RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 CSTF2P33240 577 aaKnown RBP eCLIP9.72□□□□□ -0.85
VRK3-216ENST00000599342 ARHGAP25P42331 645 aa9.72□□□□□ -0.85
VRK3-216ENST00000599342 FASLGP48023 281 aa9.72□□□□□ -0.85
VRK3-216ENST00000599342 LIMK2P53671 638 aa9.72□□□□□ -0.85
VRK3-216ENST00000599342 IFI35P80217 286 aaPredicted RBP9.72□□□□□ -0.85
VRK3-216ENST00000599342 HHEXQ03014 270 aa9.72□□□□□ -0.85
VRK3-216ENST00000599342 ZBTB17Q13105 803 aa9.72□□□□□ -0.85
VRK3-216ENST00000599342 GALNT3Q14435 633 aa9.72□□□□□ -0.85
VRK3-216ENST00000599342 IHHQ14623 411 aa9.72□□□□□ -0.85
VRK3-216ENST00000599342 QPCTQ16769 361 aa9.72□□□□□ -0.85
VRK3-216ENST00000599342 KIF26BQ2KJY2 2108 aa9.72□□□□□ -0.85
VRK3-216ENST00000599342 ASTE1Q2TB18 679 aaPredicted RBP9.72□□□□□ -0.85
VRK3-216ENST00000599342 HENMT1Q5T8I9 393 aaKnown RBP9.72□□□□□ -0.85
VRK3-216ENST00000599342 NKAIN2Q5VXU1 208 aa9.72□□□□□ -0.85
VRK3-216ENST00000599342 CHST15Q7LFX5 561 aaPredicted RBP9.72□□□□□ -0.85
VRK3-216ENST00000599342 NT5DC3Q86UY8 548 aa9.72□□□□□ -0.85
VRK3-216ENST00000599342 ZFAND4Q86XD8 727 aa9.72□□□□□ -0.85
VRK3-216ENST00000599342 VSIG1Q86XK7 387 aa9.72□□□□□ -0.85
VRK3-216ENST00000599342 RFX6Q8HWS3 928 aa9.72□□□□□ -0.85
VRK3-216ENST00000599342 PHYKPLQ8IUZ5 450 aa9.72□□□□□ -0.85
VRK3-216ENST00000599342 PLD5Q8N7P1 536 aa9.72□□□□□ -0.85
VRK3-216ENST00000599342 AGBL5Q8NDL9 886 aa9.72□□□□□ -0.85
VRK3-216ENST00000599342 OR10G6Q8NH81 332 aa9.72□□□□□ -0.85
VRK3-216ENST00000599342 SLC37A2Q8TED4 501 aa9.72□□□□□ -0.85
VRK3-216ENST00000599342 SGF29Q96ES7 293 aa9.72□□□□□ -0.85
VRK3-216ENST00000599342 MED8Q96G25 268 aa9.72□□□□□ -0.85
VRK3-216ENST00000599342 TAAR9Q96RI9 348 aa9.72□□□□□ -0.85
VRK3-216ENST00000599342 ARHGAP9Q9BRR9 750 aa9.72□□□□□ -0.85
VRK3-216ENST00000599342 B3GNT4Q9C0J1 378 aa9.72□□□□□ -0.85
VRK3-216ENST00000599342 FAM83DQ9H4H8 585 aa9.72□□□□□ -0.85
VRK3-216ENST00000599342 RMI1Q9H9A7 625 aa9.72□□□□□ -0.85
VRK3-216ENST00000599342 ZFYVE1Q9HBF4 777 aa9.72□□□□□ -0.85
VRK3-216ENST00000599342 PRKAB1Q9Y478 270 aa9.72□□□□□ -0.85
VRK3-216ENST00000599342 OAS3Q9Y6K5 1087 aaKnown RBP9.72□□□□□ -0.85
VRK3-216ENST00000599342 TRBV23OR9-2A0A075B6M9 112 aa9.71□□□□□ -0.86
VRK3-216ENST00000599342 FADS2P1A8MWK0 482 aa9.71□□□□□ -0.86
VRK3-216ENST00000599342 EFSO43281 561 aa9.71□□□□□ -0.86
VRK3-216ENST00000599342 DNAJC6O75061 913 aa9.71□□□□□ -0.86
VRK3-216ENST00000599342 MFAP3LO75121 409 aa9.71□□□□□ -0.86
VRK3-216ENST00000599342 MMP2P08253 660 aa9.71□□□□□ -0.86
VRK3-216ENST00000599342 THRAP10827 490 aa9.71□□□□□ -0.86
VRK3-216ENST00000599342 CCL4P13236 92 aa9.71□□□□□ -0.86
VRK3-216ENST00000599342 ACP5P13686 325 aa9.71□□□□□ -0.86
VRK3-216ENST00000599342 TNNT1P13805 278 aa9.71□□□□□ -0.86
VRK3-216ENST00000599342 MPSTP25325 297 aa9.71□□□□□ -0.86
VRK3-216ENST00000599342 CSF2RBP32927 897 aa9.71□□□□□ -0.86
VRK3-216ENST00000599342 ATP1A2P50993 1020 aa9.71□□□□□ -0.86
VRK3-216ENST00000599342 SRSF6Q13247 344 aaKnown RBP9.71□□□□□ -0.86
VRK3-216ENST00000599342 PCSK7Q16549 785 aa9.71□□□□□ -0.86
VRK3-216ENST00000599342 SKOR2Q2VWA4 1001 aaPredicted RBP9.71□□□□□ -0.86
VRK3-216ENST00000599342 ZNF569Q5MCW4 686 aa9.71□□□□□ -0.86
VRK3-216ENST00000599342 SLC9A4Q6AI14 798 aa9.71□□□□□ -0.86
VRK3-216ENST00000599342 CCDC70Q6NSX1 233 aa9.71□□□□□ -0.86
VRK3-216ENST00000599342 TMEM71Q6P5X7 295 aa9.71□□□□□ -0.86
VRK3-216ENST00000599342 ZNF574Q6ZN55 896 aaPredicted RBP9.71□□□□□ -0.86
VRK3-216ENST00000599342 LYSMD3Q7Z3D4 306 aa9.71□□□□□ -0.86
VRK3-216ENST00000599342 KDELC2Q7Z4H8 507 aa9.71□□□□□ -0.86
VRK3-216ENST00000599342 SLC9B2Q86UD5 537 aa9.71□□□□□ -0.86
VRK3-216ENST00000599342 VASH2Q86V25 355 aa9.71□□□□□ -0.86
VRK3-216ENST00000599342 ZNF761Q86XN6 746 aaPredicted RBP9.71□□□□□ -0.86
VRK3-216ENST00000599342 FAM129CQ86XR2 697 aa9.71□□□□□ -0.86
VRK3-216ENST00000599342 SFRP1Q8N474 314 aa9.71□□□□□ -0.86
VRK3-216ENST00000599342 AVL9Q8NBF6 648 aa9.71□□□□□ -0.86
VRK3-216ENST00000599342 SH3KBP1Q96B97 665 aa9.71□□□□□ -0.86
VRK3-216ENST00000599342 AGAP3Q96P47 875 aa9.71□□□□□ -0.86
VRK3-216ENST00000599342 WDR24Q96S15 920 aa9.71□□□□□ -0.86
VRK3-216ENST00000599342 HERPUD2Q9BSE4 406 aa9.71□□□□□ -0.86
VRK3-216ENST00000599342 SPATA16Q9BXB7 569 aa9.71□□□□□ -0.86
VRK3-216ENST00000599342 CEP41Q9BYV8 373 aa9.71□□□□□ -0.86
VRK3-216ENST00000599342 SEMA4CQ9C0C4 833 aa9.71□□□□□ -0.86
VRK3-216ENST00000599342 BRD8Q9H0E9 1235 aa9.71□□□□□ -0.86
VRK3-216ENST00000599342 CARD9Q9H257 536 aa9.71□□□□□ -0.86
VRK3-216ENST00000599342 NHEJ1Q9H9Q4 299 aaPredicted RBP9.71□□□□□ -0.86
VRK3-216ENST00000599342 SARS2Q9NP81 518 aaKnown RBP9.71□□□□□ -0.86
VRK3-216ENST00000599342 RAD18Q9NS91 495 aa9.71□□□□□ -0.86
VRK3-216ENST00000599342 SPTLC3Q9NUV7 552 aa9.71□□□□□ -0.86
VRK3-216ENST00000599342 DDX56Q9NY93 547 aaKnown RBP9.71□□□□□ -0.86
VRK3-216ENST00000599342 KCNK6Q9Y257 313 aa9.71□□□□□ -0.86
VRK3-216ENST00000599342 BAHCC1Q9P281 2608 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 C3orf70A6NLC5 250 aaPredicted RBP9.7□□□□□ -0.86
VRK3-216ENST00000599342 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.7□□□□□ -0.86
VRK3-216ENST00000599342 GRID2O43424 1007 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 SPOPO43791 374 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 NUAK1O60285 661 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 SNX2O60749 519 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 MTA2O94776 668 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 SLC25A14O95258 325 aaPredicted RBP9.7□□□□□ -0.86
VRK3-216ENST00000599342 ITGB2P05107 769 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 FGF3P11487 239 aaPredicted RBP9.7□□□□□ -0.86
VRK3-216ENST00000599342 F3P13726 295 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 SLC1A1P43005 524 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 TNNT3P45378 269 aaPredicted RBP9.7□□□□□ -0.86
VRK3-216ENST00000599342 MAPK9P45984 424 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 RAB15P59190 212 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 DCDC1P59894 354 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 DYNLT1P63172 113 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 NFATC2Q13469 925 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 SQSTM1Q13501 440 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 LRRC38Q5VT99 294 aa9.7□□□□□ -0.86
VRK3-216ENST00000599342 ALS2CLQ60I27 953 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms