RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 PATE1Q8WXA2 126 aa11.04□□□□□ -0.64
VRK3-210ENST00000596121 GATA6Q92908 595 aa11.04□□□□□ -0.64
VRK3-210ENST00000596121 OR2M4Q96R27 311 aa11.04□□□□□ -0.64
VRK3-210ENST00000596121 CDH19Q9H159 772 aa11.04□□□□□ -0.64
VRK3-210ENST00000596121 OR2AG1Q9H205 316 aa11.04□□□□□ -0.64
VRK3-210ENST00000596121 LRRC40Q9H9A6 602 aa11.04□□□□□ -0.64
VRK3-210ENST00000596121 TRIM39Q9HCM9 518 aa11.04□□□□□ -0.64
VRK3-210ENST00000596121 RAD18Q9NS91 495 aa11.04□□□□□ -0.64
VRK3-210ENST00000596121 TRNAU1APQ9NX07 287 aaKnown RBP11.04□□□□□ -0.64
VRK3-210ENST00000596121 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.04□□□□□ -0.64
VRK3-210ENST00000596121 TAAR2Q9P1P5 351 aa11.04□□□□□ -0.64
VRK3-210ENST00000596121 VPS18Q9P253 973 aa11.04□□□□□ -0.64
VRK3-210ENST00000596121 SLC23A2Q9UGH3 650 aa11.04□□□□□ -0.64
VRK3-210ENST00000596121 ZNHIT2Q9UHR6 403 aa11.04□□□□□ -0.64
VRK3-210ENST00000596121 FKBPLQ9UIM3 349 aa11.04□□□□□ -0.64
VRK3-210ENST00000596121 PADI4Q9UM07 663 aa11.04□□□□□ -0.64
VRK3-210ENST00000596121 SNX12Q9UMY4 172 aa11.04□□□□□ -0.64
VRK3-210ENST00000596121 ZKSCAN5Q9Y2L8 839 aa11.04□□□□□ -0.64
VRK3-210ENST00000596121 MSRB2Q9Y3D2 182 aa11.04□□□□□ -0.64
VRK3-210ENST00000596121 NEUROG3Q9Y4Z2 214 aa11.04□□□□□ -0.64
VRK3-210ENST00000596121 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.04□□□□□ -0.64
VRK3-210ENST00000596121 BPTFQ12830 3046 aa11.03□□□□□ -0.64
VRK3-210ENST00000596121 GLYATL1P3A0A0U1RQE8 302 aa11.03□□□□□ -0.64
VRK3-210ENST00000596121 TCRBV7S3A2A0A539 114 aa11.03□□□□□ -0.64
VRK3-210ENST00000596121 C1QTNF9BB2RNN3 333 aa11.03□□□□□ -0.64
VRK3-210ENST00000596121 CHUKO15111 745 aa11.03□□□□□ -0.64
VRK3-210ENST00000596121 STX7O15400 261 aaKnown RBP11.03□□□□□ -0.64
VRK3-210ENST00000596121 OPA1O60313 960 aa11.03□□□□□ -0.64
VRK3-210ENST00000596121 SLC25A14O95258 325 aaPredicted RBP11.03□□□□□ -0.64
VRK3-210ENST00000596121 C1QTNF9P0C862 333 aa11.03□□□□□ -0.64
VRK3-210ENST00000596121 PRSS56P0CW18 603 aa11.03□□□□□ -0.64
VRK3-210ENST00000596121 SPAM1P38567 509 aa11.03□□□□□ -0.64
VRK3-210ENST00000596121 TNNT3P45378 269 aaPredicted RBP11.03□□□□□ -0.64
VRK3-210ENST00000596121 TMPRSS15P98073 1019 aa11.03□□□□□ -0.64
VRK3-210ENST00000596121 ILKQ13418 452 aa11.03□□□□□ -0.64
VRK3-210ENST00000596121 CAMK2BQ13554 666 aa11.03□□□□□ -0.64
VRK3-210ENST00000596121 PEX6Q13608 980 aa11.03□□□□□ -0.64
VRK3-210ENST00000596121 TRIP13Q15645 432 aaPredicted RBP11.03□□□□□ -0.64
VRK3-210ENST00000596121 CERCAMQ5T4B2 595 aa11.03□□□□□ -0.64
VRK3-210ENST00000596121 HES3Q5TGS1 186 aa11.03□□□□□ -0.64
VRK3-210ENST00000596121 CDCP2Q5VXM1 449 aa11.03□□□□□ -0.64
VRK3-210ENST00000596121 PDPK2PQ6A1A2 396 aa11.03□□□□□ -0.64
VRK3-210ENST00000596121 SLC30A9Q6PML9 568 aa11.03□□□□□ -0.64
VRK3-210ENST00000596121 SDR16C5Q8N3Y7 309 aa11.03□□□□□ -0.64
VRK3-210ENST00000596121 ARL10Q8N8L6 244 aa11.03□□□□□ -0.64
VRK3-210ENST00000596121 MAIP1Q8WWC4 291 aa11.03□□□□□ -0.64
VRK3-210ENST00000596121 CNTNAP3BQ96NU0 1288 aa11.03□□□□□ -0.64
VRK3-210ENST00000596121 VPS35Q96QK1 796 aa11.03□□□□□ -0.64
VRK3-210ENST00000596121 CNTNAP3Q9BZ76 1288 aa11.03□□□□□ -0.64
VRK3-210ENST00000596121 RAB6BQ9NRW1 208 aa11.03□□□□□ -0.64
VRK3-210ENST00000596121 DOLKQ9UPQ8 538 aa11.03□□□□□ -0.64
VRK3-210ENST00000596121 NEU2Q9Y3R4 380 aa11.03□□□□□ -0.64
VRK3-210ENST00000596121 MYLKQ15746 1914 aa11.03□□□□□ -0.64
VRK3-210ENST00000596121 WDFY3Q8IZQ1 3526 aa11.02□□□□□ -0.65
VRK3-210ENST00000596121 TRBV23OR9-2A0A075B6M9 112 aa11.02□□□□□ -0.65
VRK3-210ENST00000596121 CCDC78A2IDD5 438 aa11.02□□□□□ -0.65
VRK3-210ENST00000596121 MROH6A6NGR9 719 aa11.02□□□□□ -0.65
VRK3-210ENST00000596121 PRR19A6NJB7 356 aa11.02□□□□□ -0.65
VRK3-210ENST00000596121 C2orf81A6NN90 581 aa11.02□□□□□ -0.65
VRK3-210ENST00000596121 B4DGG1 531 aa11.02□□□□□ -0.65
VRK3-210ENST00000596121 PSMD3O43242 534 aa11.02□□□□□ -0.65
VRK3-210ENST00000596121 GRID2O43424 1007 aa11.02□□□□□ -0.65
VRK3-210ENST00000596121 ECEL1O95672 775 aa11.02□□□□□ -0.65
VRK3-210ENST00000596121 CAPNS1P04632 268 aa11.02□□□□□ -0.65
VRK3-210ENST00000596121 GP1BAP07359 652 aa11.02□□□□□ -0.65
VRK3-210ENST00000596121 FDFT1P37268 417 aa11.02□□□□□ -0.65
VRK3-210ENST00000596121 COILP38432 576 aaPredicted RBP11.02□□□□□ -0.65
VRK3-210ENST00000596121 CDKN1CP49918 316 aaPredicted RBP11.02□□□□□ -0.65
VRK3-210ENST00000596121 ARSDP51689 593 aa11.02□□□□□ -0.65
VRK3-210ENST00000596121 MAZP56270 477 aaKnown RBP11.02□□□□□ -0.65
VRK3-210ENST00000596121 GNG11P61952 73 aa11.02□□□□□ -0.65
VRK3-210ENST00000596121 CCDC173Q0VFZ6 552 aa11.02□□□□□ -0.65
VRK3-210ENST00000596121 ILF3Q12906 894 aaKnown RBP eCLIP11.02□□□□□ -0.65
VRK3-210ENST00000596121 TARDBPQ13148 414 aaKnown RBP eCLIP11.02□□□□□ -0.65
VRK3-210ENST00000596121 HLTFQ14527 1009 aaKnown RBP eCLIP11.02□□□□□ -0.65
VRK3-210ENST00000596121 POU6F1Q14863 301 aa11.02□□□□□ -0.65
VRK3-210ENST00000596121 CYP1B1Q16678 543 aa11.02□□□□□ -0.65
VRK3-210ENST00000596121 CCDC38Q502W7 563 aa11.02□□□□□ -0.65
VRK3-210ENST00000596121 HS1BP3Q53T59 392 aa11.02□□□□□ -0.65
VRK3-210ENST00000596121 GPRC6AQ5T6X5 926 aa11.02□□□□□ -0.65
VRK3-210ENST00000596121 CHST15Q7LFX5 561 aaPredicted RBP11.02□□□□□ -0.65
VRK3-210ENST00000596121 C11orf96Q7Z7L8 435 aa11.02□□□□□ -0.65
VRK3-210ENST00000596121 TMPRSS12Q86WS5 348 aa11.02□□□□□ -0.65
VRK3-210ENST00000596121 GALNT13Q8IUC8 556 aa11.02□□□□□ -0.65
VRK3-210ENST00000596121 NAGSQ8N159 534 aa11.02□□□□□ -0.65
VRK3-210ENST00000596121 CCDC89Q8N998 374 aa11.02□□□□□ -0.65
VRK3-210ENST00000596121 RASGEF1AQ8N9B8 481 aa11.02□□□□□ -0.65
VRK3-210ENST00000596121 ZNF398Q8TD17 642 aa11.02□□□□□ -0.65
VRK3-210ENST00000596121 ACTRT1Q8TDG2 376 aa11.02□□□□□ -0.65
VRK3-210ENST00000596121 SCG3Q8WXD2 468 aaKnown RBP11.02□□□□□ -0.65
VRK3-210ENST00000596121 MAGOHBQ96A72 148 aaKnown RBP11.02□□□□□ -0.65
VRK3-210ENST00000596121 CCDC74AQ96AQ1 378 aa11.02□□□□□ -0.65
VRK3-210ENST00000596121 DNAJC1Q96KC8 554 aaKnown RBP11.02□□□□□ -0.65
VRK3-210ENST00000596121 PPP1R2P1Q96PQ5 205 aa11.02□□□□□ -0.65
VRK3-210ENST00000596121 GSDMCQ9BYG8 508 aa11.02□□□□□ -0.65
VRK3-210ENST00000596121 DPEP2Q9H4A9 486 aa11.02□□□□□ -0.65
VRK3-210ENST00000596121 FAM96AQ9H5X1 160 aa11.02□□□□□ -0.65
VRK3-210ENST00000596121 CASS4Q9NQ75 786 aa11.02□□□□□ -0.65
VRK3-210ENST00000596121 PAK5Q9P286 719 aa11.02□□□□□ -0.65
VRK3-210ENST00000596121 FEZ2Q9UHY8 353 aaPredicted RBP11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms