AA0A1B0GTK4 181 aa2.11□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms