RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 GREB1Q4ZG55 1949 aa12.8□□□□□ -0.36
LDLR-207ENST00000558013 RNF103-CHMP3A0A140T963 221 aa12.8□□□□□ -0.36
LDLR-207ENST00000558013 TRMUO75648 421 aaKnown RBP12.8□□□□□ -0.36
LDLR-207ENST00000558013 FGF1P05230 155 aa12.8□□□□□ -0.36
LDLR-207ENST00000558013 HSPA8P11142 646 aaKnown RBP12.8□□□□□ -0.36
LDLR-207ENST00000558013 BMP2P12643 396 aa12.8□□□□□ -0.36
LDLR-207ENST00000558013 TACR2P21452 398 aa12.8□□□□□ -0.36
LDLR-207ENST00000558013 ARL1P40616 181 aaPredicted RBP12.8□□□□□ -0.36
LDLR-207ENST00000558013 SLC26A3P40879 764 aa12.8□□□□□ -0.36
LDLR-207ENST00000558013 YAP1P46937 504 aaKnown RBP12.8□□□□□ -0.36
LDLR-207ENST00000558013 GSK3BP49841 420 aa12.8□□□□□ -0.36
LDLR-207ENST00000558013 NFYCQ13952 458 aa12.8□□□□□ -0.36
LDLR-207ENST00000558013 HACD2Q6Y1H2 254 aa12.8□□□□□ -0.36
LDLR-207ENST00000558013 GALNT7Q86SF2 657 aa12.8□□□□□ -0.36
LDLR-207ENST00000558013 TMEM173Q86WV6 379 aaPredicted RBP12.8□□□□□ -0.36
LDLR-207ENST00000558013 RALGPS2Q86X27 583 aaPredicted RBP12.8□□□□□ -0.36
LDLR-207ENST00000558013 IFNL1Q8IU54 200 aa12.8□□□□□ -0.36
LDLR-207ENST00000558013 ADGRG5Q8IZF4 528 aa12.8□□□□□ -0.36
LDLR-207ENST00000558013 CDYL2Q8N8U2 506 aa12.8□□□□□ -0.36
LDLR-207ENST00000558013 KIAA1191Q96A73 305 aa12.8□□□□□ -0.36
LDLR-207ENST00000558013 FEM1CQ96JP0 617 aa12.8□□□□□ -0.36
LDLR-207ENST00000558013 UROC1Q96N76 676 aa12.8□□□□□ -0.36
LDLR-207ENST00000558013 TCF12Q99081 682 aa12.8□□□□□ -0.36
LDLR-207ENST00000558013 EFHD1Q9BUP0 239 aa12.8□□□□□ -0.36
LDLR-207ENST00000558013 EIF2B4Q9UI10 523 aaKnown RBP12.8□□□□□ -0.36
LDLR-207ENST00000558013 FKBPLQ9UIM3 349 aa12.8□□□□□ -0.36
LDLR-207ENST00000558013 OAS3Q9Y6K5 1087 aaKnown RBP12.8□□□□□ -0.36
LDLR-207ENST00000558013 ZNF23P17027 643 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 HLA-DPA1P20036 260 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 SUOXP51687 545 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 PARP15Q460N3 678 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 TAS1R1Q7RTX1 841 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 GLT6D1Q7Z4J2 308 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 ANKFN1Q8N957 763 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 LPCAT1Q8NF37 534 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 STAG3L4Q8TBR4 150 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 CYGBQ8WWM9 190 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 TMEM125Q96AQ2 219 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 ANKRD60Q9BZ19 345 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 SPC25Q9HBM1 224 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 AGPAT4Q9NRZ5 378 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 GKN1Q9NS71 199 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 ARMC1Q9NVT9 282 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 PCDHA9Q9Y5H5 950 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 EI24O14681 340 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 KERAO60938 352 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 NDUFS3O75489 264 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 OR4F21O95013 312 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 GJB5O95377 273 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 PRAMEF12O95522 483 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 CYBBP04839 570 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 ZNF140P52738 457 aaPredicted RBP12.79□□□□□ -0.36
LDLR-207ENST00000558013 NFE2Q16621 373 aaPredicted RBP12.79□□□□□ -0.36
LDLR-207ENST00000558013 TRIM71Q2Q1W2 868 aaKnown RBP12.79□□□□□ -0.36
LDLR-207ENST00000558013 MINDY1Q8N5J2 469 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 GPR150Q8NGU9 434 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 SOCS4Q8WXH5 440 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 DUS3LQ96G46 650 aaKnown RBP12.79□□□□□ -0.36
LDLR-207ENST00000558013 PLEKHG4BQ96PX9 1271 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 TFB2MQ9H5Q4 396 aaKnown RBP12.79□□□□□ -0.36
LDLR-207ENST00000558013 PREBQ9HCU5 417 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 TAS2R13Q9NYV9 303 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 EBF1Q9UH73 591 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 MAGED1Q9Y5V3 778 aaPredicted RBP12.79□□□□□ -0.36
LDLR-207ENST00000558013 SCN4AP35499 1836 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 CBX4O00257 560 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 NDST3O95803 873 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 TSPAN12O95859 305 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 PENKP01210 267 aaPredicted RBP12.79□□□□□ -0.36
LDLR-207ENST00000558013 ATP4BP51164 291 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 LIPEQ05469 1076 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 PLCL1Q15111 1095 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 RBBP7Q16576 425 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 SLC2A7Q6PXP3 512 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 TBPL2Q6SJ96 375 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 C16orf59Q7L2K0 433 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 RHEBL1Q8TAI7 183 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 UPF1Q92900 1129 aaKnown RBP eCLIP12.79□□□□□ -0.364e-11■■■■■ 39.3
LDLR-207ENST00000558013 HGH1Q9BTY7 390 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 ZFYVE28Q9HCC9 887 aa12.79□□□□□ -0.36
LDLR-207ENST00000558013 ACOX3O15254 700 aa12.78□□□□□ -0.36
LDLR-207ENST00000558013 RPL17P18621 184 aaKnown RBP12.78□□□□□ -0.36
LDLR-207ENST00000558013 HTR6P50406 440 aa12.78□□□□□ -0.36
LDLR-207ENST00000558013 ATP6V0D1P61421 351 aa12.78□□□□□ -0.36
LDLR-207ENST00000558013 PRKCZQ05513 592 aa12.78□□□□□ -0.36
LDLR-207ENST00000558013 TYSND1Q2T9J0 566 aa12.78□□□□□ -0.36
LDLR-207ENST00000558013 RTP2Q5QGT7 225 aa12.78□□□□□ -0.36
LDLR-207ENST00000558013 ANKS6Q68DC2 871 aa12.78□□□□□ -0.36
LDLR-207ENST00000558013 LPCAT2Q7L5N7 544 aa12.78□□□□□ -0.36
LDLR-207ENST00000558013 DENND1CQ8IV53 801 aa12.78□□□□□ -0.36
LDLR-207ENST00000558013 BHMTQ93088 406 aa12.78□□□□□ -0.36
LDLR-207ENST00000558013 WBP2Q969T9 261 aa12.78□□□□□ -0.36
LDLR-207ENST00000558013 HOPXQ9BPY8 73 aaPredicted RBP12.78□□□□□ -0.36
LDLR-207ENST00000558013 ADI1Q9BV57 179 aa12.78□□□□□ -0.36
LDLR-207ENST00000558013 ALG2Q9H553 416 aa12.78□□□□□ -0.36
LDLR-207ENST00000558013 RPF2Q9H7B2 306 aaKnown RBP12.78□□□□□ -0.36
LDLR-207ENST00000558013 TLR8Q9NR97 1041 aaKnown RBP12.78□□□□□ -0.36
LDLR-207ENST00000558013 PNPLA3Q9NST1 481 aa12.78□□□□□ -0.36
LDLR-207ENST00000558013 CDC14AQ9UNH5 594 aa12.78□□□□□ -0.36
LDLR-207ENST00000558013 VWA8A3KMH1 1905 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms