RNA–Protein interactions for RNA: ENST00000554079.1

SIX4-202, Transcript of SIX homeobox 4, humanhuman

TSL 1 (best)

Gene SIX4, Length 2,003 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-202ENST00000554079 CD83Q01151 205 aa9.5□□□□□ -0.89
SIX4-202ENST00000554079 ZNF543Q08ER8 600 aa9.5□□□□□ -0.89
SIX4-202ENST00000554079 FASTKQ14296 549 aaKnown RBP9.5□□□□□ -0.89
SIX4-202ENST00000554079 NOMO1Q15155 1222 aa9.5□□□□□ -0.89
SIX4-202ENST00000554079 AANATQ16613 207 aa9.5□□□□□ -0.89
SIX4-202ENST00000554079 SPDYE2Q495Y8 402 aa9.5□□□□□ -0.89
SIX4-202ENST00000554079 AGKQ53H12 422 aa9.5□□□□□ -0.89
SIX4-202ENST00000554079 ARL13AQ5H913 290 aaPredicted RBP9.5□□□□□ -0.89
SIX4-202ENST00000554079 RBM20Q5T481 1227 aaKnown RBP9.5□□□□□ -0.89
SIX4-202ENST00000554079 RAP1GAP2Q684P5 730 aa9.5□□□□□ -0.89
SIX4-202ENST00000554079 TIGD3Q6B0B8 471 aa9.5□□□□□ -0.89
SIX4-202ENST00000554079 TYW3Q6IPR3 259 aaKnown RBP9.5□□□□□ -0.89
SIX4-202ENST00000554079 DENND5AQ6IQ26 1287 aa9.5□□□□□ -0.89
SIX4-202ENST00000554079 CLEC14AQ86T13 490 aa9.5□□□□□ -0.89
SIX4-202ENST00000554079 RASGRP3Q8IV61 690 aa9.5□□□□□ -0.89
SIX4-202ENST00000554079 KCTD17Q8N5Z5 321 aa9.5□□□□□ -0.89
SIX4-202ENST00000554079 KLHL6Q8WZ60 621 aa9.5□□□□□ -0.89
SIX4-202ENST00000554079 ZNF566Q969W8 418 aa9.5□□□□□ -0.89
SIX4-202ENST00000554079 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.5□□□□□ -0.89
SIX4-202ENST00000554079 MCEEQ96PE7 176 aa9.5□□□□□ -0.89
SIX4-202ENST00000554079 FEM1AQ9BSK4 669 aa9.5□□□□□ -0.89
SIX4-202ENST00000554079 CCDC32Q9BV29 185 aa9.5□□□□□ -0.89
SIX4-202ENST00000554079 CDADC1Q9BWV3 514 aa9.5□□□□□ -0.89
SIX4-202ENST00000554079 C6orf62Q9GZU0 229 aaPredicted RBP9.5□□□□□ -0.89
SIX4-202ENST00000554079 LTB4R2Q9NPC1 389 aa9.5□□□□□ -0.89
SIX4-202ENST00000554079 OXSMQ9NWU1 459 aa9.5□□□□□ -0.89
SIX4-202ENST00000554079 SLC39A1Q9NY26 324 aa9.5□□□□□ -0.89
SIX4-202ENST00000554079 COL20A1Q9P218 1284 aa9.5□□□□□ -0.89
SIX4-202ENST00000554079 EGFL7Q9UHF1 273 aa9.5□□□□□ -0.89
SIX4-202ENST00000554079 TRMT112Q9UI30 125 aaKnown RBP9.5□□□□□ -0.89
SIX4-202ENST00000554079 KCNH4Q9UQ05 1017 aa9.5□□□□□ -0.89
SIX4-202ENST00000554079 PRELID3BQ9Y3B1 194 aa9.5□□□□□ -0.89
SIX4-202ENST00000554079 ZNF330Q9Y3S2 320 aaPredicted RBP9.5□□□□□ -0.89
SIX4-202ENST00000554079 PCDHGB2Q9Y5G2 931 aa9.5□□□□□ -0.89
SIX4-202ENST00000554079 SNX8Q9Y5X2 465 aa9.5□□□□□ -0.89
SIX4-202ENST00000554079 A0A0B4J293 547 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 CLDN24A6NM45 220 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 EFCAB9A8MZ26 197 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 H0Y626 953 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 CNTN5O94779 1100 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 SNRPB2P08579 225 aaKnown RBP9.49□□□□□ -0.89
SIX4-202ENST00000554079 TCF3P15923 654 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 TRIM23P36406 574 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 SLC15A1P46059 708 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 APLP1P51693 650 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 RGS1Q08116 209 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 CLCA4Q14CN2 919 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 PRR16Q569H4 304 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 TTC23Q5W5X9 447 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 NPNTQ6UXI9 565 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 LIPIQ6XZB0 460 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 CMC1Q7Z7K0 106 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 KIF18BQ86Y91 864 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 CDH26Q8IXH8 852 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 GPALPP1Q8IXQ4 340 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 ABRAQ8N0Z2 381 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 LRRC71Q8N4P6 559 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 TXNDC5Q8NBS9 432 aaKnown RBP9.49□□□□□ -0.89
SIX4-202ENST00000554079 FBXL13Q8NEE6 735 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 PTP4A1Q93096 173 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 TMCO6Q96DC7 493 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 RTP4Q96DX8 246 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 RNF31Q96EP0 1072 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 AURKBQ96GD4 344 aaPredicted RBP9.49□□□□□ -0.89
SIX4-202ENST00000554079 TNIP3Q96KP6 325 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 KLHL15Q96M94 604 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 SAMD11Q96NU1 681 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 NECTIN4Q96NY8 510 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 APOL4Q9BPW4 351 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 CCDC90BQ9GZT6 254 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 CATSPERBQ9H7T0 1116 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 SP110Q9HB58 689 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 IFT46Q9NQC8 304 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 ENTPD7Q9NQZ7 604 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 TRMT13Q9NUP7 481 aaKnown RBP9.49□□□□□ -0.89
SIX4-202ENST00000554079 ASNSD1Q9NWL6 643 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 FAM118AQ9NWS6 357 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 DPP3Q9NY33 737 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 MKLN1Q9UL63 735 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 RNF112Q9ULX5 631 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 TLR6Q9Y2C9 796 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 A0A1W2PRG6 482 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 LOC110117498-PIK3R3F6TDL0 507 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 SULT1B1O43704 296 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 USP2O75604 605 aaPredicted RBP9.49□□□□□ -0.89
SIX4-202ENST00000554079 MED26O95402 600 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 HPRP00739 348 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 IFNA14P01570 189 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 CALB1P05937 261 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 NR3C2P08235 984 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 STMN1P16949 149 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 MSH3P20585 1137 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 ITGALP20701 1170 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 TYK2P29597 1187 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 HNF4AP41235 474 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 LIG4P49917 911 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 CPT1AP50416 773 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 TPMTP51580 245 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 AP1S2P56377 157 aa9.49□□□□□ -0.89
SIX4-202ENST00000554079 SCRN3Q0VDG4 424 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms