RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 WDR70Q9NW82 654 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 MPP6Q9NZW5 540 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 TBC1D14Q9P2M4 693 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 UBA2Q9UBT2 640 aaPredicted RBP8.37□□□□□ -1.07
CHD4-208ENST00000540960 GRID1Q9ULK0 1009 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 NEU3Q9UQ49 428 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 VPS9D1Q9Y2B5 631 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 TBC1D30Q9Y2I9 924 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 SH3BP1Q9Y3L3 701 aa8.37□□□□□ -1.07
CHD4-208ENST00000540960 PLXNA2O75051 1894 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 CKAP5Q14008 2032 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 A0A1W2PQ67 120 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 C2orf78A6NCI8 922 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 TBC1D3BA6NDS4 549 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 BIRC5O15392 142 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 SEMA7AO75326 666 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 AVILO75366 819 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 H2AFYO75367 372 aaKnown RBP8.36□□□□□ -1.07
CHD4-208ENST00000540960 SNUPNO95149 360 aaKnown RBP8.36□□□□□ -1.07
CHD4-208ENST00000540960 CRTAMO95727 393 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 CLDN1O95832 211 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 TBX18O95935 607 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 CKMP06732 381 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 HMBSP08397 361 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 SFTPCP11686 197 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 NEFHP12036 1026 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 COL6A2P12110 1019 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 PRF1P14222 555 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 NFKBIAP25963 317 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 NTSR1P30989 418 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 CD68P34810 354 aaPredicted RBP8.36□□□□□ -1.07
CHD4-208ENST00000540960 CRHR1P34998 444 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 SERPINB8P50452 374 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 SERPINH1P50454 418 aaKnown RBP8.36□□□□□ -1.07
CHD4-208ENST00000540960 PRKAA2P54646 552 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 WNT3AP56704 352 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 RPL26P61254 145 aaKnown RBP8.36□□□□□ -1.07
CHD4-208ENST00000540960 CYP4F2P78329 520 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 NSUN2Q08J23 767 aaKnown RBP eCLIP8.36□□□□□ -1.07
CHD4-208ENST00000540960 ASPHQ12797 758 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 ZBTB17Q13105 803 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 ITIH4Q14624 930 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 E2F5Q15329 346 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 ANKRD20A4Q4UJ75 823 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 ATG16L1Q676U5 607 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 ALG1LQ6GMV1 187 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 RANBP10Q6VN20 620 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 CAPN12Q6ZSI9 719 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 ZNF534Q76KX8 674 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 TFAP2DQ7Z6R9 452 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 YTHDF3Q7Z739 585 aaKnown RBP8.36□□□□□ -1.07
CHD4-208ENST00000540960 GALNT7Q86SF2 657 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 C14orf80Q86SX3 495 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 DENND1CQ8IV53 801 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 KIRREL3Q8IZU9 778 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 NDUFAF2Q8N183 169 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 CNTD1Q8N815 330 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 NAT16Q8N8M0 369 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 ANKRD42Q8N9B4 389 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 CCDC197Q8NCU1 140 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 IPMKQ8NFU5 416 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 OR52K1Q8NGK4 314 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 SAP25Q8TEE9 199 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 SSC4DQ8WTU2 575 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 SNX19Q92543 992 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 MIB2Q96AX9 1013 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 OTUB2Q96DC9 234 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 SGF29Q96ES7 293 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 TSPAN17Q96FV3 270 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 HMCESQ96FZ2 354 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 PSKH2Q96QS6 385 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 TM9SF3Q9HD45 589 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 THSD1Q9NS62 852 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 GEMIN8Q9NWZ8 242 aaKnown RBP8.36□□□□□ -1.07
CHD4-208ENST00000540960 HACD3Q9P035 362 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 USP36Q9P275 1121 aaKnown RBP8.36□□□□□ -1.07
CHD4-208ENST00000540960 NUDT5Q9UKK9 219 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 CORO1CQ9ULV4 474 aaPredicted RBP8.36□□□□□ -1.07
CHD4-208ENST00000540960 RPL26L1Q9UNX3 145 aaKnown RBP8.36□□□□□ -1.07
CHD4-208ENST00000540960 MFHAS1Q9Y4C4 1052 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 TTLL3Q9Y4R7 772 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 SNX10Q9Y5X0 201 aa8.36□□□□□ -1.07
CHD4-208ENST00000540960 NIPBLQ6KC79 2804 aaeCLIP8.36□□□□□ -1.073e-7■■□□□ 13.1
CHD4-208ENST00000540960 ANKHD1Q8IWZ3 2542 aaKnown RBP8.35□□□□□ -1.07
CHD4-208ENST00000540960 COL27A1Q8IZC6 1860 aaPredicted RBP8.35□□□□□ -1.07
CHD4-208ENST00000540960 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP8.35□□□□□ -1.07
CHD4-208ENST00000540960 TRIM49D1C9J1S8 452 aa8.35□□□□□ -1.07
CHD4-208ENST00000540960 TYROBPO43914 113 aa8.35□□□□□ -1.07
CHD4-208ENST00000540960 GLRA3O75311 464 aa8.35□□□□□ -1.07
CHD4-208ENST00000540960 ATP5BP06576 529 aaKnown RBP8.35□□□□□ -1.07
CHD4-208ENST00000540960 TROVE2P10155 538 aaKnown RBP eCLIP8.35□□□□□ -1.07
CHD4-208ENST00000540960 ADRA1AP35348 466 aa8.35□□□□□ -1.07
CHD4-208ENST00000540960 PPARGP37231 505 aaPredicted RBP8.35□□□□□ -1.07
CHD4-208ENST00000540960 TPMTP51580 245 aa8.35□□□□□ -1.07
CHD4-208ENST00000540960 INHBCP55103 352 aa8.35□□□□□ -1.07
CHD4-208ENST00000540960 SULT2A1Q06520 285 aa8.35□□□□□ -1.07
CHD4-208ENST00000540960 CDH18Q13634 790 aa8.35□□□□□ -1.07
CHD4-208ENST00000540960 GRM3Q14832 879 aa8.35□□□□□ -1.07
CHD4-208ENST00000540960 PDK4Q16654 411 aa8.35□□□□□ -1.07
CHD4-208ENST00000540960 INAVAQ3KP66 663 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms