RNA–Protein interactions for RNA: ENST00000463684.1

SMC1A-204, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 2

Gene SMC1A, Length 880 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-204ENST00000463684 TRIM55Q9BYV6 548 aa14.3□□□□□ -0.12
SMC1A-204ENST00000463684 ZNF768Q9H5H4 540 aaKnown RBP14.3□□□□□ -0.12
SMC1A-204ENST00000463684 UCK1Q9HA47 277 aa14.3□□□□□ -0.12
SMC1A-204ENST00000463684 LHX9Q9NQ69 397 aa14.3□□□□□ -0.12
SMC1A-204ENST00000463684 ACSS2Q9NR19 701 aa14.3□□□□□ -0.12
SMC1A-204ENST00000463684 RCOR3Q9P2K3 495 aaPredicted RBP14.3□□□□□ -0.12
SMC1A-204ENST00000463684 DNPEPQ9ULA0 475 aa14.3□□□□□ -0.12
SMC1A-204ENST00000463684 PCYT1BQ9Y5K3 369 aaPredicted RBP14.3□□□□□ -0.12
SMC1A-204ENST00000463684 ICE1Q9Y2F5 2266 aa14.29□□□□□ -0.12
SMC1A-204ENST00000463684 A0A0J9YYE9 177 aa14.29□□□□□ -0.12
SMC1A-204ENST00000463684 H3BRJ5 948 aa14.29□□□□□ -0.12
SMC1A-204ENST00000463684 GRID2O43424 1007 aa14.29□□□□□ -0.12
SMC1A-204ENST00000463684 MAFKO60675 156 aa14.29□□□□□ -0.12
SMC1A-204ENST00000463684 LRCH4O75427 683 aa14.29□□□□□ -0.12
SMC1A-204ENST00000463684 VIPP01282 170 aa14.29□□□□□ -0.12
SMC1A-204ENST00000463684 TRBC1P01850 177 aa14.29□□□□□ -0.12
SMC1A-204ENST00000463684 RNF224P0DH78 156 aa14.29□□□□□ -0.12
SMC1A-204ENST00000463684 FGF5P12034 268 aa14.29□□□□□ -0.12
SMC1A-204ENST00000463684 XRCC1P18887 633 aaPredicted RBP14.29□□□□□ -0.12
SMC1A-204ENST00000463684 VARSP26640 1264 aaKnown RBP14.29□□□□□ -0.12
SMC1A-204ENST00000463684 COL8A1P27658 744 aa14.29□□□□□ -0.12
SMC1A-204ENST00000463684 CCL11P51671 97 aa14.29□□□□□ -0.12
SMC1A-204ENST00000463684 STC1P52823 247 aa14.29□□□□□ -0.12
SMC1A-204ENST00000463684 CDH6P55285 790 aa14.29□□□□□ -0.12
SMC1A-204ENST00000463684 MAMLD1Q13495 774 aa14.29□□□□□ -0.12
SMC1A-204ENST00000463684 DPYSQ14117 519 aa14.29□□□□□ -0.12
SMC1A-204ENST00000463684 INPP5JQ15735 1006 aaPredicted RBP14.29□□□□□ -0.12
SMC1A-204ENST00000463684 LARP7Q4G0J3 582 aaKnown RBP eCLIP14.29□□□□□ -0.12
SMC1A-204ENST00000463684 TMCO3Q6UWJ1 677 aa14.29□□□□□ -0.12
SMC1A-204ENST00000463684 TRIM48Q8IWZ4 208 aa14.29□□□□□ -0.12
SMC1A-204ENST00000463684 RAVER1Q8IY67 606 aaKnown RBP14.29□□□□□ -0.12
SMC1A-204ENST00000463684 ATPAF2Q8N5M1 289 aa14.29□□□□□ -0.12
SMC1A-204ENST00000463684 ARFGAP1Q8N6T3 406 aa14.29□□□□□ -0.12
SMC1A-204ENST00000463684 PRR7Q8TB68 274 aa14.29□□□□□ -0.12
SMC1A-204ENST00000463684 CT55Q8WUE5 264 aa14.29□□□□□ -0.12
SMC1A-204ENST00000463684 PLEKHG4BQ96PX9 1271 aa14.29□□□□□ -0.12
SMC1A-204ENST00000463684 GPR87Q9BY21 358 aa14.29□□□□□ -0.12
SMC1A-204ENST00000463684 SLC29A3Q9BZD2 475 aa14.29□□□□□ -0.12
SMC1A-204ENST00000463684 ACTL8Q9H568 366 aa14.29□□□□□ -0.12
SMC1A-204ENST00000463684 OGFRQ9NZT2 677 aa14.29□□□□□ -0.12
SMC1A-204ENST00000463684 MAP10Q9P2G4 905 aa14.29□□□□□ -0.12
SMC1A-204ENST00000463684 PCDHGA9Q9Y5G4 932 aaKnown RBP14.29□□□□□ -0.12
SMC1A-204ENST00000463684 GOLGA6L3A6NEY3 463 aa14.28□□□□□ -0.12
SMC1A-204ENST00000463684 MIPP30301 263 aa14.28□□□□□ -0.12
SMC1A-204ENST00000463684 DCTP40126 519 aa14.28□□□□□ -0.12
SMC1A-204ENST00000463684 ARL4AP40617 200 aa14.28□□□□□ -0.12
SMC1A-204ENST00000463684 UBE2HP62256 183 aa14.28□□□□□ -0.12
SMC1A-204ENST00000463684 RPS15P62841 145 aaKnown RBP14.28□□□□□ -0.12
SMC1A-204ENST00000463684 UBE2IP63279 158 aaKnown RBP14.28□□□□□ -0.12
SMC1A-204ENST00000463684 SPTBN1Q01082 2364 aaKnown RBP14.28□□□□□ -0.12
SMC1A-204ENST00000463684 UGT8Q16880 541 aa14.28□□□□□ -0.12
SMC1A-204ENST00000463684 CACHD1Q5VU97 1274 aa14.28□□□□□ -0.12
SMC1A-204ENST00000463684 PPP1R2P3Q6NXS1 205 aa14.28□□□□□ -0.12
SMC1A-204ENST00000463684 TMEM26Q6ZUK4 368 aa14.28□□□□□ -0.12
SMC1A-204ENST00000463684 AOPEPQ8N6M6 819 aa14.28□□□□□ -0.12
SMC1A-204ENST00000463684 NEK11Q8NG66 645 aa14.28□□□□□ -0.12
SMC1A-204ENST00000463684 CREBBPQ92793 2442 aa14.28□□□□□ -0.12
SMC1A-204ENST00000463684 ZDHHC12Q96GR4 267 aa14.28□□□□□ -0.12
SMC1A-204ENST00000463684 SMIM14Q96QK8 99 aa14.28□□□□□ -0.12
SMC1A-204ENST00000463684 CARD9Q9H257 536 aa14.28□□□□□ -0.12
SMC1A-204ENST00000463684 OSGEPL1Q9H4B0 414 aa14.28□□□□□ -0.12
SMC1A-204ENST00000463684 PDE7BQ9NP56 450 aa14.28□□□□□ -0.12
SMC1A-204ENST00000463684 NT5MQ9NPB1 228 aa14.28□□□□□ -0.12
SMC1A-204ENST00000463684 SLAMF7Q9NQ25 335 aa14.28□□□□□ -0.12
SMC1A-204ENST00000463684 KLC4Q9NSK0 619 aa14.28□□□□□ -0.12
SMC1A-204ENST00000463684 CNOT6Q9ULM6 557 aaKnown RBP14.28□□□□□ -0.12
SMC1A-204ENST00000463684 ZNF451Q9Y4E5 1061 aa14.28□□□□□ -0.12
SMC1A-204ENST00000463684 TCP11X1B4DZS4 312 aa14.27□□□□□ -0.13
SMC1A-204ENST00000463684 NUAK1O60285 661 aa14.27□□□□□ -0.13
SMC1A-204ENST00000463684 FZD6O60353 706 aa14.27□□□□□ -0.13
SMC1A-204ENST00000463684 SORBS2O94875 1100 aaKnown RBP14.27□□□□□ -0.13
SMC1A-204ENST00000463684 CLDN7O95471 211 aa14.27□□□□□ -0.13
SMC1A-204ENST00000463684 CCDC172P0C7W6 258 aa14.27□□□□□ -0.13
SMC1A-204ENST00000463684 AMPD1P23109 780 aa14.27□□□□□ -0.13
SMC1A-204ENST00000463684 LEPRP48357 1165 aaKnown RBP14.27□□□□□ -0.13
SMC1A-204ENST00000463684 CLCNKAP51800 687 aa14.27□□□□□ -0.13
SMC1A-204ENST00000463684 CT47A1Q5JQC4 288 aaPredicted RBP14.27□□□□□ -0.13
SMC1A-204ENST00000463684 PRSS42Q7Z5A4 293 aa14.27□□□□□ -0.13
SMC1A-204ENST00000463684 KLHL6Q8WZ60 621 aa14.27□□□□□ -0.13
SMC1A-204ENST00000463684 POLR1EQ9GZS1 481 aaKnown RBP14.27□□□□□ -0.13
SMC1A-204ENST00000463684 BRD8Q9H0E9 1235 aa14.27□□□□□ -0.13
SMC1A-204ENST00000463684 ING2Q9H160 280 aa14.27□□□□□ -0.13
SMC1A-204ENST00000463684 FAM83DQ9H4H8 585 aa14.27□□□□□ -0.13
SMC1A-204ENST00000463684 MLXIPLQ9NP71 852 aa14.27□□□□□ -0.13
SMC1A-204ENST00000463684 G3BP2Q9UN86 482 aaKnown RBP14.27□□□□□ -0.13
SMC1A-204ENST00000463684 PCDHGB7Q9Y5F8 929 aa14.27□□□□□ -0.13
SMC1A-204ENST00000463684 SLC30A1Q9Y6M5 507 aa14.27□□□□□ -0.13
SMC1A-204ENST00000463684 TMEM191CA6NGB0 347 aa14.26□□□□□ -0.13
SMC1A-204ENST00000463684 ARGFXA6NJG6 315 aa14.26□□□□□ -0.13
SMC1A-204ENST00000463684 KIF1CO43896 1103 aaKnown RBP14.26□□□□□ -0.13
SMC1A-204ENST00000463684 DPM1O60762 260 aa14.26□□□□□ -0.13
SMC1A-204ENST00000463684 ATP1A3P13637 1013 aa14.26□□□□□ -0.13
SMC1A-204ENST00000463684 CA4P22748 312 aa14.26□□□□□ -0.13
SMC1A-204ENST00000463684 CES1P23141 567 aa14.26□□□□□ -0.13
SMC1A-204ENST00000463684 PTPN4P29074 926 aa14.26□□□□□ -0.13
SMC1A-204ENST00000463684 SERPINB6P35237 376 aa14.26□□□□□ -0.13
SMC1A-204ENST00000463684 PDE1BQ01064 536 aa14.26□□□□□ -0.13
SMC1A-204ENST00000463684 CHAF1BQ13112 559 aa14.26□□□□□ -0.13
SMC1A-204ENST00000463684 MRPL49Q13405 166 aaKnown RBP14.26□□□□□ -0.13
SMC1A-204ENST00000463684 KRT31Q15323 416 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms