RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 PGBD5Q8N414 524 aa14.07□□□□□ -0.16
PRPF40A-211ENST00000493468 PRR7Q8TB68 274 aa14.07□□□□□ -0.16
PRPF40A-211ENST00000493468 PIH1D2Q8WWB5 315 aa14.07□□□□□ -0.16
PRPF40A-211ENST00000493468 SCAMP4Q969E2 229 aa14.07□□□□□ -0.16
PRPF40A-211ENST00000493468 FCRL4Q96PJ5 515 aa14.07□□□□□ -0.16
PRPF40A-211ENST00000493468 PHF12Q96QT6 1004 aa14.07□□□□□ -0.16
PRPF40A-211ENST00000493468 PCDHB18PQ96TA0 734 aa14.07□□□□□ -0.16
PRPF40A-211ENST00000493468 VPS16Q9H269 839 aa14.07□□□□□ -0.16
PRPF40A-211ENST00000493468 GANQ9H2C0 597 aa14.07□□□□□ -0.16
PRPF40A-211ENST00000493468 ACSS2Q9NR19 701 aa14.07□□□□□ -0.16
PRPF40A-211ENST00000493468 GPATCH2LQ9NWQ4 482 aa14.07□□□□□ -0.16
PRPF40A-211ENST00000493468 DNPEPQ9ULA0 475 aa14.07□□□□□ -0.16
PRPF40A-211ENST00000493468 SRPK3Q9UPE1 567 aa14.07□□□□□ -0.16
PRPF40A-211ENST00000493468 KCNK6Q9Y257 313 aa14.07□□□□□ -0.16
PRPF40A-211ENST00000493468 SLC5A6Q9Y289 635 aa14.07□□□□□ -0.16
PRPF40A-211ENST00000493468 APCP25054 2843 aa14.07□□□□□ -0.16
PRPF40A-211ENST00000493468 DAPK3O43293 454 aa14.06□□□□□ -0.16
PRPF40A-211ENST00000493468 UBXN7O94888 489 aa14.06□□□□□ -0.16
PRPF40A-211ENST00000493468 ASMTLO95671 621 aa14.06□□□□□ -0.16
PRPF40A-211ENST00000493468 ACP5P13686 325 aa14.06□□□□□ -0.16
PRPF40A-211ENST00000493468 XRCC1P18887 633 aaPredicted RBP14.06□□□□□ -0.16
PRPF40A-211ENST00000493468 PTPN4P29074 926 aa14.06□□□□□ -0.16
PRPF40A-211ENST00000493468 SOX5P35711 763 aa14.06□□□□□ -0.16
PRPF40A-211ENST00000493468 LEPRP48357 1165 aaKnown RBP14.06□□□□□ -0.16
PRPF40A-211ENST00000493468 HCAR3P49019 387 aa14.06□□□□□ -0.16
PRPF40A-211ENST00000493468 JAM2P57087 298 aa14.06□□□□□ -0.16
PRPF40A-211ENST00000493468 PTSQ03393 145 aa14.06□□□□□ -0.16
PRPF40A-211ENST00000493468 TMEM26Q6ZUK4 368 aa14.06□□□□□ -0.16
PRPF40A-211ENST00000493468 PHYKPLQ8IUZ5 450 aa14.06□□□□□ -0.16
PRPF40A-211ENST00000493468 NDUFAF2Q8N183 169 aa14.06□□□□□ -0.16
PRPF40A-211ENST00000493468 BBS5Q8N3I7 341 aa14.06□□□□□ -0.16
PRPF40A-211ENST00000493468 MLKLQ8NB16 471 aa14.06□□□□□ -0.16
PRPF40A-211ENST00000493468 KLHL6Q8WZ60 621 aa14.06□□□□□ -0.16
PRPF40A-211ENST00000493468 PNPLA2Q96AD5 504 aa14.06□□□□□ -0.16
PRPF40A-211ENST00000493468 TGM7Q96PF1 710 aa14.06□□□□□ -0.16
PRPF40A-211ENST00000493468 AGAP2Q99490 1192 aa14.06□□□□□ -0.16
PRPF40A-211ENST00000493468 ING2Q9H160 280 aa14.06□□□□□ -0.16
PRPF40A-211ENST00000493468 DHX35Q9H5Z1 703 aaKnown RBP14.06□□□□□ -0.16
PRPF40A-211ENST00000493468 SLAMF7Q9NQ25 335 aa14.06□□□□□ -0.16
PRPF40A-211ENST00000493468 POLEQ07864 2286 aa14.05□□□□□ -0.16
PRPF40A-211ENST00000493468 FZD6O60353 706 aa14.05□□□□□ -0.16
PRPF40A-211ENST00000493468 SNX2O60749 519 aa14.05□□□□□ -0.16
PRPF40A-211ENST00000493468 KRT38O76015 456 aa14.05□□□□□ -0.16
PRPF40A-211ENST00000493468 CTPS1P17812 591 aa14.05□□□□□ -0.16
PRPF40A-211ENST00000493468 LPOP22079 712 aaPredicted RBP14.05□□□□□ -0.16
PRPF40A-211ENST00000493468 CAPZBP47756 277 aa14.05□□□□□ -0.16
PRPF40A-211ENST00000493468 SEPHS1P49903 392 aa14.05□□□□□ -0.16
PRPF40A-211ENST00000493468 STC1P52823 247 aa14.05□□□□□ -0.16
PRPF40A-211ENST00000493468 PTPRRQ15256 657 aa14.05□□□□□ -0.16
PRPF40A-211ENST00000493468 CA9Q16790 459 aa14.05□□□□□ -0.16
PRPF40A-211ENST00000493468 ERMARDQ5T6L9 678 aa14.05□□□□□ -0.16
PRPF40A-211ENST00000493468 SLC6A19Q695T7 634 aa14.05□□□□□ -0.16
PRPF40A-211ENST00000493468 PSTKQ8IV42 348 aaKnown RBP14.05□□□□□ -0.16
PRPF40A-211ENST00000493468 AOPEPQ8N6M6 819 aa14.05□□□□□ -0.16
PRPF40A-211ENST00000493468 RNF31Q96EP0 1072 aa14.05□□□□□ -0.16
PRPF40A-211ENST00000493468 C5orf34Q96MH7 638 aa14.05□□□□□ -0.16
PRPF40A-211ENST00000493468 PLEKHG4BQ96PX9 1271 aa14.05□□□□□ -0.16
PRPF40A-211ENST00000493468 KCTD15Q96SI1 283 aaPredicted RBP14.05□□□□□ -0.16
PRPF40A-211ENST00000493468 SNRNP25Q9BV90 132 aaKnown RBP14.05□□□□□ -0.16
PRPF40A-211ENST00000493468 RIOK2Q9BVS4 552 aaKnown RBP14.05□□□□□ -0.16
PRPF40A-211ENST00000493468 PDE7BQ9NP56 450 aa14.05□□□□□ -0.16
PRPF40A-211ENST00000493468 SEMA5BQ9P283 1151 aa14.05□□□□□ -0.16
PRPF40A-211ENST00000493468 EPHA6Q9UF33 1036 aa14.05□□□□□ -0.16
PRPF40A-211ENST00000493468 CNOT6Q9ULM6 557 aaKnown RBP14.05□□□□□ -0.16
PRPF40A-211ENST00000493468 PRKAB1Q9Y478 270 aa14.05□□□□□ -0.16
PRPF40A-211ENST00000493468 F8P00451 2351 aa14.04□□□□□ -0.16
PRPF40A-211ENST00000493468 A0A0J9YYE9 177 aa14.04□□□□□ -0.16
PRPF40A-211ENST00000493468 SSU72P8A0A1W2PR75 194 aa14.04□□□□□ -0.16
PRPF40A-211ENST00000493468 ARGFXA6NJG6 315 aa14.04□□□□□ -0.16
PRPF40A-211ENST00000493468 RASSF9O75901 435 aa14.04□□□□□ -0.16
PRPF40A-211ENST00000493468 TRBC1P01850 177 aa14.04□□□□□ -0.16
PRPF40A-211ENST00000493468 ATP1A1P05023 1023 aaKnown RBP14.04□□□□□ -0.16
PRPF40A-211ENST00000493468 NELFEP18615 380 aaKnown RBP14.04□□□□□ -0.16
PRPF40A-211ENST00000493468 CCL11P51671 97 aa14.04□□□□□ -0.16
PRPF40A-211ENST00000493468 RPS15P62841 145 aaKnown RBP14.04□□□□□ -0.16
PRPF40A-211ENST00000493468 OGDHQ02218 1023 aa14.04□□□□□ -0.16
PRPF40A-211ENST00000493468 CHAF1BQ13112 559 aa14.04□□□□□ -0.16
PRPF40A-211ENST00000493468 IL10RAQ13651 578 aa14.04□□□□□ -0.16
PRPF40A-211ENST00000493468 DPYSQ14117 519 aa14.04□□□□□ -0.16
PRPF40A-211ENST00000493468 ZRANB3Q5FWF4 1079 aa14.04□□□□□ -0.16
PRPF40A-211ENST00000493468 DCUN1D2Q6PH85 259 aa14.04□□□□□ -0.16
PRPF40A-211ENST00000493468 BPHLQ86WA6 291 aaPredicted RBP14.04□□□□□ -0.16
PRPF40A-211ENST00000493468 RHOT1Q8IXI2 618 aa14.04□□□□□ -0.16
PRPF40A-211ENST00000493468 SRRM1Q8IYB3 904 aaKnown RBP14.04□□□□□ -0.16
PRPF40A-211ENST00000493468 TTC13Q8NBP0 860 aa14.04□□□□□ -0.16
PRPF40A-211ENST00000493468 ELMO2Q96JJ3 720 aa14.04□□□□□ -0.16
PRPF40A-211ENST00000493468 RAB33BQ9H082 229 aa14.04□□□□□ -0.16
PRPF40A-211ENST00000493468 CARD9Q9H257 536 aa14.04□□□□□ -0.16
PRPF40A-211ENST00000493468 G3BP2Q9UN86 482 aaKnown RBP14.04□□□□□ -0.16
PRPF40A-211ENST00000493468 SLC30A1Q9Y6M5 507 aa14.04□□□□□ -0.16
PRPF40A-211ENST00000493468 A0A0U1RQS6 177 aa14.03□□□□□ -0.16
PRPF40A-211ENST00000493468 GPR89AB7ZAQ6 455 aa14.03□□□□□ -0.16
PRPF40A-211ENST00000493468 PES1O00541 588 aaKnown RBP14.03□□□□□ -0.16
PRPF40A-211ENST00000493468 GRID2O43424 1007 aa14.03□□□□□ -0.16
PRPF40A-211ENST00000493468 NUAK1O60285 661 aa14.03□□□□□ -0.16
PRPF40A-211ENST00000493468 TIAF1O95411 115 aa14.03□□□□□ -0.16
PRPF40A-211ENST00000493468 CBX6O95503 412 aa14.03□□□□□ -0.16
PRPF40A-211ENST00000493468 VIPP01282 170 aa14.03□□□□□ -0.16
PRPF40A-211ENST00000493468 PDHA1P08559 390 aa14.03□□□□□ -0.16
PRPF40A-211ENST00000493468 GPR89BP0CG08 455 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms