RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 BBOF1Q8ND07 529 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 LPCAT1Q8NF37 534 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 BAHD1Q8TBE0 780 aaPredicted RBP9.17□□□□□ -0.94
VPS53-203ENST00000401468 DTX3LQ8TDB6 740 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 ART4Q93070 314 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 EID2BQ96D98 161 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 IFT43Q96FT9 208 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 CRELD1Q96HD1 420 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 RANBP9Q96S59 729 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 FICDQ9BVA6 458 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 ZDHHC5Q9C0B5 715 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 XAB2Q9HCS7 855 aaKnown RBP9.17□□□□□ -0.94
VPS53-203ENST00000401468 RRAGDQ9NQL2 400 aaPredicted RBP9.17□□□□□ -0.94
VPS53-203ENST00000401468 UCKL1Q9NWZ5 548 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 B4GALT6Q9UBX8 382 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 ASIC3Q9UHC3 531 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 DMGDHQ9UI17 866 aaKnown RBP9.17□□□□□ -0.94
VPS53-203ENST00000401468 UTP11Q9Y3A2 253 aaKnown RBP9.17□□□□□ -0.94
VPS53-203ENST00000401468 MSRB2Q9Y3D2 182 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 NEUROG3Q9Y4Z2 214 aa9.17□□□□□ -0.94
VPS53-203ENST00000401468 A0A1B0GTQ1 180 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 RGSL1A5PLK6 1076 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 MROH6A6NGR9 719 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 E7ESA3 106 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 E7EVH7 732 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 F5H423 210 aaPredicted RBP9.16□□□□□ -0.94
VPS53-203ENST00000401468 VILLO15195 856 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 FLRT2O43155 660 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 LDB2O43679 373 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 USP12O75317 370 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 HEXIM1O94992 359 aaKnown RBP9.16□□□□□ -0.94
VPS53-203ENST00000401468 SLU7O95391 586 aaKnown RBP9.16□□□□□ -0.94
VPS53-203ENST00000401468 ALPIP09923 528 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 TNFRSF8P28908 595 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 VIPR1P32241 457 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 HMGCLP35914 325 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 NUDT1P36639 197 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 VPS41P49754 854 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 STC1P52823 247 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 RACK1P63244 317 aaKnown RBP9.16□□□□□ -0.94
VPS53-203ENST00000401468 CAV1Q03135 178 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 ACVR1Q04771 509 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 SLC14A1Q13336 389 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 FGL2Q14314 439 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 SPARCL1Q14515 664 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 PTPRRQ15256 657 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 CNGA3Q16281 694 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 ZNF423Q2M1K9 1284 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 CFAP58Q5T655 872 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 IZUMO3Q5VZ72 239 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 IL27RAQ6UWB1 636 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 ZDHHC24Q6UX98 284 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 RIPOR1Q6ZS17 1223 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 TMC3Q7Z5M5 1100 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 TECPR1Q7Z6L1 1165 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 NLRP8Q86W28 1048 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 AGGF1Q8N302 714 aaeCLIP9.16□□□□□ -0.94
VPS53-203ENST00000401468 OR52K1Q8NGK4 314 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 BRSK1Q8TDC3 778 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 PDCD6IPQ8WUM4 868 aaKnown RBP9.16□□□□□ -0.94
VPS53-203ENST00000401468 ADAMTS14Q8WXS8 1223 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 PEX13Q92968 403 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 CNDP2Q96KP4 475 aaKnown RBP9.16□□□□□ -0.94
VPS53-203ENST00000401468 COQ10AQ96MF6 247 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 SERPINB12Q96P63 405 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 IL22Q9GZX6 179 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 GDF3Q9NR23 364 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 ZDHHC18Q9NUE0 388 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 FTSJ1Q9UET6 329 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 ZFR2Q9UPR6 939 aaKnown RBP9.16□□□□□ -0.94
VPS53-203ENST00000401468 APOBEC2Q9Y235 224 aaKnown RBP9.16□□□□□ -0.94
VPS53-203ENST00000401468 SPO11Q9Y5K1 396 aa9.16□□□□□ -0.94
VPS53-203ENST00000401468 H7C0S8 307 aa9.15□□□□□ -0.94
VPS53-203ENST00000401468 TLR4O00206 839 aa9.15□□□□□ -0.94
VPS53-203ENST00000401468 RAD51BO15315 384 aa9.15□□□□□ -0.94
VPS53-203ENST00000401468 PRKCGP05129 697 aa9.15□□□□□ -0.94
VPS53-203ENST00000401468 C1SP09871 688 aa9.15□□□□□ -0.94
VPS53-203ENST00000401468 CYP2A6P11509 494 aaPredicted RBP9.15□□□□□ -0.94
VPS53-203ENST00000401468 ECHS1P30084 290 aa9.15□□□□□ -0.94
VPS53-203ENST00000401468 NPY2RP49146 381 aa9.15□□□□□ -0.94
VPS53-203ENST00000401468 ITGA8P53708 1063 aa9.15□□□□□ -0.94
VPS53-203ENST00000401468 EPHB1P54762 984 aa9.15□□□□□ -0.94
VPS53-203ENST00000401468 NXPH1P58417 271 aa9.15□□□□□ -0.94
VPS53-203ENST00000401468 DCDC1P59894 354 aa9.15□□□□□ -0.94
VPS53-203ENST00000401468 RPS21P63220 83 aaKnown RBP9.15□□□□□ -0.94
VPS53-203ENST00000401468 MRPS25P82663 173 aaKnown RBP9.15□□□□□ -0.94
VPS53-203ENST00000401468 SARNPP82979 210 aaKnown RBP9.15□□□□□ -0.94
VPS53-203ENST00000401468 DPTQ07507 201 aa9.15□□□□□ -0.94
VPS53-203ENST00000401468 TAF1AQ15573 450 aaPredicted RBP9.15□□□□□ -0.94
VPS53-203ENST00000401468 TRADDQ15628 312 aa9.15□□□□□ -0.94
VPS53-203ENST00000401468 ZNF284Q2VY69 593 aa9.15□□□□□ -0.94
VPS53-203ENST00000401468 TPRG1LQ5T0D9 272 aa9.15□□□□□ -0.94
VPS53-203ENST00000401468 LRRC66Q68CR7 880 aa9.15□□□□□ -0.94
VPS53-203ENST00000401468 CCDC70Q6NSX1 233 aa9.15□□□□□ -0.94
VPS53-203ENST00000401468 PPP1R21Q6ZMI0 780 aa9.15□□□□□ -0.94
VPS53-203ENST00000401468 ZNF765Q7L2R6 523 aa9.15□□□□□ -0.94
VPS53-203ENST00000401468 PTAR1Q7Z6K3 402 aaPredicted RBP9.15□□□□□ -0.94
VPS53-203ENST00000401468 TSPAN33Q86UF1 283 aa9.15□□□□□ -0.94
VPS53-203ENST00000401468 HORMAD1Q86X24 394 aa9.15□□□□□ -0.94
VPS53-203ENST00000401468 TAB3Q8N5C8 712 aaPredicted RBP9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms