RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 IL27RAQ6UWB1 636 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 USP50Q70EL3 339 aaPredicted RBP12.04□□□□□ -0.48
CLIP3-201ENST00000360535 GPR180Q86V85 440 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 AQP12AQ8IXF9 295 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 OR2T11Q8NH01 316 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 EEF1AKMT1Q8WVE0 214 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 SEPT8Q92599 483 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 PPP1R2P1Q96PQ5 205 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 TSPAN18Q96SJ8 248 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 AARSD1Q9BTE6 412 aaKnown RBP12.04□□□□□ -0.48
CLIP3-201ENST00000360535 CCDC90BQ9GZT6 254 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 ARNT2Q9HBZ2 717 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 SDR39U1Q9NRG7 319 aaPredicted RBP12.04□□□□□ -0.48
CLIP3-201ENST00000360535 SQORQ9Y6N5 450 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 GNGT2O14610 69 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 FFAR3O14843 346 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 GPR42O15529 346 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 TAF10Q12962 218 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 SELPLGQ14242 412 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 MAPRE1Q15691 268 aaKnown RBP12.04□□□□□ -0.48
CLIP3-201ENST00000360535 TMTC4Q5T4D3 741 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 KANK2Q63ZY3 851 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 C8orf82Q6P1X6 216 aaPredicted RBP12.04□□□□□ -0.48
CLIP3-201ENST00000360535 CD300LGQ6UXG3 332 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 MON1AQ86VX9 555 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 PHYKPLQ8IUZ5 450 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 MINDY1Q8N5J2 469 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 KLHL23Q8NBE8 558 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 ZUFSPQ96AP4 578 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 FAM210AQ96ND0 272 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 UHRF1Q96T88 793 aaPredicted RBP12.04□□□□□ -0.48
CLIP3-201ENST00000360535 ZBED2Q9BTP6 218 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 FANCEQ9HB96 536 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 MRGBPQ9NV56 204 aa12.04□□□□□ -0.48
CLIP3-201ENST00000360535 A0A1W2PP18 115 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 ASPDHA6ND91 283 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 RSL1D1O76021 490 aaKnown RBP12.03□□□□□ -0.48
CLIP3-201ENST00000360535 BMP10O95393 424 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 PARNO95453 639 aaKnown RBP12.03□□□□□ -0.48
CLIP3-201ENST00000360535 IL7RP16871 459 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 MYF6P23409 242 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 IL12AP29459 219 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 HOXC13P31276 330 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 CAPGP40121 348 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 RGRP47804 291 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 HTR6P50406 440 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 BNIP2Q12982 314 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 NR6A1Q15406 480 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 SLC36A3Q495N2 470 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 PRMT9Q6P2P2 845 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 UMODL1-AS1Q8N2C9 162 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 ATP6V0D2Q8N8Y2 350 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 TNIP2Q8NFZ5 429 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 METTL6Q8TCB7 284 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 LINGO1Q96FE5 620 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 FEM1CQ96JP0 617 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 NSMCE2Q96MF7 247 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 C17orf80Q9BSJ5 609 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 DGCR6LQ9BY27 220 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 CCSER2Q9H7U1 834 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 IFT80Q9P2H3 777 aaPredicted RBP12.03□□□□□ -0.48
CLIP3-201ENST00000360535 TLR6Q9Y2C9 796 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 GPR45Q9Y5Y3 372 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 OAS3Q9Y6K5 1087 aaKnown RBP12.03□□□□□ -0.48
CLIP3-201ENST00000360535 DGKBQ9Y6T7 804 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 U3KQV3 271 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 C1orf232A0A0U1RR37 186 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 PTGES3LE9PB15 166 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 H0YJX3 145 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 H3BMQ9 156 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 ACOX3O15254 700 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 STC1P52823 247 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 TUBA4AP68366 448 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 GNA12Q03113 381 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 GALNT1Q10472 559 aaPredicted RBP12.03□□□□□ -0.48
CLIP3-201ENST00000360535 BFSP2Q13515 415 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 TAF1CQ15572 869 aaPredicted RBP12.03□□□□□ -0.48
CLIP3-201ENST00000360535 ATP6AP1Q15904 470 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 HACD2Q6Y1H2 254 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 LYSMD3Q7Z3D4 306 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.03□□□□□ -0.48
CLIP3-201ENST00000360535 COG8Q96MW5 612 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 THUMPD3Q9BV44 507 aaKnown RBP12.03□□□□□ -0.48
CLIP3-201ENST00000360535 SMURF2Q9HAU4 748 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 PCDHA9Q9Y5H5 950 aa12.03□□□□□ -0.48
CLIP3-201ENST00000360535 A8MX80 341 aa12.02□□□□□ -0.48
CLIP3-201ENST00000360535 CBX4O00257 560 aa12.02□□□□□ -0.48
CLIP3-201ENST00000360535 GSTA4O15217 222 aa12.02□□□□□ -0.48
CLIP3-201ENST00000360535 HSD17B1P14061 328 aa12.02□□□□□ -0.48
CLIP3-201ENST00000360535 RFC2P35250 354 aa12.02□□□□□ -0.48
CLIP3-201ENST00000360535 EIF4EBP2Q13542 120 aaPredicted RBP12.02□□□□□ -0.48
CLIP3-201ENST00000360535 ATP6AP1LQ52LC2 224 aa12.02□□□□□ -0.48
CLIP3-201ENST00000360535 LCN8Q6JVE9 175 aa12.02□□□□□ -0.48
CLIP3-201ENST00000360535 PSAPL1Q6NUJ1 521 aa12.02□□□□□ -0.48
CLIP3-201ENST00000360535 LINGO4Q6UY18 593 aa12.02□□□□□ -0.48
CLIP3-201ENST00000360535 MILR1Q7Z6M3 343 aa12.02□□□□□ -0.48
CLIP3-201ENST00000360535 ITIH5Q86UX2 942 aa12.02□□□□□ -0.48
CLIP3-201ENST00000360535 CCDC117Q8IWD4 279 aaPredicted RBP12.02□□□□□ -0.48
CLIP3-201ENST00000360535 ZC3H7AQ8IWR0 971 aaKnown RBP12.02□□□□□ -0.48
CLIP3-201ENST00000360535 KLHDC8BQ8IXV7 354 aa12.02□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms